Wall clock time and date at job start Tue Mar 31 2020 18:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36009 * 117.00106 * 2 1 4 4 C 1.35856 * 120.31691 * 359.97438 * 3 2 1 5 5 N 1.35439 * 120.77732 * 179.97438 * 4 3 2 6 6 H 0.97000 * 119.28942 * 180.02562 * 5 4 3 7 7 C 1.36424 * 121.41198 * 0.02776 * 5 4 3 8 8 C 1.48069 * 119.71648 * 179.97438 * 7 5 4 9 9 O 1.21520 * 119.99785 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00296 * 0.02562 * 8 7 5 11 11 C 1.46500 * 119.99873 * 174.96405 * 10 8 7 12 12 C 1.52998 * 109.47275 * 304.31905 * 11 10 8 13 13 C 1.53003 * 109.46885 * 64.31974 * 11 10 8 14 14 N 1.46506 * 109.47201 * 60.00182 * 13 11 10 15 15 C 1.36932 * 119.99879 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00483 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99581 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00301 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46786 * 60.00165 * 19 17 15 21 21 H 1.48501 * 109.47027 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47276 * 300.00277 * 19 17 15 23 23 C 1.53004 * 109.46866 * 184.31517 * 11 10 8 24 24 C 1.53005 * 117.49512 * 132.83388 * 23 11 10 25 25 C 1.53002 * 117.49676 * 64.17943 * 23 11 10 26 26 C 1.36180 * 120.55904 * 0.02562 * 7 5 4 27 27 C 1.41576 * 120.31473 * 179.72584 * 3 2 1 28 28 O 1.22270 * 120.65129 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46678 * 300.00281 * 1 2 3 31 31 H 1.08999 * 109.46935 * 59.99698 * 1 2 3 32 32 H 1.07999 * 119.60893 * 359.97438 * 4 3 2 33 33 H 0.96995 * 120.00033 * 354.96529 * 10 8 7 34 34 H 1.08995 * 109.46967 * 60.00319 * 12 11 10 35 35 H 1.09007 * 109.46519 * 179.97438 * 12 11 10 36 36 H 1.08991 * 109.47129 * 299.99750 * 12 11 10 37 37 H 1.08998 * 109.47087 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47523 * 299.99783 * 13 11 10 39 39 H 0.97000 * 119.99951 * 359.97438 * 14 13 11 40 40 H 0.97008 * 119.99794 * 179.97438 * 18 17 15 41 41 H 1.08994 * 115.55042 * 278.50677 * 23 11 10 42 42 H 1.09001 * 117.49723 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49698 * 145.01759 * 24 23 11 44 44 H 1.08997 * 117.49683 * 214.98009 * 25 23 11 45 45 H 1.09006 * 117.49779 * 359.97438 * 25 23 11 46 46 H 1.08001 * 120.40166 * 179.97438 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9181 3.5670 0.0000 6 1 1.3733 4.3695 0.0000 7 6 3.2774 3.6828 0.0005 8 6 3.8996 5.0265 0.0005 9 8 5.1099 5.1356 0.0004 10 7 3.1236 6.1284 0.0005 11 6 3.7353 7.4549 0.1118 12 6 4.5994 7.5139 1.3730 13 6 4.6077 7.7190 -1.1170 14 7 3.7802 7.6626 -2.3247 15 6 4.3476 7.8690 -3.5537 16 1 5.4051 8.0737 -3.6328 17 6 3.5637 7.8150 -4.6980 18 7 2.2751 7.5650 -4.6017 19 14 4.3376 8.0972 -6.3746 20 1 5.3898 7.0766 -6.6121 21 1 3.2949 7.9864 -7.4261 22 1 4.9435 9.4522 -6.4184 23 6 2.6374 8.5173 0.1956 24 6 2.7698 9.5858 1.2828 25 6 1.7146 8.4849 1.4156 26 6 4.0669 2.5732 -0.0001 27 6 3.4599 1.2937 0.0058 28 8 4.1430 0.2796 0.0114 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2345 2.2974 -0.0014 33 1 2.1602 6.0432 -0.0732 34 1 5.3815 6.7571 1.3132 35 1 5.0548 8.5008 1.4555 36 1 3.9779 7.3258 2.2484 37 1 5.0624 8.7062 -1.0344 38 1 5.3898 6.9622 -1.1768 39 1 2.8305 7.4784 -2.2537 40 1 1.7272 7.5277 -5.4013 41 1 2.2020 8.8196 -0.7568 42 1 3.6393 9.5321 1.9379 43 1 2.4212 10.5910 1.0456 44 1 0.6723 8.7661 1.2659 45 1 1.8895 7.7064 2.1584 46 1 5.1427 2.6679 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267856955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:32 Heat of formation + Delta-G solvation = -43.192193 kcal Electronic energy + Delta-G solvation = -29742.251073 eV Core-core repulsion = 25633.924385 eV Total energy + Delta-G solvation = -4108.326688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.59270 -41.34451 -39.54780 -38.86978 -38.69659 -36.39323 -35.24336 -33.29696 -32.71788 -31.96153 -30.89356 -28.42367 -27.61045 -26.08203 -24.86514 -24.24234 -23.99511 -23.10567 -21.95203 -20.86444 -20.17660 -19.26935 -19.22576 -18.60706 -17.34795 -17.14859 -17.07133 -16.98637 -16.51386 -16.32423 -16.12872 -15.67719 -15.46393 -15.35551 -15.23583 -14.97741 -14.78230 -14.33642 -14.16969 -13.85568 -13.79333 -13.71833 -13.24204 -13.08500 -12.79031 -12.50860 -12.39114 -12.27563 -12.25876 -12.11938 -12.01465 -11.77841 -11.33525 -11.11822 -11.03301 -10.87631 -10.67090 -10.52746 -10.16332 -8.94625 -8.79086 -7.96814 -5.21168 -0.49754 0.12407 1.45017 1.47054 1.47183 1.52342 1.66154 1.76895 2.30895 2.54588 2.56744 2.97159 3.34313 3.39991 3.52135 3.60058 3.66797 3.83152 3.89025 3.93020 4.18224 4.25372 4.34123 4.42488 4.46277 4.47570 4.53307 4.64909 4.80571 4.81795 4.84742 4.87872 4.98996 5.01228 5.06760 5.11854 5.24320 5.36785 5.41111 5.46686 5.47920 5.51301 5.76908 6.25359 6.27021 6.36676 6.89210 6.93443 7.35635 8.08564 8.37989 9.25668 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.003911 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.955895 B = 7157.633524 C = 8733.579127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.323 6.323 3 C -0.061 4.061 4 C 0.074 3.926 5 N -0.532 5.532 6 H 0.441 0.559 7 C 0.148 3.852 8 C 0.561 3.439 9 O -0.531 6.531 10 N -0.688 5.688 11 C 0.213 3.787 12 C -0.160 4.160 13 C 0.142 3.858 14 N -0.727 5.727 15 C -0.244 4.244 16 H 0.062 0.938 17 C -0.062 4.062 18 N -0.959 5.959 19 Si 0.960 3.040 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C -0.176 4.176 24 C -0.166 4.166 25 C -0.152 4.152 26 C -0.237 4.237 27 C 0.379 3.621 28 O -0.570 6.570 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.408 0.592 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.023 0.977 38 H 0.019 0.981 39 H 0.379 0.621 40 H 0.251 0.749 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 -2.325 17.373 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.236 6.236 3 C -0.112 4.112 4 C -0.055 4.055 5 N -0.145 5.145 6 H 0.282 0.718 7 C 0.032 3.968 8 C 0.345 3.655 9 O -0.406 6.406 10 N -0.340 5.340 11 C 0.128 3.872 12 C -0.218 4.218 13 C 0.014 3.986 14 N -0.371 5.371 15 C -0.377 4.377 16 H 0.080 0.920 17 C -0.256 4.256 18 N -0.610 5.610 19 Si 0.790 3.210 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.195 4.195 24 C -0.204 4.204 25 C -0.189 4.189 26 C -0.264 4.264 27 C 0.275 3.725 28 O -0.460 6.460 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.243 0.757 33 H 0.246 0.754 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.213 0.787 40 H 0.060 0.940 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.594 -2.904 17.279 20.475 hybrid contribution -0.312 0.353 -1.659 1.725 sum -10.906 -2.551 15.620 19.221 Atomic orbital electron populations 1.23521 0.76250 1.06095 1.03033 1.86230 1.23404 1.24428 1.89529 1.20121 0.93561 0.86367 1.11113 1.22305 1.00680 0.82277 1.00276 1.40843 1.03973 1.09891 1.59779 0.71787 1.20145 0.84106 0.94421 0.98085 1.17951 0.86857 0.83408 0.77298 1.90799 1.14655 1.85930 1.49249 1.45781 1.10388 1.05066 1.72747 1.19941 0.92367 0.80102 0.94828 1.22254 1.00325 1.03540 0.95649 1.21143 0.93699 0.97605 0.86102 1.42230 1.08030 1.85887 1.00927 1.19475 0.93264 1.39149 0.85768 0.92036 1.25289 0.96243 1.03559 1.00462 1.69721 1.05030 1.57814 1.28433 0.85411 0.77049 0.77968 0.80543 1.21515 1.21689 1.20554 1.22240 1.00991 1.00801 0.95437 1.23197 1.02272 0.94668 1.00231 1.23099 0.96384 1.01506 0.97899 1.22249 1.01961 0.91054 1.11141 1.17251 0.88051 0.89300 0.77872 1.90795 1.67264 1.39068 1.48903 0.86936 0.90069 0.90852 0.75659 0.75438 0.92204 0.90097 0.89794 0.95947 0.96308 0.78733 0.93996 0.89056 0.87016 0.88463 0.87387 0.86995 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.17 16 2 O -0.32 -8.09 10.33 -78.52 -0.81 -8.91 16 3 C -0.06 -1.56 6.71 22.54 0.15 -1.41 16 4 C 0.07 1.05 10.22 83.58 0.85 1.91 16 5 N -0.53 -8.02 5.26 -184.22 -0.97 -8.99 16 6 H 0.44 3.31 7.01 -92.71 -0.65 2.66 16 7 C 0.15 3.72 6.77 40.56 0.27 4.00 16 8 C 0.56 16.25 7.21 86.85 0.63 16.88 16 9 O -0.53 -19.70 12.51 -3.78 -0.05 -19.75 16 10 N -0.69 -16.39 4.71 -425.55 -2.01 -18.40 16 11 C 0.21 5.74 0.54 3.61 0.00 5.74 16 12 C -0.16 -3.67 6.98 71.98 0.50 -3.16 16 13 C 0.14 5.60 5.03 86.38 0.43 6.04 16 14 N -0.73 -34.55 5.04 -343.45 -1.73 -36.28 16 15 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 16 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 17 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 18 N -0.96 -55.00 13.06 21.65 0.28 -54.72 16 19 Si 0.96 45.96 29.55 68.60 2.03 47.98 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 C -0.18 -4.09 4.84 -10.79 -0.05 -4.14 16 24 C -0.17 -2.95 9.64 30.62 0.30 -2.65 16 25 C -0.15 -2.18 9.82 30.62 0.30 -1.88 16 26 C -0.24 -7.60 9.53 22.63 0.22 -7.38 16 27 C 0.38 13.28 6.78 23.93 0.16 13.44 16 28 O -0.57 -25.34 17.71 8.93 0.16 -25.18 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.42 7.66 -2.39 -0.02 0.40 16 31 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 32 H 0.23 0.71 6.21 -2.91 -0.02 0.69 16 33 H 0.41 6.90 6.71 -92.71 -0.62 6.27 16 34 H 0.06 1.69 6.03 -2.39 -0.01 1.68 16 35 H 0.08 1.70 6.78 -2.38 -0.02 1.68 16 36 H 0.08 1.45 6.98 -2.39 -0.02 1.43 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.02 0.86 6.32 -2.39 -0.02 0.84 16 39 H 0.38 17.98 6.62 -92.71 -0.61 17.37 16 40 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 41 H 0.09 2.81 7.08 -2.39 -0.02 2.79 16 42 H 0.11 1.75 5.88 -2.39 -0.01 1.74 16 43 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.11 1.21 7.34 -2.38 -0.02 1.20 16 46 H 0.15 5.22 7.58 -2.91 -0.02 5.19 16 Total: -1.00 -86.13 373.43 2.27 -83.87 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.82 Total: 27.54 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.19 Total: 12.83 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -4.42 Total: -118.39 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.70 Total: -53.84 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -86.13 2.27 -83.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.674 kcal (2) G-P(sol) polarization free energy of solvation -86.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds