Wall clock time and date at job start Tue Mar 31 2020 18:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 N 1.46499 * 109.47180 * 300.00712 * 3 2 1 5 5 C 1.36929 * 120.00234 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00342 * 359.72414 * 5 4 3 7 7 C 1.38817 * 120.00351 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99816 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46955 * 60.00609 * 9 7 5 11 11 H 1.48501 * 109.47283 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47328 * 300.00516 * 9 7 5 13 13 N 1.46502 * 109.46796 * 240.00248 * 2 1 3 14 14 C 1.34776 * 119.99900 * 173.96311 * 13 2 1 15 15 O 1.21616 * 120.00155 * 5.26991 * 14 13 2 16 16 C 1.47384 * 120.00181 * 185.26912 * 14 13 2 17 17 C 1.47014 * 127.18834 * 359.68645 * 16 14 13 18 18 C 1.34183 * 105.95239 * 179.82585 * 17 16 14 19 19 O 1.34216 * 109.12066 * 0.44213 * 18 17 16 20 20 C 1.33650 * 110.91275 * 359.70303 * 19 18 17 21 21 C 1.50692 * 125.80541 * 180.02562 * 20 19 18 22 22 C 1.50707 * 109.46877 * 269.99841 * 21 20 19 23 23 N 1.34777 * 120.00177 * 179.97438 * 22 21 20 24 24 O 1.21284 * 120.00005 * 359.97438 * 22 21 20 25 25 C 1.53000 * 109.47595 * 120.00248 * 2 1 3 26 26 C 1.52999 * 117.50230 * 123.07631 * 25 2 1 27 27 C 1.52996 * 60.00182 * 252.51426 * 26 25 2 28 28 H 1.08999 * 109.47521 * 60.00062 * 1 2 3 29 29 H 1.09010 * 109.47343 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47047 * 299.99660 * 1 2 3 31 31 H 1.08999 * 109.47678 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46664 * 59.99686 * 3 2 1 33 33 H 0.97007 * 119.99981 * 359.97438 * 4 3 2 34 34 H 0.96995 * 119.99945 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00370 * 353.96053 * 13 2 1 36 36 H 1.08001 * 127.02876 * 359.97438 * 17 16 14 37 37 H 1.07994 * 125.43950 * 180.13761 * 18 17 16 38 38 H 1.09003 * 109.47653 * 29.99236 * 21 20 19 39 39 H 1.08994 * 109.47613 * 149.99737 * 21 20 19 40 40 H 0.97004 * 119.99755 * 0.02562 * 23 22 21 41 41 H 0.96994 * 119.99987 * 179.97438 * 23 22 21 42 42 H 1.08996 * 115.54932 * 268.78991 * 25 2 1 43 43 H 1.09002 * 117.49549 * 0.02562 * 26 25 2 44 44 H 1.08991 * 117.49885 * 145.02186 * 26 25 2 45 45 H 1.09005 * 117.50030 * 252.51067 * 27 26 25 46 46 H 1.09008 * 117.50382 * 107.49039 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4442 -1.4125 6 1 2.4989 3.9705 -0.6993 7 6 1.4196 4.0986 -2.5461 8 7 0.6631 3.4588 -3.4127 9 14 1.8697 5.8874 -2.8410 10 1 3.3464 6.0182 -2.9286 11 1 1.2562 6.3491 -4.1121 12 1 1.3651 6.7165 -1.7173 13 7 2.0182 -0.6906 -1.1962 14 6 3.3372 -0.7085 -1.4728 15 8 4.1308 -0.2354 -0.6820 16 6 3.8178 -1.3014 -2.7336 17 6 3.0051 -1.9187 -3.7919 18 6 3.8701 -2.3106 -4.7399 19 8 5.1171 -1.9998 -4.3528 20 6 5.1101 -1.3974 -3.1598 21 6 6.3235 -0.9071 -2.4126 22 6 6.8452 -2.0075 -1.5248 23 7 7.9328 -1.7957 -0.7574 24 8 6.2864 -3.0837 -1.5008 25 6 2.0401 -0.7213 1.2492 26 6 2.9739 -1.9157 1.0435 27 6 1.5318 -2.1422 1.5016 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 0.8900 33 1 0.9941 1.6617 -1.8348 34 1 0.3398 3.9161 -4.2046 35 1 1.3923 -1.1350 -1.7892 36 1 1.9311 -2.0314 -3.8049 37 1 3.6056 -2.8023 -5.6643 38 1 7.0964 -0.6177 -3.1247 39 1 6.0511 -0.0462 -1.8022 40 1 8.3795 -0.9348 -0.7763 41 1 8.2683 -2.5038 -0.1857 42 1 2.2164 -0.0880 2.1186 43 1 3.2252 -2.1873 0.0183 44 1 3.7649 -2.0682 1.7776 45 1 1.3740 -2.4438 2.5371 46 1 0.8339 -2.5631 0.7776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495277768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:28 Heat of formation + Delta-G solvation = -37.577971 kcal Electronic energy + Delta-G solvation = -30695.590395 eV Core-core repulsion = 26587.507158 eV Total energy + Delta-G solvation = -4108.083237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.54548 -41.41787 -40.38174 -38.32775 -36.57041 -34.95401 -34.72919 -34.03961 -33.15685 -32.66918 -31.10461 -28.47378 -27.63556 -25.60548 -24.60618 -23.11137 -22.92531 -22.55457 -21.95175 -20.66860 -20.21945 -19.22780 -19.06729 -18.24503 -17.93519 -17.21811 -16.90937 -16.76076 -16.73173 -16.30694 -16.18973 -15.66489 -15.33288 -15.12232 -14.94961 -14.70738 -14.54927 -14.25796 -13.94452 -13.78060 -13.52484 -13.47223 -13.22051 -12.96900 -12.75262 -12.70231 -12.38811 -12.26746 -12.13801 -12.00425 -11.73892 -11.27162 -11.23153 -11.06822 -10.94021 -10.70856 -10.68084 -10.44092 -9.88594 -9.53621 -8.88846 -7.90914 -5.16610 0.36568 1.19430 1.46319 1.48926 1.54950 1.57938 1.79620 2.28746 2.48372 2.57791 2.73286 2.97300 3.42265 3.48328 3.67594 3.81815 3.91449 4.00612 4.02520 4.04585 4.18338 4.19184 4.37371 4.38771 4.43979 4.56794 4.62859 4.75247 4.80130 4.93100 4.93871 4.96758 5.02616 5.09281 5.23032 5.29943 5.33174 5.36310 5.40694 5.50642 5.76792 5.86988 6.03982 6.31210 6.39164 6.71664 7.29549 7.38421 7.41695 8.14290 8.42091 9.32010 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.004673 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.320150 B = 5990.481326 C = 7136.946914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.209 3.791 3 C 0.144 3.856 4 N -0.729 5.729 5 C -0.240 4.240 6 H 0.064 0.936 7 C -0.069 4.069 8 N -0.964 5.964 9 Si 0.967 3.033 10 H -0.283 1.283 11 H -0.293 1.293 12 H -0.279 1.279 13 N -0.702 5.702 14 C 0.596 3.404 15 O -0.555 6.555 16 C -0.249 4.249 17 C -0.204 4.204 18 C -0.026 4.026 19 O -0.179 6.179 20 C 0.069 3.931 21 C -0.071 4.071 22 C 0.531 3.469 23 N -0.830 5.830 24 O -0.584 6.584 25 C -0.154 4.154 26 C -0.164 4.164 27 C -0.155 4.155 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.403 0.597 36 H 0.174 0.826 37 H 0.252 0.748 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.419 0.581 41 H 0.410 0.590 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 -14.689 3.148 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.123 3.877 3 C 0.016 3.984 4 N -0.372 5.372 5 C -0.373 4.373 6 H 0.082 0.918 7 C -0.262 4.262 8 N -0.615 5.615 9 Si 0.797 3.203 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.205 1.205 13 N -0.352 5.352 14 C 0.385 3.615 15 O -0.436 6.436 16 C -0.254 4.254 17 C -0.223 4.223 18 C -0.091 4.091 19 O -0.075 6.075 20 C 0.015 3.985 21 C -0.110 4.110 22 C 0.316 3.684 23 N -0.395 5.395 24 O -0.464 6.464 25 C -0.173 4.173 26 C -0.202 4.202 27 C -0.192 4.192 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.238 0.762 36 H 0.191 0.809 37 H 0.268 0.732 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.251 0.749 41 H 0.242 0.758 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.128 0.872 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.058 -14.830 3.485 17.724 hybrid contribution -0.167 1.071 -0.562 1.221 sum 8.891 -13.759 2.923 16.641 Atomic orbital electron populations 1.21915 0.91717 1.03057 1.02999 1.19905 0.94556 0.89984 0.83301 1.21125 0.97494 0.90572 0.89194 1.42315 1.61042 1.09727 1.24112 1.19492 1.24693 0.88991 1.04077 0.91782 1.25402 1.01291 1.01981 0.97496 1.69784 1.40847 1.37418 1.13432 0.85309 0.77518 0.80743 0.76778 1.20982 1.21900 1.20543 1.45680 1.06928 1.55788 1.26851 1.17125 0.82693 0.77437 0.84199 1.90647 1.55494 1.48011 1.49403 1.21454 0.94371 1.10687 0.98868 1.23149 1.01648 1.03669 0.93854 1.24658 0.79183 1.03306 1.01954 1.83695 1.32742 1.59859 1.31191 1.21995 0.95533 0.95903 0.85048 1.20375 0.93970 0.98510 0.98150 1.20265 0.80178 0.87789 0.80206 1.43516 1.30088 1.20320 1.45562 1.90736 1.59281 1.28217 1.68211 1.22425 1.05423 0.91075 0.98424 1.22772 0.93584 1.02468 1.01358 1.23060 0.96242 0.96924 1.02936 0.93175 0.89773 0.90526 0.95288 0.96272 0.79039 0.94136 0.76206 0.80865 0.73235 0.83655 0.84836 0.74908 0.75765 0.87600 0.90715 0.90075 0.87183 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.19 71.98 0.59 -3.55 16 2 C 0.21 7.06 0.55 3.60 0.00 7.06 16 3 C 0.14 6.28 4.83 86.38 0.42 6.69 16 4 N -0.73 -37.75 5.17 -343.46 -1.78 -39.53 16 5 C -0.24 -13.86 9.99 84.04 0.84 -13.02 16 6 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 8 N -0.96 -58.64 13.06 21.65 0.28 -58.36 16 9 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.70 -23.63 4.18 -426.18 -1.78 -25.42 16 14 C 0.60 22.38 5.07 86.65 0.44 22.82 16 15 O -0.55 -22.69 10.76 -4.08 -0.04 -22.74 16 16 C -0.25 -8.65 6.31 -18.99 -0.12 -8.77 16 17 C -0.20 -5.72 10.60 23.65 0.25 -5.47 16 18 C -0.03 -0.62 12.03 66.89 0.80 0.19 16 19 O -0.18 -5.15 10.52 4.47 0.05 -5.11 16 20 C 0.07 2.20 5.87 25.26 0.15 2.35 16 21 C -0.07 -1.85 5.71 29.10 0.17 -1.68 16 22 C 0.53 14.10 8.09 87.66 0.71 14.81 16 23 N -0.83 -13.56 8.87 -173.52 -1.54 -15.10 16 24 O -0.58 -20.84 16.87 -3.04 -0.05 -20.89 16 25 C -0.15 -4.61 4.82 -10.79 -0.05 -4.66 16 26 C -0.16 -5.02 8.30 30.59 0.25 -4.77 16 27 C -0.15 -3.70 9.68 30.59 0.30 -3.41 16 28 H 0.05 1.74 6.86 -2.39 -0.02 1.73 16 29 H 0.08 1.95 6.96 -2.38 -0.02 1.93 16 30 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.03 1.42 5.92 -2.39 -0.01 1.41 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.38 20.16 6.35 -92.70 -0.59 19.57 16 34 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.40 11.92 7.67 -92.71 -0.71 11.21 16 36 H 0.17 3.96 7.75 -2.91 -0.02 3.94 16 37 H 0.25 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.15 2.59 8.14 -2.39 -0.02 2.58 16 39 H 0.13 3.85 6.48 -2.39 -0.02 3.83 16 40 H 0.42 4.09 8.83 -92.71 -0.82 3.27 16 41 H 0.41 5.70 8.93 -92.71 -0.83 4.87 16 42 H 0.11 3.16 8.07 -2.39 -0.02 3.14 16 43 H 0.07 2.63 5.09 -2.39 -0.01 2.62 16 44 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.10 2.20 7.26 -2.38 -0.02 2.18 16 Total: -1.00 -81.43 376.94 0.50 -80.93 By element: Atomic # 1 Polarization: 54.07 SS G_CDS: -1.87 Total: 52.19 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.21 Total: 5.03 kcal Atomic # 7 Polarization: -133.59 SS G_CDS: -4.82 Total: -138.41 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.05 Total: -48.74 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -81.43 0.50 -80.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495277768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.353 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds