Wall clock time and date at job start Tue Mar 31 2020 18:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 N 1.46500 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99746 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00281 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00080 * 179.97438 * 5 4 3 8 8 N 1.31622 * 119.99918 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00383 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46544 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46891 * 120.00313 * 9 7 5 12 12 H 1.48497 * 109.47120 * 240.00514 * 9 7 5 13 13 N 1.46503 * 109.46475 * 120.00041 * 2 1 3 14 14 C 1.34781 * 120.00092 * 304.29431 * 13 2 1 15 15 O 1.21606 * 119.99588 * 354.99060 * 14 13 2 16 16 C 1.47374 * 119.99682 * 175.26516 * 14 13 2 17 17 C 1.47015 * 127.19723 * 359.74933 * 16 14 13 18 18 C 1.34175 * 105.95661 * 179.97438 * 17 16 14 19 19 O 1.34215 * 109.12580 * 0.02562 * 18 17 16 20 20 C 1.33655 * 110.90742 * 359.72335 * 19 18 17 21 21 C 1.50698 * 125.80654 * 180.29035 * 20 19 18 22 22 C 1.50708 * 109.46866 * 270.18946 * 21 20 19 23 23 N 1.34779 * 119.99449 * 179.97438 * 22 21 20 24 24 O 1.21271 * 120.00136 * 359.97438 * 22 21 20 25 25 C 1.53000 * 109.47113 * 239.99753 * 2 1 3 26 26 C 1.52994 * 117.49915 * 12.76059 * 25 2 1 27 27 C 1.53001 * 117.49798 * 304.10330 * 25 2 1 28 28 H 1.08990 * 109.47528 * 300.00646 * 1 2 3 29 29 H 1.09004 * 109.46953 * 60.00529 * 1 2 3 30 30 H 1.09001 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47195 * 299.99642 * 3 2 1 32 32 H 1.09005 * 109.47056 * 59.99667 * 3 2 1 33 33 H 0.96994 * 119.99963 * 359.97438 * 4 3 2 34 34 H 0.96996 * 120.00086 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00006 * 124.29937 * 13 2 1 36 36 H 1.08006 * 127.02272 * 359.97438 * 17 16 14 37 37 H 1.08003 * 125.43870 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.46689 * 30.18295 * 21 20 19 39 39 H 1.08991 * 109.47538 * 150.18863 * 21 20 19 40 40 H 0.96998 * 120.00421 * 359.97438 * 23 22 21 41 41 H 0.97000 * 119.99556 * 179.97438 * 23 22 21 42 42 H 1.09000 * 115.54462 * 158.43541 * 25 2 1 43 43 H 1.09001 * 117.50414 * 0.02562 * 26 25 2 44 44 H 1.08999 * 117.49658 * 145.01795 * 26 25 2 45 45 H 1.09007 * 117.49301 * 214.98112 * 27 25 2 46 46 H 1.08998 * 117.49912 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1897 2.6283 0.0002 6 1 3.6498 3.5637 -0.0002 7 6 5.5778 2.6283 0.0013 8 7 6.2359 1.4884 0.0023 9 14 6.5119 4.2460 0.0015 10 1 5.5469 5.3747 0.0009 11 1 7.3647 4.3250 1.2146 12 1 7.3665 4.3243 -1.2104 13 7 2.0182 -0.6907 1.1962 14 6 1.6227 -0.2828 2.4185 15 8 0.9345 0.7131 2.5339 16 6 2.0294 -1.0404 3.6154 17 6 2.8537 -2.2569 3.6596 18 6 2.9589 -2.5842 4.9566 19 8 2.2818 -1.6889 5.6924 20 6 1.7241 -0.7562 4.9143 21 6 0.8961 0.4094 5.3905 22 6 -0.5546 0.0050 5.4474 23 7 -1.4862 0.8924 5.8489 24 8 -0.8837 -1.1187 5.1318 25 6 2.0400 -0.7213 -1.2492 26 6 1.0276 -1.0154 -2.3579 27 6 1.5581 -2.1544 -1.4837 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.9900 0.6024 0.0013 34 1 7.2059 1.4884 0.0027 35 1 2.6262 -1.4414 1.1087 36 1 3.2864 -2.7803 2.8197 37 1 3.5018 -3.4326 5.3463 38 1 1.2288 0.7094 6.3842 39 1 1.0137 1.2447 4.7003 40 1 -1.2229 1.7911 6.1017 41 1 -2.4199 0.6323 5.8852 42 1 3.0590 -0.4774 -1.5497 43 1 -0.0017 -0.6946 -2.1977 44 1 1.3806 -0.9653 -3.3880 45 1 2.2600 -2.8532 -1.9390 46 1 0.8780 -2.5834 -0.7479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495277764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:24 Heat of formation + Delta-G solvation = -45.673386 kcal Electronic energy + Delta-G solvation = -30202.653180 eV Core-core repulsion = 26094.218899 eV Total energy + Delta-G solvation = -4108.434281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.55103 -41.22388 -40.39679 -38.89747 -36.35980 -35.02459 -34.73675 -34.09910 -33.09332 -32.69461 -31.11368 -28.48127 -27.58317 -25.52568 -24.37670 -23.81985 -23.13724 -22.53202 -21.77028 -20.63096 -19.97493 -19.20994 -19.11154 -18.27114 -17.97677 -17.24222 -16.93866 -16.81543 -16.51912 -16.29205 -16.16532 -15.76199 -15.50512 -15.33259 -14.96832 -14.77792 -14.47115 -14.14877 -13.95498 -13.80744 -13.73817 -13.59096 -13.19590 -13.07412 -12.81327 -12.71278 -12.45668 -12.19370 -12.07442 -11.98768 -11.74173 -11.27009 -11.24406 -11.07434 -10.93876 -10.75220 -10.69217 -10.58577 -9.93203 -9.54932 -8.92262 -7.93088 -5.19171 0.33389 1.17849 1.45592 1.46026 1.56265 1.57201 1.77871 2.21805 2.40029 2.56707 2.71630 3.04344 3.39686 3.47485 3.60371 3.80768 3.90475 3.93404 3.95864 4.02368 4.16374 4.18612 4.23930 4.42181 4.46066 4.58428 4.63676 4.77055 4.82022 4.86440 4.93602 4.97461 4.99958 5.02289 5.14093 5.29242 5.30955 5.39204 5.43935 5.49834 5.71511 5.86565 6.03015 6.29222 6.39086 6.69400 7.29178 7.34253 7.36583 8.11745 8.39701 9.30300 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009237 B = 0.004257 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.406338 B = 6576.553940 C = 7692.970953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.212 3.788 3 C 0.148 3.852 4 N -0.729 5.729 5 C -0.240 4.240 6 H 0.065 0.935 7 C -0.070 4.070 8 N -0.965 5.965 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.291 1.291 13 N -0.696 5.696 14 C 0.589 3.411 15 O -0.565 6.565 16 C -0.249 4.249 17 C -0.204 4.204 18 C -0.023 4.023 19 O -0.177 6.177 20 C 0.071 3.929 21 C -0.071 4.071 22 C 0.529 3.471 23 N -0.830 5.830 24 O -0.587 6.587 25 C -0.175 4.175 26 C -0.160 4.160 27 C -0.158 4.158 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.403 0.597 36 H 0.173 0.827 37 H 0.253 0.747 38 H 0.149 0.851 39 H 0.135 0.865 40 H 0.420 0.580 41 H 0.410 0.590 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 -8.287 9.282 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 C 0.020 3.980 4 N -0.372 5.372 5 C -0.372 4.372 6 H 0.083 0.917 7 C -0.262 4.262 8 N -0.616 5.616 9 Si 0.798 3.202 10 H -0.196 1.196 11 H -0.221 1.221 12 H -0.218 1.218 13 N -0.345 5.345 14 C 0.378 3.622 15 O -0.447 6.447 16 C -0.254 4.254 17 C -0.223 4.223 18 C -0.089 4.089 19 O -0.073 6.073 20 C 0.018 3.982 21 C -0.110 4.110 22 C 0.314 3.686 23 N -0.395 5.395 24 O -0.467 6.467 25 C -0.194 4.194 26 C -0.197 4.197 27 C -0.195 4.195 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.239 0.761 36 H 0.191 0.809 37 H 0.269 0.731 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.252 0.748 41 H 0.242 0.758 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.672 -8.139 9.415 18.488 hybrid contribution 1.256 0.641 -0.272 1.437 sum -12.416 -7.498 9.143 17.145 Atomic orbital electron populations 1.22181 0.93129 1.02620 1.03186 1.19851 0.94006 0.90571 0.82938 1.21086 0.84312 0.94952 0.97629 1.42310 1.00726 1.05092 1.89056 1.19592 0.89648 0.87149 1.40857 0.91671 1.25423 0.97068 0.99849 1.03908 1.69800 1.06458 1.25561 1.59747 0.85145 0.78492 0.79840 0.76738 1.19589 1.22065 1.21793 1.45670 1.48917 1.35306 1.04635 1.17374 0.78914 0.83027 0.82881 1.90603 1.40861 1.26564 1.86693 1.21373 1.09005 1.01403 0.93600 1.23143 1.02894 0.97009 0.99264 1.24672 0.98836 0.95622 0.89731 1.83706 1.53329 1.31773 1.38494 1.22015 0.96477 0.91584 0.88168 1.20394 0.89507 0.93926 1.07154 1.20316 0.88399 0.84653 0.75209 1.43525 1.10449 1.16359 1.69137 1.90735 1.83040 1.22726 1.50226 1.22268 0.99883 1.00071 0.97199 1.23181 0.98992 1.02012 0.95541 1.23012 1.03468 0.90155 1.02901 0.92252 0.90143 0.91318 0.96254 0.95975 0.79089 0.94104 0.76149 0.80920 0.73117 0.83309 0.84715 0.74840 0.75764 0.89305 0.87063 0.87991 0.87618 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 6.98 71.98 0.50 -4.18 16 2 C 0.21 7.39 0.54 3.60 0.00 7.40 16 3 C 0.15 6.60 5.03 86.38 0.43 7.03 16 4 N -0.73 -38.36 5.04 -343.45 -1.73 -40.09 16 5 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 6 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 7 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 8 N -0.96 -59.10 13.06 21.65 0.28 -58.82 16 9 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 N -0.70 -24.24 4.72 -426.18 -2.01 -26.26 16 14 C 0.59 22.28 7.22 86.65 0.63 22.91 16 15 O -0.57 -23.25 11.08 -4.05 -0.04 -23.29 16 16 C -0.25 -8.43 6.31 -18.99 -0.12 -8.55 16 17 C -0.20 -5.50 10.60 23.65 0.25 -5.24 16 18 C -0.02 -0.53 12.03 66.89 0.80 0.28 16 19 O -0.18 -4.83 10.52 4.44 0.05 -4.78 16 20 C 0.07 2.18 5.87 25.26 0.15 2.33 16 21 C -0.07 -1.73 5.70 29.10 0.17 -1.57 16 22 C 0.53 13.63 8.09 87.66 0.71 14.34 16 23 N -0.83 -12.88 8.87 -173.53 -1.54 -14.42 16 24 O -0.59 -20.71 16.87 -3.00 -0.05 -20.76 16 25 C -0.18 -5.49 4.84 -10.80 -0.05 -5.54 16 26 C -0.16 -3.88 9.64 30.61 0.30 -3.59 16 27 C -0.16 -3.71 9.82 30.62 0.30 -3.41 16 28 H 0.06 2.09 6.03 -2.39 -0.01 2.08 16 29 H 0.08 2.18 6.78 -2.39 -0.02 2.16 16 30 H 0.07 1.86 6.98 -2.39 -0.02 1.85 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.02 1.10 6.32 -2.38 -0.02 1.08 16 33 H 0.38 20.48 6.62 -92.71 -0.61 19.86 16 34 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.40 12.82 7.66 -92.71 -0.71 12.11 16 36 H 0.17 3.84 7.75 -2.91 -0.02 3.82 16 37 H 0.25 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.14 3.64 6.49 -2.39 -0.02 3.63 16 40 H 0.42 3.66 8.83 -92.71 -0.82 2.85 16 41 H 0.41 5.42 8.93 -92.71 -0.83 4.59 16 42 H 0.09 3.42 7.09 -2.39 -0.02 3.40 16 43 H 0.11 2.43 5.88 -2.39 -0.01 2.42 16 44 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.10 2.22 7.35 -2.39 -0.02 2.21 16 Total: -1.00 -82.58 378.68 0.46 -82.12 By element: Atomic # 1 Polarization: 53.49 SS G_CDS: -1.89 Total: 51.60 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 5.37 Total: 5.41 kcal Atomic # 7 Polarization: -134.58 SS G_CDS: -5.00 Total: -139.58 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.05 Total: -48.83 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -82.58 0.46 -82.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495277764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.449 kcal (2) G-P(sol) polarization free energy of solvation -82.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds