Wall clock time and date at job start Tue Mar 31 2020 18:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 N 1.46503 * 109.47125 * 300.00003 * 3 2 1 5 5 C 1.36932 * 120.00219 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99966 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00147 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46862 * 89.99974 * 9 7 5 11 11 H 1.48497 * 109.47234 * 209.99698 * 9 7 5 12 12 H 1.48494 * 109.47081 * 330.00263 * 9 7 5 13 13 N 1.46496 * 109.47224 * 239.99753 * 2 1 3 14 14 C 1.34772 * 120.00358 * 183.94575 * 13 2 1 15 15 O 1.21504 * 119.99512 * 5.19072 * 14 13 2 16 16 C 1.48324 * 120.00436 * 185.19324 * 14 13 2 17 17 N 1.31600 * 127.15804 * 0.02562 * 16 14 13 18 18 O 1.21557 * 111.55139 * 179.97438 * 17 16 14 19 19 C 1.32816 * 111.51744 * 359.96158 * 18 17 16 20 20 C 1.35709 * 106.70019 * 359.80556 * 19 18 17 21 21 C 1.50036 * 123.85852 * 179.42116 * 20 19 18 22 22 O 1.43617 * 107.89087 * 345.87954 * 21 20 19 23 23 C 1.42995 * 114.37828 * 49.76753 * 22 21 20 24 24 C 1.50670 * 130.82593 * 180.19028 * 19 18 17 25 25 C 1.53001 * 109.47091 * 119.99656 * 2 1 3 26 26 C 1.53006 * 117.51736 * 348.45456 * 25 2 1 27 27 C 1.53006 * 60.00146 * 107.47907 * 26 25 2 28 28 H 1.09003 * 109.46770 * 300.00433 * 1 2 3 29 29 H 1.09001 * 109.46686 * 60.00184 * 1 2 3 30 30 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47329 * 59.99617 * 3 2 1 32 32 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 33 33 H 0.97003 * 119.99504 * 359.97438 * 4 3 2 34 34 H 0.97008 * 120.00179 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99662 * 3.93997 * 13 2 1 36 36 H 1.09001 * 109.96312 * 226.15882 * 21 20 19 37 37 H 1.09001 * 109.60515 * 105.39057 * 21 20 19 38 38 H 1.09005 * 109.39914 * 169.45044 * 23 22 21 39 39 H 1.08998 * 109.33340 * 49.66702 * 23 22 21 40 40 H 1.08998 * 109.82391 * 283.57265 * 24 19 18 41 41 H 1.08997 * 109.82339 * 44.50451 * 24 19 18 42 42 H 1.09000 * 115.55170 * 202.75367 * 25 2 1 43 43 H 1.09002 * 117.49846 * 214.96841 * 26 25 2 44 44 H 1.09000 * 117.49618 * 359.97438 * 26 25 2 45 45 H 1.08997 * 117.50106 * 252.51118 * 27 26 25 46 46 H 1.08999 * 117.49471 * 107.48469 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8830 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4207 4.0981 -2.5469 8 7 0.6644 3.4583 -3.4134 9 14 1.8719 5.8865 -2.8425 10 1 3.1350 5.9562 -3.6204 11 1 0.7845 6.5521 -3.6038 12 1 2.0552 6.5728 -1.5386 13 7 2.0184 -0.6906 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1210 -0.5705 -0.4929 16 6 3.8438 -1.4789 -2.6322 17 7 3.1303 -1.8667 -3.6678 18 8 3.8339 -2.3144 -4.5522 19 6 5.1185 -2.2813 -4.2166 20 6 5.1831 -1.7402 -2.9738 21 6 6.4622 -1.5350 -2.2168 22 8 7.4899 -2.2933 -2.8734 23 6 7.5661 -2.0847 -4.2861 24 6 6.3461 -2.7159 -4.9745 25 6 2.0401 -0.7212 1.2493 26 6 1.0222 -1.0407 2.3461 27 6 1.5801 -2.1638 1.4694 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9943 1.6615 -1.8349 34 1 0.3410 3.9155 -4.2055 35 1 1.3899 -1.0090 -1.8629 36 1 6.3466 -1.8818 -1.1899 37 1 6.7242 -0.4769 -2.2215 38 1 8.4767 -2.5436 -4.6712 39 1 7.5847 -1.0146 -4.4923 40 1 6.4296 -3.8024 -4.9511 41 1 6.2846 -2.3712 -6.0067 42 1 3.0518 -0.4623 1.5615 43 1 1.3644 -0.9921 3.3799 44 1 -0.0109 -0.7368 2.1779 45 1 0.9140 -2.5989 0.7245 46 1 2.2893 -2.8539 1.9265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267865165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:20 Heat of formation + Delta-G solvation = 8.204600 kcal Electronic energy + Delta-G solvation = -30243.948853 eV Core-core repulsion = 26137.850897 eV Total energy + Delta-G solvation = -4106.097956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.31139 -41.47643 -39.92703 -38.96269 -36.65773 -35.36870 -35.05192 -34.24489 -33.13860 -31.70577 -30.89501 -27.90601 -27.69811 -26.12934 -25.37921 -24.93393 -23.35340 -22.93864 -22.33430 -21.32972 -20.11672 -19.34090 -19.10299 -18.95971 -18.03330 -17.33297 -17.14311 -16.86154 -16.59303 -16.36022 -15.95174 -15.87155 -15.58434 -15.37849 -15.06763 -14.69315 -14.59564 -14.48212 -13.83920 -13.78149 -13.66139 -13.35357 -13.02053 -12.86506 -12.83494 -12.68953 -12.52881 -12.22009 -12.17055 -12.06653 -12.05015 -11.80594 -11.58587 -11.52423 -11.12261 -11.01981 -10.94288 -10.83625 -10.29002 -10.12027 -9.02591 -7.99284 -5.27148 -0.04617 0.44698 1.41725 1.43216 1.52159 1.67343 1.84671 2.07460 2.51098 2.59587 2.80155 3.03704 3.33498 3.39981 3.49945 3.55495 3.71106 3.85802 3.95281 4.01307 4.12132 4.16043 4.19518 4.26063 4.28309 4.32509 4.42965 4.45246 4.64514 4.71917 4.78931 4.80332 4.85005 4.87737 4.91635 4.96706 4.97653 5.06454 5.23136 5.26908 5.34914 5.42290 5.48718 5.96741 6.22116 6.32885 6.82870 7.01868 7.29604 8.02912 8.30076 9.23711 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008455 B = 0.004600 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.799813 B = 6085.696286 C = 8175.970027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.207 3.793 3 C 0.149 3.851 4 N -0.733 5.733 5 C -0.246 4.246 6 H 0.067 0.933 7 C -0.069 4.069 8 N -0.965 5.965 9 Si 0.970 3.030 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.689 5.689 14 C 0.602 3.398 15 O -0.538 6.538 16 C -0.022 4.022 17 N -0.351 5.351 18 O 0.138 5.862 19 C -0.019 4.019 20 C -0.224 4.224 21 C 0.150 3.850 22 O -0.384 6.384 23 C 0.050 3.950 24 C -0.063 4.063 25 C -0.168 4.168 26 C -0.160 4.160 27 C -0.163 4.163 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.012 0.988 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.405 0.595 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.151 0.849 39 H 0.059 0.941 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.094 -17.769 0.774 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.122 3.878 3 C 0.021 3.979 4 N -0.376 5.376 5 C -0.378 4.378 6 H 0.085 0.915 7 C -0.262 4.262 8 N -0.616 5.616 9 Si 0.799 3.201 10 H -0.218 1.218 11 H -0.217 1.217 12 H -0.195 1.195 13 N -0.339 5.339 14 C 0.386 3.614 15 O -0.414 6.414 16 C -0.179 4.179 17 N -0.054 5.054 18 O 0.065 5.935 19 C -0.084 4.084 20 C -0.230 4.230 21 C 0.073 3.927 22 O -0.302 6.302 23 C -0.026 4.026 24 C -0.101 4.101 25 C -0.187 4.187 26 C -0.197 4.197 27 C -0.200 4.200 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.240 0.760 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.168 0.832 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.114 0.886 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.487 -17.439 1.367 19.442 hybrid contribution -0.017 1.362 -0.728 1.544 sum 8.470 -16.077 0.639 18.183 Atomic orbital electron populations 1.22083 0.91568 1.03190 1.03564 1.20017 0.94827 0.89793 0.83185 1.21048 0.96228 0.90927 0.89655 1.42384 1.61161 1.09962 1.24117 1.19562 1.24852 0.88955 1.04411 0.91467 1.25479 1.01042 1.02339 0.97341 1.69802 1.40759 1.37587 1.13441 0.85187 0.76812 0.80251 0.77820 1.21799 1.21661 1.19492 1.45849 1.06120 1.57712 1.24181 1.16901 0.83080 0.77623 0.83810 1.90698 1.56513 1.51770 1.42377 1.23025 0.92635 1.05749 0.96537 1.74653 1.18773 1.13767 0.98200 1.84603 1.15597 1.58179 1.35127 1.24846 0.87413 1.00651 0.95497 1.21590 0.96189 1.07063 0.98124 1.20763 0.80108 0.96371 0.95488 1.88095 1.52866 1.67478 1.21799 1.23125 0.98635 1.01218 0.79617 1.21383 0.83914 1.04448 1.00338 1.22345 0.99894 0.99598 0.96876 1.23266 0.99085 1.01519 0.95818 1.22875 1.03490 0.90548 1.03071 0.89304 0.93159 0.89725 0.95106 0.96996 0.79113 0.93997 0.75962 0.87108 0.91235 0.83171 0.92210 0.85255 0.84658 0.88713 0.87503 0.86979 0.88591 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 7.04 71.98 0.51 -3.87 16 2 C 0.21 7.12 0.54 3.61 0.00 7.12 16 3 C 0.15 6.60 5.02 86.38 0.43 7.04 16 4 N -0.73 -38.78 5.17 -343.46 -1.78 -40.56 16 5 C -0.25 -14.40 9.99 84.03 0.84 -13.57 16 6 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 7 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 8 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 9 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 10 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.69 -24.52 4.71 -425.31 -2.00 -26.52 16 14 C 0.60 23.07 7.26 86.93 0.63 23.70 16 15 O -0.54 -22.15 13.11 -3.73 -0.05 -22.20 16 16 C -0.02 -0.79 7.18 42.46 0.30 -0.49 16 17 N -0.35 -11.91 11.90 -48.99 -0.58 -12.50 16 18 O 0.14 3.89 11.17 81.72 0.91 4.80 16 19 C -0.02 -0.45 7.50 25.09 0.19 -0.26 16 20 C -0.22 -6.69 6.15 -20.07 -0.12 -6.81 16 21 C 0.15 4.01 6.67 71.03 0.47 4.49 16 22 O -0.38 -8.30 10.76 -148.98 -1.60 -9.90 16 23 C 0.05 0.67 6.77 72.20 0.49 1.16 16 24 C -0.06 -0.77 6.56 30.06 0.20 -0.57 16 25 C -0.17 -4.99 4.05 -10.79 -0.04 -5.04 16 26 C -0.16 -3.56 9.62 30.60 0.29 -3.26 16 27 C -0.16 -3.85 9.81 30.60 0.30 -3.55 16 28 H 0.09 2.45 6.84 -2.39 -0.02 2.43 16 29 H 0.05 1.78 6.86 -2.39 -0.02 1.77 16 30 H 0.08 2.01 7.01 -2.39 -0.02 1.99 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.01 0.60 6.64 -2.39 -0.02 0.58 16 33 H 0.38 20.65 6.35 -92.71 -0.59 20.07 16 34 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 35 H 0.41 13.79 8.26 -92.71 -0.77 13.02 16 36 H 0.11 3.10 8.00 -2.39 -0.02 3.08 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.15 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 40 H 0.13 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 3.27 7.17 -2.39 -0.02 3.25 16 43 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 44 H 0.11 2.27 5.87 -2.39 -0.01 2.25 16 45 H 0.10 2.16 7.42 -2.39 -0.02 2.14 16 46 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -75.25 372.07 1.85 -73.40 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -0.32 Total: 41.09 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 4.96 Total: 2.45 kcal Atomic # 7 Polarization: -135.17 SS G_CDS: -4.08 Total: -139.25 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.74 Total: -27.30 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -75.25 1.85 -73.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267865165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.606 kcal (2) G-P(sol) polarization free energy of solvation -75.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds