Wall clock time and date at job start Tue Mar 31 2020 18:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 N 1.46501 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99836 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99911 * 359.97438 * 5 4 3 7 7 C 1.38813 * 119.99674 * 180.02562 * 5 4 3 8 8 N 1.31614 * 120.00100 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99590 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47345 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47116 * 119.99751 * 9 7 5 12 12 H 1.48500 * 109.46815 * 239.99317 * 9 7 5 13 13 N 1.46500 * 109.46802 * 120.00133 * 2 1 3 14 14 C 1.34773 * 120.00156 * 304.29283 * 13 2 1 15 15 O 1.21493 * 120.00386 * 354.98971 * 14 13 2 16 16 C 1.48329 * 119.99878 * 174.99056 * 14 13 2 17 17 N 1.31601 * 127.15892 * 359.95898 * 16 14 13 18 18 O 1.21561 * 111.54796 * 180.02562 * 17 16 14 19 19 C 1.32815 * 111.52294 * 359.94813 * 18 17 16 20 20 C 1.35709 * 106.69594 * 0.09361 * 19 18 17 21 21 C 1.50040 * 123.86282 * 179.88699 * 20 19 18 22 22 O 1.43623 * 107.82490 * 345.29719 * 21 20 19 23 23 C 1.42991 * 114.38157 * 50.01503 * 22 21 20 24 24 C 1.50464 * 130.86241 * 180.21735 * 19 18 17 25 25 C 1.52996 * 109.46969 * 240.00119 * 2 1 3 26 26 C 1.53004 * 117.49901 * 12.74541 * 25 2 1 27 27 C 1.53010 * 117.49855 * 304.08870 * 25 2 1 28 28 H 1.09009 * 109.46893 * 299.99937 * 1 2 3 29 29 H 1.09000 * 109.47030 * 59.99775 * 1 2 3 30 30 H 1.08994 * 109.47475 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46875 * 300.00680 * 3 2 1 32 32 H 1.09002 * 109.46478 * 60.00034 * 3 2 1 33 33 H 0.96994 * 119.99727 * 0.02562 * 4 3 2 34 34 H 0.97002 * 120.00072 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99576 * 124.29798 * 13 2 1 36 36 H 1.09000 * 109.78878 * 225.71931 * 21 20 19 37 37 H 1.08995 * 109.83678 * 104.90616 * 21 20 19 38 38 H 1.09001 * 109.39938 * 49.71564 * 23 22 21 39 39 H 1.08999 * 109.39646 * 169.53991 * 23 22 21 40 40 H 1.08998 * 109.72356 * 44.40892 * 24 19 18 41 41 H 1.08994 * 109.82479 * 283.54688 * 24 19 18 42 42 H 1.09001 * 115.55124 * 158.42031 * 25 2 1 43 43 H 1.08998 * 117.49761 * 0.02562 * 26 25 2 44 44 H 1.09003 * 117.49496 * 145.01604 * 26 25 2 45 45 H 1.08996 * 117.49394 * 214.97879 * 27 25 2 46 46 H 1.08998 * 117.49600 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1898 2.6284 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5779 2.6283 0.0013 8 7 6.2359 1.4885 0.0012 9 14 6.5119 4.2460 0.0029 10 1 5.5469 5.3747 0.0033 11 1 7.3655 4.3235 1.2156 12 1 7.3658 4.3257 -1.2094 13 7 2.0183 -0.6906 1.1962 14 6 1.6229 -0.2829 2.4184 15 8 0.9353 0.7121 2.5339 16 6 2.0272 -1.0488 3.6225 17 7 2.7636 -2.1388 3.6611 18 8 2.9202 -2.5318 4.8007 19 6 2.3034 -1.7461 5.6761 20 6 1.7025 -0.7617 4.9608 21 6 0.8917 0.3417 5.5742 22 8 0.5939 -0.0322 6.9285 23 6 1.7292 -0.4572 7.6868 24 6 2.2158 -1.8222 7.1763 25 6 2.0400 -0.7212 -1.2492 26 6 1.0274 -1.0155 -2.3579 27 6 1.5583 -2.1545 -1.4837 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.9900 0.6024 0.0006 34 1 7.2059 1.4884 0.0017 35 1 2.6262 -1.4414 1.1085 36 1 -0.0348 0.4733 5.0154 37 1 1.4632 1.2698 5.5648 38 1 2.5297 0.2751 7.5815 39 1 1.4517 -0.5416 8.7375 40 1 3.1991 -2.0430 7.5914 41 1 1.5083 -2.5989 7.4663 42 1 3.0589 -0.4772 -1.5500 43 1 -0.0019 -0.6949 -2.1974 44 1 1.3803 -0.9653 -3.3880 45 1 2.2601 -2.8531 -1.9390 46 1 0.8777 -2.5833 -0.7481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267865164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:16 Heat of formation + Delta-G solvation = 8.653920 kcal Electronic energy + Delta-G solvation = -30143.064924 eV Core-core repulsion = 26036.986452 eV Total energy + Delta-G solvation = -4106.078472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -46.32066 -41.51300 -39.92816 -39.11887 -36.44197 -35.34344 -35.11253 -34.25540 -33.09822 -31.74700 -31.13396 -27.79670 -27.61318 -26.08138 -25.09146 -24.69566 -24.05252 -23.18870 -22.23767 -20.98120 -20.27918 -19.31322 -19.11990 -18.96205 -18.15030 -17.18640 -17.12895 -16.88448 -16.52867 -16.32134 -16.12603 -15.88476 -15.66783 -15.33788 -15.04912 -14.67976 -14.57280 -14.28609 -13.88890 -13.82779 -13.74747 -13.30770 -13.15011 -12.86380 -12.84304 -12.71401 -12.52070 -12.29694 -12.13969 -12.07077 -12.04160 -11.81805 -11.53146 -11.36635 -11.16100 -11.04281 -10.93799 -10.86987 -10.28966 -10.14059 -9.00490 -7.99330 -5.26583 -0.06446 0.43939 1.41329 1.42060 1.52606 1.65915 1.83666 2.02616 2.51336 2.59331 2.78319 3.00222 3.33365 3.41051 3.52144 3.55883 3.70363 3.81941 3.87924 3.98730 4.09855 4.15236 4.18362 4.23079 4.33529 4.38585 4.43245 4.54401 4.66152 4.72111 4.79863 4.80677 4.81947 4.88553 4.91554 4.97119 4.98414 5.05812 5.19706 5.26820 5.37840 5.43649 5.50197 5.97727 6.22454 6.32868 6.81592 6.99221 7.29601 8.04174 8.30742 9.24168 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.004233 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.185588 B = 6613.451787 C = 8353.010377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.208 3.792 3 C 0.146 3.854 4 N -0.732 5.732 5 C -0.243 4.243 6 H 0.068 0.932 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.971 3.029 10 H -0.269 1.269 11 H -0.294 1.294 12 H -0.289 1.289 13 N -0.688 5.688 14 C 0.598 3.402 15 O -0.538 6.538 16 C -0.022 4.022 17 N -0.351 5.351 18 O 0.140 5.860 19 C -0.017 4.017 20 C -0.223 4.223 21 C 0.148 3.852 22 O -0.384 6.384 23 C 0.050 3.950 24 C -0.064 4.064 25 C -0.179 4.179 26 C -0.153 4.153 27 C -0.161 4.161 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.022 0.978 33 H 0.374 0.626 34 H 0.251 0.749 35 H 0.405 0.595 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 -11.481 12.138 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.123 3.877 3 C 0.018 3.982 4 N -0.375 5.375 5 C -0.375 4.375 6 H 0.086 0.914 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.800 3.200 10 H -0.194 1.194 11 H -0.221 1.221 12 H -0.216 1.216 13 N -0.337 5.337 14 C 0.382 3.618 15 O -0.414 6.414 16 C -0.179 4.179 17 N -0.053 5.053 18 O 0.066 5.934 19 C -0.082 4.082 20 C -0.229 4.229 21 C 0.071 3.929 22 O -0.303 6.303 23 C -0.026 4.026 24 C -0.101 4.101 25 C -0.198 4.198 26 C -0.190 4.190 27 C -0.198 4.198 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.241 0.759 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.105 0.895 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.914 -11.269 11.255 20.504 hybrid contribution 1.531 0.896 -0.198 1.785 sum -11.382 -10.373 11.056 18.958 Atomic orbital electron populations 1.22225 0.92128 1.03179 1.03814 1.20032 0.94739 0.90575 0.82363 1.21125 0.84233 0.94780 0.98032 1.42358 1.00860 1.05119 1.89183 1.19622 0.89679 0.87151 1.41002 0.91401 1.25485 0.97145 1.00038 1.03756 1.69814 1.06538 1.25786 1.59700 0.85106 0.78474 0.79622 0.76797 1.19378 1.22105 1.21569 1.45844 1.48156 1.35047 1.04699 1.16968 0.79899 0.83083 0.81848 1.90693 1.39783 1.24992 1.85974 1.22977 1.02275 0.96443 0.96244 1.74656 1.16968 1.13490 1.00189 1.84605 1.54486 1.43668 1.10599 1.24774 0.95112 0.90860 0.97476 1.21585 1.06793 1.03270 0.91224 1.20778 0.98841 0.91592 0.81639 1.88099 1.34133 1.85949 1.22106 1.23126 0.88878 0.92982 0.97619 1.21344 1.06837 1.01655 0.80310 1.22258 1.00046 1.00206 0.97271 1.23207 0.99001 1.01388 0.95403 1.23025 1.03521 0.90140 1.03092 0.91825 0.89484 0.90687 0.95458 0.95979 0.79282 0.94057 0.75941 0.87136 0.91131 0.92132 0.83237 0.84587 0.85286 0.89521 0.86529 0.87902 0.87883 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 6.98 71.98 0.50 -3.95 16 2 C 0.21 7.22 0.54 3.60 0.00 7.22 16 3 C 0.15 6.51 5.03 86.38 0.43 6.95 16 4 N -0.73 -39.29 5.04 -343.46 -1.73 -41.02 16 5 C -0.24 -14.35 9.99 84.03 0.84 -13.51 16 6 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 7 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 8 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 9 Si 0.97 48.05 29.55 68.60 2.03 50.07 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 13 N -0.69 -24.67 4.72 -425.31 -2.01 -26.68 16 14 C 0.60 22.74 7.26 86.93 0.63 23.37 16 15 O -0.54 -22.17 12.53 -3.69 -0.05 -22.22 16 16 C -0.02 -0.77 7.18 42.46 0.30 -0.47 16 17 N -0.35 -11.39 11.90 -48.98 -0.58 -11.97 16 18 O 0.14 3.73 11.17 81.72 0.91 4.64 16 19 C -0.02 -0.38 7.49 25.03 0.19 -0.19 16 20 C -0.22 -6.43 6.15 -20.06 -0.12 -6.56 16 21 C 0.15 3.88 6.67 71.03 0.47 4.36 16 22 O -0.38 -8.08 10.76 -148.98 -1.60 -9.68 16 23 C 0.05 0.63 6.78 72.20 0.49 1.12 16 24 C -0.06 -0.71 6.54 29.99 0.20 -0.52 16 25 C -0.18 -5.64 4.84 -10.79 -0.05 -5.69 16 26 C -0.15 -3.60 9.64 30.62 0.30 -3.31 16 27 C -0.16 -3.81 9.82 30.62 0.30 -3.50 16 28 H 0.06 2.07 6.03 -2.38 -0.01 2.06 16 29 H 0.09 2.17 6.78 -2.39 -0.02 2.15 16 30 H 0.07 1.82 6.99 -2.39 -0.02 1.81 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.02 1.10 6.32 -2.39 -0.02 1.08 16 33 H 0.37 21.00 6.62 -92.71 -0.61 20.39 16 34 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.41 14.19 8.26 -92.71 -0.77 13.42 16 36 H 0.11 3.03 8.00 -2.39 -0.02 3.01 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 39 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 3.41 7.09 -2.39 -0.02 3.39 16 43 H 0.12 2.37 5.88 -2.39 -0.01 2.35 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.10 2.23 7.35 -2.39 -0.02 2.21 16 Total: -1.00 -75.81 371.00 1.86 -73.94 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -0.34 Total: 41.91 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.95 Total: 1.48 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -4.04 Total: -140.15 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.74 Total: -27.26 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.07 kcal Total: -75.81 1.86 -73.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267865164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.598 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds