Wall clock time and date at job start Tue Mar 31 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 N 1.46503 * 109.47125 * 300.00003 * 3 2 1 5 5 C 1.36932 * 120.00219 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99966 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00147 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46862 * 89.99974 * 9 7 5 11 11 H 1.48497 * 109.47234 * 209.99698 * 9 7 5 12 12 H 1.48494 * 109.47081 * 330.00263 * 9 7 5 13 13 N 1.46496 * 109.47224 * 239.99753 * 2 1 3 14 14 C 1.34772 * 120.00358 * 183.94575 * 13 2 1 15 15 O 1.21504 * 119.99512 * 5.19072 * 14 13 2 16 16 C 1.48324 * 120.00436 * 185.19324 * 14 13 2 17 17 N 1.31600 * 127.15804 * 0.02562 * 16 14 13 18 18 O 1.21557 * 111.55139 * 179.97438 * 17 16 14 19 19 C 1.32816 * 111.51744 * 359.96158 * 18 17 16 20 20 C 1.35709 * 106.70019 * 359.80556 * 19 18 17 21 21 C 1.50036 * 123.85852 * 179.42116 * 20 19 18 22 22 O 1.43617 * 107.89087 * 345.87954 * 21 20 19 23 23 C 1.42995 * 114.37828 * 49.76753 * 22 21 20 24 24 C 1.50670 * 130.82593 * 180.19028 * 19 18 17 25 25 C 1.53001 * 109.47091 * 119.99656 * 2 1 3 26 26 C 1.53006 * 117.51736 * 348.45456 * 25 2 1 27 27 C 1.53006 * 60.00146 * 107.47907 * 26 25 2 28 28 H 1.09003 * 109.46770 * 300.00433 * 1 2 3 29 29 H 1.09001 * 109.46686 * 60.00184 * 1 2 3 30 30 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47329 * 59.99617 * 3 2 1 32 32 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 33 33 H 0.97003 * 119.99504 * 359.97438 * 4 3 2 34 34 H 0.97008 * 120.00179 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99662 * 3.93997 * 13 2 1 36 36 H 1.09001 * 109.96312 * 226.15882 * 21 20 19 37 37 H 1.09001 * 109.60515 * 105.39057 * 21 20 19 38 38 H 1.09005 * 109.39914 * 169.45044 * 23 22 21 39 39 H 1.08998 * 109.33340 * 49.66702 * 23 22 21 40 40 H 1.08998 * 109.82391 * 283.57265 * 24 19 18 41 41 H 1.08997 * 109.82339 * 44.50451 * 24 19 18 42 42 H 1.09000 * 115.55170 * 202.75367 * 25 2 1 43 43 H 1.09002 * 117.49846 * 214.96841 * 26 25 2 44 44 H 1.09000 * 117.49618 * 359.97438 * 26 25 2 45 45 H 1.08997 * 117.50106 * 252.51118 * 27 26 25 46 46 H 1.08999 * 117.49471 * 107.48469 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8830 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4207 4.0981 -2.5469 8 7 0.6644 3.4583 -3.4134 9 14 1.8719 5.8865 -2.8425 10 1 3.1350 5.9562 -3.6204 11 1 0.7845 6.5521 -3.6038 12 1 2.0552 6.5728 -1.5386 13 7 2.0184 -0.6906 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1210 -0.5705 -0.4929 16 6 3.8438 -1.4789 -2.6322 17 7 3.1303 -1.8667 -3.6678 18 8 3.8339 -2.3144 -4.5522 19 6 5.1185 -2.2813 -4.2166 20 6 5.1831 -1.7402 -2.9738 21 6 6.4622 -1.5350 -2.2168 22 8 7.4899 -2.2933 -2.8734 23 6 7.5661 -2.0847 -4.2861 24 6 6.3461 -2.7159 -4.9745 25 6 2.0401 -0.7212 1.2493 26 6 1.0222 -1.0407 2.3461 27 6 1.5801 -2.1638 1.4694 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9943 1.6615 -1.8349 34 1 0.3410 3.9155 -4.2055 35 1 1.3899 -1.0090 -1.8629 36 1 6.3466 -1.8818 -1.1899 37 1 6.7242 -0.4769 -2.2215 38 1 8.4767 -2.5436 -4.6712 39 1 7.5847 -1.0146 -4.4923 40 1 6.4296 -3.8024 -4.9511 41 1 6.2846 -2.3712 -6.0067 42 1 3.0518 -0.4623 1.5615 43 1 1.3644 -0.9921 3.3799 44 1 -0.0109 -0.7368 2.1779 45 1 0.9140 -2.5989 0.7245 46 1 2.2893 -2.8539 1.9265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267865165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:21 Heat of formation + Delta-G solvation = 31.919781 kcal Electronic energy + Delta-G solvation = -30242.920486 eV Core-core repulsion = 26137.850897 eV Total energy + Delta-G solvation = -4105.069588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.13283 -40.10311 -39.05033 -37.66741 -35.01105 -34.08941 -33.54867 -33.24467 -31.36292 -30.61833 -29.33092 -26.68850 -26.23343 -24.67789 -24.18623 -23.62069 -22.25971 -21.42069 -21.16622 -20.17579 -18.70271 -17.99244 -17.88478 -17.25898 -16.90271 -16.17874 -16.03901 -15.63457 -15.22834 -15.03701 -14.58861 -14.44829 -14.25634 -13.93586 -13.83831 -13.53580 -13.20318 -13.00486 -12.85255 -12.39116 -12.12730 -11.97715 -11.88837 -11.55256 -11.35726 -11.30247 -11.09017 -10.91604 -10.81529 -10.68489 -10.42988 -10.34522 -10.15850 -10.04055 -9.92059 -9.69019 -9.58685 -9.24469 -8.84052 -8.68900 -6.87729 -5.74547 -3.01899 1.13869 1.58500 2.71024 3.10373 3.41026 3.44321 3.49044 3.49581 3.51157 3.95611 4.13335 4.31109 4.52503 4.57715 4.66178 4.76321 4.84419 4.92486 5.07585 5.12989 5.18088 5.24411 5.32078 5.35495 5.43255 5.45322 5.52045 5.61219 5.62932 5.64749 5.75230 5.87034 5.93622 5.99535 6.18651 6.20816 6.25912 6.48364 6.49117 6.59984 6.78769 6.82547 6.99779 7.68754 7.73361 8.00294 8.39794 8.44290 9.55684 10.12888 10.48394 11.48438 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008455 B = 0.004600 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.799813 B = 6085.696286 C = 8175.970027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.200 3.800 3 C 0.146 3.854 4 N -0.728 5.728 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 N -0.691 5.691 14 C 0.609 3.391 15 O -0.517 6.517 16 C 0.005 3.995 17 N -0.330 5.330 18 O 0.131 5.869 19 C -0.036 4.036 20 C -0.199 4.199 21 C 0.142 3.858 22 O -0.377 6.377 23 C 0.060 3.940 24 C -0.067 4.067 25 C -0.144 4.144 26 C -0.180 4.180 27 C -0.176 4.176 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.403 0.597 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 -16.585 1.155 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.115 3.885 3 C 0.018 3.982 4 N -0.372 5.372 5 C -0.365 4.365 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.584 5.584 9 Si 0.737 3.263 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.207 1.207 13 N -0.341 5.341 14 C 0.392 3.608 15 O -0.392 6.392 16 C -0.153 4.153 17 N -0.033 5.033 18 O 0.060 5.940 19 C -0.101 4.101 20 C -0.204 4.204 21 C 0.065 3.935 22 O -0.295 6.295 23 C -0.017 4.017 24 C -0.105 4.105 25 C -0.164 4.164 26 C -0.217 4.217 27 C -0.213 4.213 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.238 0.762 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.135 0.865 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.896 -16.245 1.716 18.144 hybrid contribution 0.068 1.044 -0.806 1.321 sum 7.964 -15.201 0.910 17.185 Atomic orbital electron populations 1.22135 0.93194 1.01511 1.04404 1.20135 0.93809 0.92397 0.82180 1.21010 0.97819 0.88025 0.91331 1.42287 1.61338 1.10571 1.23030 1.19224 1.25284 0.87592 1.04391 0.91281 1.24696 1.00667 0.98217 0.97434 1.69653 1.39572 1.36076 1.13084 0.86205 0.77381 0.85054 0.77689 1.21895 1.21807 1.20741 1.45813 1.06253 1.58098 1.23964 1.16613 0.82925 0.77803 0.83417 1.90723 1.56057 1.50837 1.41556 1.22988 0.91255 1.04474 0.96622 1.74684 1.17935 1.12847 0.97882 1.84643 1.14670 1.58881 1.35852 1.23950 0.87171 1.03032 0.95978 1.21318 0.96563 1.05822 0.96744 1.20973 0.80092 0.96762 0.95667 1.88104 1.53815 1.67859 1.19704 1.22738 0.96886 1.00671 0.81451 1.21018 0.87006 1.02915 0.99573 1.22605 0.99997 0.97333 0.96449 1.23141 0.99454 1.03300 0.95848 1.22814 1.03726 0.91624 1.03115 0.90368 0.90516 0.92720 0.95297 0.94450 0.78383 0.93643 0.76236 0.86144 0.90262 0.87012 0.91937 0.87884 0.87739 0.86467 0.89066 0.88133 0.89253 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 7.04 37.16 0.26 -2.10 16 2 C 0.20 3.38 0.54 -131.82 -0.07 3.31 16 3 C 0.15 3.13 5.02 -4.04 -0.02 3.11 16 4 N -0.73 -18.64 5.17 -59.91 -0.31 -18.95 16 5 C -0.23 -6.70 9.99 -15.06 -0.15 -6.85 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 9 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.69 -11.88 4.71 -48.39 -0.23 -12.11 16 14 C 0.61 11.13 7.26 -12.11 -0.09 11.05 16 15 O -0.52 -10.06 13.11 5.36 0.07 -9.99 16 16 C 0.01 0.09 7.18 -82.90 -0.59 -0.51 16 17 N -0.33 -5.49 11.90 33.25 0.40 -5.09 16 18 O 0.13 1.89 11.17 20.04 0.22 2.11 16 19 C -0.04 -0.45 7.50 -35.23 -0.26 -0.72 16 20 C -0.20 -2.93 6.15 -104.93 -0.65 -3.58 16 21 C 0.14 1.85 6.67 35.69 0.24 2.08 16 22 O -0.38 -4.29 10.76 -35.23 -0.38 -4.67 16 23 C 0.06 0.48 6.77 37.49 0.25 0.73 16 24 C -0.07 -0.52 6.56 -27.56 -0.18 -0.70 16 25 C -0.14 -2.16 4.05 -90.61 -0.37 -2.53 16 26 C -0.18 -2.20 9.62 -26.72 -0.26 -2.46 16 27 C -0.18 -2.22 9.81 -26.72 -0.26 -2.48 16 28 H 0.08 1.13 6.84 -51.93 -0.36 0.77 16 29 H 0.08 1.35 6.86 -51.93 -0.36 0.99 16 30 H 0.05 0.70 7.01 -51.93 -0.36 0.33 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.88 6.64 -51.93 -0.34 0.54 16 33 H 0.38 10.13 6.35 -40.82 -0.26 9.87 16 34 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.40 6.61 8.26 -40.82 -0.34 6.28 16 36 H 0.12 1.58 8.00 -51.93 -0.42 1.17 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.12 1.95 7.17 -51.93 -0.37 1.58 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.10 1.17 5.87 -51.93 -0.30 0.86 16 45 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 46 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -33.65 372.07 -7.58 -41.23 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.42 Total: 13.92 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.24 Total: -2.15 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.58 Total: -63.96 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.09 Total: -12.55 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.65 -7.58 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267865165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.151 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds