Wall clock time and date at job start Tue Mar 31 2020 18:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46639 * 2 1 4 4 N 1.46498 * 109.46888 * 180.02562 * 3 2 1 5 5 C 1.34784 * 120.00000 * 83.26190 * 4 3 2 6 6 O 1.21609 * 119.99664 * 184.17986 * 5 4 3 7 7 C 1.47289 * 120.00024 * 4.18141 * 5 4 3 8 8 C 1.36571 * 125.80602 * 173.40046 * 7 5 4 9 9 C 1.40060 * 106.92511 * 180.02562 * 8 7 5 10 10 C 1.36564 * 106.92606 * 359.97438 * 9 8 7 11 11 C 1.47302 * 125.80426 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99964 * 180.02562 * 11 10 9 13 13 O 1.21605 * 119.99570 * 359.72170 * 11 10 9 14 14 O 1.34549 * 108.39409 * 0.26064 * 10 9 8 15 15 C 1.46500 * 120.00224 * 263.26134 * 4 3 2 16 16 H 1.08999 * 110.64008 * 359.29770 * 15 4 3 17 17 C 1.55153 * 110.72136 * 122.43720 * 15 4 3 18 18 C 1.55125 * 101.48431 * 153.73679 * 17 15 4 19 19 N 1.47423 * 104.94384 * 323.22489 * 18 17 15 20 20 C 1.36938 * 125.65001 * 203.96861 * 19 18 17 21 21 H 1.08005 * 120.00199 * 180.02562 * 20 19 18 22 22 C 1.38817 * 119.99843 * 0.03856 * 20 19 18 23 23 N 1.31614 * 119.99855 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99806 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46893 * 90.00331 * 24 22 20 26 26 H 1.48504 * 109.47276 * 210.00097 * 24 22 20 27 27 H 1.48499 * 109.47416 * 330.00202 * 24 22 20 28 28 C 1.47017 * 108.70484 * 24.00180 * 19 18 17 29 29 H 1.08995 * 109.47396 * 60.00002 * 1 2 3 30 30 H 1.08999 * 109.46671 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47154 * 300.00281 * 1 2 3 32 32 H 1.08995 * 109.46850 * 240.00426 * 2 1 3 33 33 H 1.08995 * 109.46962 * 119.99358 * 2 1 3 34 34 H 1.08998 * 109.47577 * 59.99978 * 3 2 1 35 35 H 1.09007 * 109.47163 * 299.99682 * 3 2 1 36 36 H 1.07997 * 126.53205 * 0.07616 * 8 7 5 37 37 H 1.07998 * 126.53301 * 179.97438 * 9 8 7 38 38 H 0.96998 * 119.99925 * 179.72290 * 12 11 10 39 39 H 0.96997 * 119.99796 * 359.72161 * 12 11 10 40 40 H 1.09001 * 111.00863 * 271.94349 * 17 15 4 41 41 H 1.09001 * 111.00214 * 35.79661 * 17 15 4 42 42 H 1.08997 * 110.41858 * 204.29582 * 18 17 15 43 43 H 1.08997 * 110.29747 * 82.09528 * 18 17 15 44 44 H 0.97004 * 119.99924 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.88658 * 239.52841 * 28 19 18 46 46 H 1.08994 * 109.88578 * 118.35460 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1784 1.3059 -1.1601 6 8 5.3920 1.2295 -1.1530 7 6 3.4443 1.2489 -2.4358 8 6 4.0055 1.2403 -3.6809 9 6 2.9524 1.1806 -4.6024 10 6 1.7935 1.1547 -3.8805 11 6 0.4318 1.0914 -4.4388 12 7 -0.6343 1.0719 -3.6144 13 8 0.2694 1.0624 -5.6436 14 8 2.1066 1.2020 -2.5728 15 6 4.2380 1.5913 1.2590 16 1 3.5472 1.7025 2.0948 17 6 5.1867 0.3852 1.4878 18 6 6.2811 1.0190 2.3861 19 7 6.4451 2.3918 1.8742 20 6 7.5647 3.1675 2.0147 21 1 7.5857 4.1654 1.6019 22 6 8.6730 2.6712 2.6873 23 7 8.6478 1.4550 3.1896 24 14 10.2001 3.7297 2.8795 25 1 10.1014 4.5177 4.1343 26 1 11.4020 2.8593 2.9349 27 1 10.3110 4.6536 1.7222 28 6 5.2071 2.7903 1.1886 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8901 36 1 5.0602 1.2725 -3.9109 37 1 3.0403 1.1591 -5.6785 38 1 -1.5311 1.0343 -3.9821 39 1 -0.5047 1.0954 -2.6534 40 1 4.6721 -0.4240 2.0060 41 1 5.6098 0.0368 0.5456 42 1 7.2157 0.4658 2.2945 43 1 5.9528 1.0383 3.4253 44 1 9.4221 1.1083 3.6600 45 1 5.4213 3.0330 0.1478 46 1 4.7670 3.6525 1.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664673726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:32 Heat of formation + Delta-G solvation = -15.098665 kcal Electronic energy + Delta-G solvation = -30121.413338 eV Core-core repulsion = 26014.304877 eV Total energy + Delta-G solvation = -4107.108461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.10688 -40.08618 -39.50753 -36.92156 -36.10685 -34.33249 -33.32108 -33.12374 -31.90332 -30.44072 -29.08589 -27.46860 -26.32271 -25.04925 -24.07658 -22.57592 -21.95889 -21.16614 -20.81855 -20.13721 -19.50598 -18.56544 -17.46278 -17.26391 -16.95863 -16.77578 -15.85100 -15.38075 -15.01195 -14.99421 -14.62103 -14.50752 -14.46374 -13.94572 -13.56435 -13.45437 -13.39838 -13.30969 -13.04652 -12.60450 -12.28911 -12.11416 -11.75272 -11.61225 -11.50065 -11.02572 -10.99418 -10.96523 -10.83682 -10.77780 -10.58328 -10.33716 -10.27433 -10.06383 -9.84758 -9.59768 -9.40365 -9.03235 -8.58382 -8.45248 -6.74521 -5.57684 -2.98321 0.41511 1.71665 2.09767 2.76192 2.85499 3.10325 3.14468 3.45020 3.49933 3.52357 4.15986 4.52585 4.56790 4.59010 4.68816 4.77059 5.03632 5.11336 5.22021 5.24886 5.35144 5.40426 5.48028 5.52691 5.58163 5.61390 5.72159 5.74860 5.77443 5.87634 5.96787 6.05851 6.15120 6.20932 6.36027 6.50223 6.54834 6.61300 6.72763 6.82022 7.09331 7.38022 7.58375 7.63584 7.69973 7.92781 8.13311 8.44227 9.29383 9.90350 10.54702 11.46371 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.003006 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.857549 B = 9314.014408 C =10224.580420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.103 3.897 4 N -0.593 5.593 5 C 0.587 3.413 6 O -0.475 6.475 7 C -0.022 4.022 8 C -0.143 4.143 9 C -0.121 4.121 10 C -0.074 4.074 11 C 0.612 3.388 12 N -0.843 5.843 13 O -0.519 6.519 14 O -0.146 6.146 15 C 0.134 3.866 16 H 0.094 0.906 17 C -0.156 4.156 18 C 0.158 3.842 19 N -0.595 5.595 20 C -0.216 4.216 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.132 3.868 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.410 0.590 39 H 0.405 0.595 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.035 0.965 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.519 -3.294 -9.942 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C -0.020 4.020 4 N -0.325 5.325 5 C 0.372 3.628 6 O -0.349 6.349 7 C -0.076 4.076 8 C -0.163 4.163 9 C -0.141 4.141 10 C -0.128 4.128 11 C 0.397 3.603 12 N -0.408 5.408 13 O -0.396 6.396 14 O -0.043 6.043 15 C 0.032 3.968 16 H 0.112 0.888 17 C -0.196 4.196 18 C 0.033 3.967 19 N -0.321 5.321 20 C -0.344 4.344 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.005 3.995 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.242 0.758 39 H 0.236 0.764 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.126 0.874 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -20.776 -3.334 -10.364 23.456 hybrid contribution 0.381 0.553 0.363 0.764 sum -20.395 -2.781 -10.001 22.885 Atomic orbital electron populations 1.21685 0.95233 1.01936 1.01344 1.21981 0.95963 0.97054 1.03055 1.21909 0.79364 0.97325 1.03439 1.47924 1.06526 1.71280 1.06746 1.16822 0.86361 0.78656 0.80925 1.91014 1.11369 1.47665 1.84823 1.22878 0.79820 1.07835 0.97076 1.22017 1.01664 1.02546 0.90083 1.21972 0.89969 1.00623 1.01569 1.22272 0.95683 1.12831 0.81993 1.16629 0.82033 0.75912 0.85764 1.43798 1.09010 1.77035 1.10967 1.90919 1.84796 1.50336 1.13583 1.84322 1.24006 1.70400 1.25530 1.22341 0.93433 0.98387 0.82642 0.88845 1.23499 0.97922 0.95705 1.02455 1.21892 0.97294 0.85650 0.91903 1.44282 1.10566 1.13381 1.63919 1.19051 0.90135 0.95969 1.29244 0.90639 1.24760 0.98286 0.96975 1.00726 1.69787 1.29574 1.15505 1.42363 0.86070 0.82670 0.79038 0.77725 1.21752 1.21693 1.20742 1.21483 0.87760 0.93301 0.96929 0.93455 0.92270 0.92220 0.91750 0.91109 0.89646 0.89791 0.81261 0.81585 0.75808 0.76426 0.92671 0.89988 0.87447 0.97170 0.93831 0.94709 0.96298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.14 -1.21 5.76 -26.73 -0.15 -1.36 16 3 C 0.10 1.00 5.00 -4.04 -0.02 0.98 16 4 N -0.59 -8.46 2.55 -165.33 -0.42 -8.88 16 5 C 0.59 9.45 6.68 -12.58 -0.08 9.37 16 6 O -0.47 -9.74 13.25 5.27 0.07 -9.67 16 7 C -0.02 -0.29 6.57 -36.51 -0.24 -0.53 16 8 C -0.14 -1.73 10.60 -39.50 -0.42 -2.15 16 9 C -0.12 -1.29 10.60 -39.50 -0.42 -1.71 16 10 C -0.07 -0.78 7.14 -36.50 -0.26 -1.04 16 11 C 0.61 5.93 8.08 -12.57 -0.10 5.83 16 12 N -0.84 -4.75 8.87 30.40 0.27 -4.48 16 13 O -0.52 -6.66 17.70 5.27 0.09 -6.56 16 14 O -0.15 -1.52 5.86 4.34 0.03 -1.49 16 15 C 0.13 2.31 3.43 -66.10 -0.23 2.09 16 16 H 0.09 1.40 7.78 -51.93 -0.40 1.00 16 17 C -0.16 -3.08 6.43 -24.47 -0.16 -3.24 16 18 C 0.16 3.92 5.89 -2.41 -0.01 3.91 16 19 N -0.60 -15.76 3.40 -169.94 -0.58 -16.34 16 20 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 23 N -0.92 -27.51 10.09 55.49 0.56 -26.95 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.13 2.87 6.49 -3.06 -0.02 2.85 16 29 H 0.05 0.19 6.11 -51.93 -0.32 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.63 7.08 -51.93 -0.37 0.26 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.72 7.81 -51.93 -0.41 0.31 16 35 H 0.08 0.75 5.39 -51.92 -0.28 0.47 16 36 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 39 H 0.41 1.67 6.56 -40.82 -0.27 1.40 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.77 5.89 -51.93 -0.31 1.47 16 42 H 0.11 3.05 5.87 -51.93 -0.30 2.75 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.04 0.81 6.20 -51.93 -0.32 0.49 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -34.95 369.67 -7.70 -42.65 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.27 Total: 0.77 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.00 Total: 7.73 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.17 Total: -56.64 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.19 Total: -17.72 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.95 -7.70 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.547 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds