Wall clock time and date at job start Tue Mar 31 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 N 1.46499 * 109.47180 * 300.00712 * 3 2 1 5 5 C 1.36929 * 120.00234 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00342 * 359.72414 * 5 4 3 7 7 C 1.38817 * 120.00351 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99816 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46955 * 60.00609 * 9 7 5 11 11 H 1.48501 * 109.47283 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47328 * 300.00516 * 9 7 5 13 13 N 1.46502 * 109.46796 * 240.00248 * 2 1 3 14 14 C 1.34776 * 119.99900 * 173.96311 * 13 2 1 15 15 O 1.21616 * 120.00155 * 5.26991 * 14 13 2 16 16 C 1.47384 * 120.00181 * 185.26912 * 14 13 2 17 17 C 1.47014 * 127.18834 * 359.68645 * 16 14 13 18 18 C 1.34183 * 105.95239 * 179.82585 * 17 16 14 19 19 O 1.34216 * 109.12066 * 0.44213 * 18 17 16 20 20 C 1.33650 * 110.91275 * 359.70303 * 19 18 17 21 21 C 1.50692 * 125.80541 * 180.02562 * 20 19 18 22 22 C 1.50707 * 109.46877 * 269.99841 * 21 20 19 23 23 N 1.34777 * 120.00177 * 179.97438 * 22 21 20 24 24 O 1.21284 * 120.00005 * 359.97438 * 22 21 20 25 25 C 1.53000 * 109.47595 * 120.00248 * 2 1 3 26 26 C 1.52999 * 117.50230 * 123.07631 * 25 2 1 27 27 C 1.52996 * 60.00182 * 252.51426 * 26 25 2 28 28 H 1.08999 * 109.47521 * 60.00062 * 1 2 3 29 29 H 1.09010 * 109.47343 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47047 * 299.99660 * 1 2 3 31 31 H 1.08999 * 109.47678 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46664 * 59.99686 * 3 2 1 33 33 H 0.97007 * 119.99981 * 359.97438 * 4 3 2 34 34 H 0.96995 * 119.99945 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00370 * 353.96053 * 13 2 1 36 36 H 1.08001 * 127.02876 * 359.97438 * 17 16 14 37 37 H 1.07994 * 125.43950 * 180.13761 * 18 17 16 38 38 H 1.09003 * 109.47653 * 29.99236 * 21 20 19 39 39 H 1.08994 * 109.47613 * 149.99737 * 21 20 19 40 40 H 0.97004 * 119.99755 * 0.02562 * 23 22 21 41 41 H 0.96994 * 119.99987 * 179.97438 * 23 22 21 42 42 H 1.08996 * 115.54932 * 268.78991 * 25 2 1 43 43 H 1.09002 * 117.49549 * 0.02562 * 26 25 2 44 44 H 1.08991 * 117.49885 * 145.02186 * 26 25 2 45 45 H 1.09005 * 117.50030 * 252.51067 * 27 26 25 46 46 H 1.09008 * 117.50382 * 107.49039 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4442 -1.4125 6 1 2.4989 3.9705 -0.6993 7 6 1.4196 4.0986 -2.5461 8 7 0.6631 3.4588 -3.4127 9 14 1.8697 5.8874 -2.8410 10 1 3.3464 6.0182 -2.9286 11 1 1.2562 6.3491 -4.1121 12 1 1.3651 6.7165 -1.7173 13 7 2.0182 -0.6906 -1.1962 14 6 3.3372 -0.7085 -1.4728 15 8 4.1308 -0.2354 -0.6820 16 6 3.8178 -1.3014 -2.7336 17 6 3.0051 -1.9187 -3.7919 18 6 3.8701 -2.3106 -4.7399 19 8 5.1171 -1.9998 -4.3528 20 6 5.1101 -1.3974 -3.1598 21 6 6.3235 -0.9071 -2.4126 22 6 6.8452 -2.0075 -1.5248 23 7 7.9328 -1.7957 -0.7574 24 8 6.2864 -3.0837 -1.5008 25 6 2.0401 -0.7213 1.2492 26 6 2.9739 -1.9157 1.0435 27 6 1.5318 -2.1422 1.5016 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 0.8900 33 1 0.9941 1.6617 -1.8348 34 1 0.3398 3.9161 -4.2046 35 1 1.3923 -1.1350 -1.7892 36 1 1.9311 -2.0314 -3.8049 37 1 3.6056 -2.8023 -5.6643 38 1 7.0964 -0.6177 -3.1247 39 1 6.0511 -0.0462 -1.8022 40 1 8.3795 -0.9348 -0.7763 41 1 8.2683 -2.5038 -0.1857 42 1 2.2164 -0.0880 2.1186 43 1 3.2252 -2.1873 0.0183 44 1 3.7649 -2.0682 1.7776 45 1 1.3740 -2.4438 2.5371 46 1 0.8339 -2.5631 0.7776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495277768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:29 Heat of formation + Delta-G solvation = -8.948986 kcal Electronic energy + Delta-G solvation = -30694.348949 eV Core-core repulsion = 26587.507158 eV Total energy + Delta-G solvation = -4106.841791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.43959 -40.06902 -39.32611 -36.98947 -34.88863 -33.76139 -33.37985 -32.75675 -31.95537 -31.07116 -29.47010 -27.40215 -25.96453 -23.85079 -23.24023 -21.95687 -21.57578 -21.26388 -20.83741 -19.48576 -18.81649 -18.02175 -17.23974 -17.20650 -16.92778 -15.89037 -15.61229 -15.58371 -15.33079 -15.12718 -14.49785 -14.35567 -13.96016 -13.67857 -13.56353 -13.21623 -13.05679 -12.84416 -12.78476 -12.71035 -12.06645 -11.99807 -11.79081 -11.64615 -11.21355 -10.96549 -10.81323 -10.73773 -10.67754 -10.15751 -10.11942 -10.01477 -9.78507 -9.76593 -9.61091 -9.55990 -9.21307 -8.72616 -8.53406 -8.37745 -6.77946 -5.68964 -2.94604 1.55579 2.26844 2.60728 2.84250 3.47819 3.48581 3.52002 3.53117 3.63389 3.89069 4.15586 4.49841 4.65458 4.87796 4.95071 4.97550 5.04204 5.14149 5.23911 5.28947 5.49272 5.52341 5.61253 5.63005 5.70248 5.80007 5.87922 5.88729 6.08286 6.09543 6.14693 6.28512 6.36768 6.41809 6.44248 6.50396 6.66405 6.67253 6.71290 6.99688 7.15365 7.19880 7.23946 7.77662 8.03543 8.17829 8.50760 8.75989 9.61862 10.21309 10.57058 11.54278 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.004673 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.320150 B = 5990.481326 C = 7136.946914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.202 3.798 3 C 0.142 3.858 4 N -0.725 5.725 5 C -0.228 4.228 6 H 0.067 0.933 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.707 5.707 14 C 0.603 3.397 15 O -0.531 6.531 16 C -0.213 4.213 17 C -0.184 4.184 18 C -0.036 4.036 19 O -0.174 6.174 20 C 0.082 3.918 21 C -0.070 4.070 22 C 0.532 3.468 23 N -0.854 5.854 24 O -0.536 6.536 25 C -0.143 4.143 26 C -0.154 4.154 27 C -0.187 4.187 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.382 0.618 34 H 0.253 0.747 35 H 0.395 0.605 36 H 0.156 0.844 37 H 0.206 0.794 38 H 0.111 0.889 39 H 0.147 0.853 40 H 0.403 0.597 41 H 0.402 0.598 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -14.067 3.089 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.116 3.884 3 C 0.014 3.986 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.085 0.915 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.357 5.357 14 C 0.391 3.609 15 O -0.410 6.410 16 C -0.217 4.217 17 C -0.204 4.204 18 C -0.102 4.102 19 O -0.070 6.070 20 C 0.029 3.971 21 C -0.110 4.110 22 C 0.316 3.684 23 N -0.418 5.418 24 O -0.412 6.412 25 C -0.163 4.163 26 C -0.191 4.191 27 C -0.224 4.224 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.216 0.784 34 H 0.063 0.937 35 H 0.228 0.772 36 H 0.174 0.826 37 H 0.223 0.777 38 H 0.129 0.871 39 H 0.164 0.836 40 H 0.231 0.769 41 H 0.232 0.768 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.949 -14.223 3.386 17.142 hybrid contribution -0.217 0.887 -0.568 1.075 sum 8.733 -13.336 2.818 16.188 Atomic orbital electron populations 1.21981 0.93233 1.01311 1.03986 1.20054 0.93607 0.92524 0.82243 1.21098 0.98894 0.87762 0.90886 1.42249 1.61234 1.10390 1.23114 1.19172 1.25113 0.87612 1.04085 0.91495 1.24663 1.00876 0.98037 0.97550 1.69639 1.39752 1.36034 1.13141 0.86302 0.77780 0.85357 0.76981 1.21481 1.21832 1.21422 1.45736 1.07092 1.56096 1.26772 1.16829 0.82465 0.77728 0.83847 1.90682 1.54911 1.46879 1.48540 1.21230 0.92956 1.09119 0.98405 1.22839 1.00469 1.03024 0.94038 1.23752 0.80340 1.04931 1.01168 1.83679 1.31644 1.60057 1.31663 1.21536 0.94894 0.96102 0.84618 1.20310 0.93744 0.99232 0.97690 1.20201 0.79671 0.88529 0.79974 1.43716 1.31698 1.19242 1.47151 1.90764 1.57486 1.26465 1.66488 1.22525 1.04276 0.90199 0.99300 1.22889 0.92083 1.01752 1.02365 1.22963 0.98202 0.99851 1.01404 0.90765 0.92929 0.91046 0.93028 0.96124 0.78404 0.93729 0.77178 0.82649 0.77710 0.87094 0.83551 0.76890 0.76769 0.87582 0.88711 0.89903 0.89534 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.19 37.16 0.30 -1.96 16 2 C 0.20 3.42 0.55 -131.82 -0.07 3.35 16 3 C 0.14 3.03 4.83 -4.04 -0.02 3.01 16 4 N -0.73 -18.40 5.17 -59.91 -0.31 -18.71 16 5 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -28.21 13.06 55.49 0.72 -27.49 16 9 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.71 -11.77 4.18 -48.68 -0.20 -11.98 16 14 C 0.60 10.99 5.07 -12.54 -0.06 10.93 16 15 O -0.53 -10.44 10.76 5.26 0.06 -10.38 16 16 C -0.21 -3.61 6.31 -103.28 -0.65 -4.27 16 17 C -0.18 -2.62 10.60 -37.46 -0.40 -3.02 16 18 C -0.04 -0.46 12.03 29.30 0.35 -0.10 16 19 O -0.17 -2.57 10.52 7.65 0.08 -2.49 16 20 C 0.08 1.30 5.87 -34.97 -0.21 1.09 16 21 C -0.07 -0.91 5.71 -29.04 -0.17 -1.08 16 22 C 0.53 7.05 8.09 -10.98 -0.09 6.96 16 23 N -0.85 -7.34 8.87 31.22 0.28 -7.06 16 24 O -0.54 -9.37 16.87 5.55 0.09 -9.27 16 25 C -0.14 -2.21 4.82 -90.62 -0.44 -2.64 16 26 C -0.15 -2.38 8.30 -26.73 -0.22 -2.60 16 27 C -0.19 -2.47 9.68 -26.73 -0.26 -2.73 16 28 H 0.07 1.30 6.86 -51.93 -0.36 0.94 16 29 H 0.05 0.67 6.96 -51.92 -0.36 0.31 16 30 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.05 1.21 5.92 -51.93 -0.31 0.91 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.38 10.00 6.35 -40.82 -0.26 9.74 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.39 5.84 7.67 -40.82 -0.31 5.53 16 36 H 0.16 1.83 7.75 -52.49 -0.41 1.43 16 37 H 0.21 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.15 2.03 6.48 -51.93 -0.34 1.70 16 40 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 41 H 0.40 2.99 8.93 -40.82 -0.36 2.62 16 42 H 0.11 1.62 8.07 -51.93 -0.42 1.20 16 43 H 0.09 1.64 5.09 -51.93 -0.26 1.38 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.12 7.26 -51.92 -0.38 0.74 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -36.80 376.94 -7.00 -43.81 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -6.21 Total: 20.42 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.17 Total: -0.26 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: 0.49 Total: -65.24 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.23 Total: -22.15 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.80 -7.00 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495277768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.858 kcal (2) G-P(sol) polarization free energy of solvation -36.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds