Wall clock time and date at job start Tue Mar 31 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46639 * 2 1 4 4 N 1.46498 * 109.46888 * 180.02562 * 3 2 1 5 5 C 1.34784 * 120.00000 * 83.26190 * 4 3 2 6 6 O 1.21609 * 119.99664 * 184.17986 * 5 4 3 7 7 C 1.47289 * 120.00024 * 4.18141 * 5 4 3 8 8 C 1.36571 * 125.80602 * 173.40046 * 7 5 4 9 9 C 1.40060 * 106.92511 * 180.02562 * 8 7 5 10 10 C 1.36564 * 106.92606 * 359.97438 * 9 8 7 11 11 C 1.47302 * 125.80426 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99964 * 180.02562 * 11 10 9 13 13 O 1.21605 * 119.99570 * 359.72170 * 11 10 9 14 14 O 1.34549 * 108.39409 * 0.26064 * 10 9 8 15 15 C 1.46500 * 120.00224 * 263.26134 * 4 3 2 16 16 H 1.08999 * 110.64008 * 359.29770 * 15 4 3 17 17 C 1.55153 * 110.72136 * 122.43720 * 15 4 3 18 18 C 1.55125 * 101.48431 * 153.73679 * 17 15 4 19 19 N 1.47423 * 104.94384 * 323.22489 * 18 17 15 20 20 C 1.36938 * 125.65001 * 203.96861 * 19 18 17 21 21 H 1.08005 * 120.00199 * 180.02562 * 20 19 18 22 22 C 1.38817 * 119.99843 * 0.03856 * 20 19 18 23 23 N 1.31614 * 119.99855 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99806 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46893 * 90.00331 * 24 22 20 26 26 H 1.48504 * 109.47276 * 210.00097 * 24 22 20 27 27 H 1.48499 * 109.47416 * 330.00202 * 24 22 20 28 28 C 1.47017 * 108.70484 * 24.00180 * 19 18 17 29 29 H 1.08995 * 109.47396 * 60.00002 * 1 2 3 30 30 H 1.08999 * 109.46671 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47154 * 300.00281 * 1 2 3 32 32 H 1.08995 * 109.46850 * 240.00426 * 2 1 3 33 33 H 1.08995 * 109.46962 * 119.99358 * 2 1 3 34 34 H 1.08998 * 109.47577 * 59.99978 * 3 2 1 35 35 H 1.09007 * 109.47163 * 299.99682 * 3 2 1 36 36 H 1.07997 * 126.53205 * 0.07616 * 8 7 5 37 37 H 1.07998 * 126.53301 * 179.97438 * 9 8 7 38 38 H 0.96998 * 119.99925 * 179.72290 * 12 11 10 39 39 H 0.96997 * 119.99796 * 359.72161 * 12 11 10 40 40 H 1.09001 * 111.00863 * 271.94349 * 17 15 4 41 41 H 1.09001 * 111.00214 * 35.79661 * 17 15 4 42 42 H 1.08997 * 110.41858 * 204.29582 * 18 17 15 43 43 H 1.08997 * 110.29747 * 82.09528 * 18 17 15 44 44 H 0.97004 * 119.99924 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.88658 * 239.52841 * 28 19 18 46 46 H 1.08994 * 109.88578 * 118.35460 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1784 1.3059 -1.1601 6 8 5.3920 1.2295 -1.1530 7 6 3.4443 1.2489 -2.4358 8 6 4.0055 1.2403 -3.6809 9 6 2.9524 1.1806 -4.6024 10 6 1.7935 1.1547 -3.8805 11 6 0.4318 1.0914 -4.4388 12 7 -0.6343 1.0719 -3.6144 13 8 0.2694 1.0624 -5.6436 14 8 2.1066 1.2020 -2.5728 15 6 4.2380 1.5913 1.2590 16 1 3.5472 1.7025 2.0948 17 6 5.1867 0.3852 1.4878 18 6 6.2811 1.0190 2.3861 19 7 6.4451 2.3918 1.8742 20 6 7.5647 3.1675 2.0147 21 1 7.5857 4.1654 1.6019 22 6 8.6730 2.6712 2.6873 23 7 8.6478 1.4550 3.1896 24 14 10.2001 3.7297 2.8795 25 1 10.1014 4.5177 4.1343 26 1 11.4020 2.8593 2.9349 27 1 10.3110 4.6536 1.7222 28 6 5.2071 2.7903 1.1886 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8901 36 1 5.0602 1.2725 -3.9109 37 1 3.0403 1.1591 -5.6785 38 1 -1.5311 1.0343 -3.9821 39 1 -0.5047 1.0954 -2.6534 40 1 4.6721 -0.4240 2.0060 41 1 5.6098 0.0368 0.5456 42 1 7.2157 0.4658 2.2945 43 1 5.9528 1.0383 3.4253 44 1 9.4221 1.1083 3.6600 45 1 5.4213 3.0330 0.1478 46 1 4.7670 3.6525 1.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664673726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:31 Heat of formation + Delta-G solvation = -40.441279 kcal Electronic energy + Delta-G solvation = -30122.512276 eV Core-core repulsion = 26014.304877 eV Total energy + Delta-G solvation = -4108.207400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.01944 -41.34191 -40.33863 -38.52767 -37.29426 -35.05029 -34.62131 -34.17065 -33.32131 -31.62188 -30.82114 -29.04653 -27.17190 -26.74249 -25.35967 -23.61155 -22.74956 -22.28624 -21.99054 -21.77005 -20.68591 -19.36765 -18.97544 -18.46173 -17.99042 -17.73340 -17.20025 -16.77349 -16.44167 -16.01663 -15.77492 -15.65953 -15.43858 -15.42397 -14.98161 -14.46465 -14.31084 -14.23620 -14.14655 -14.04547 -13.73996 -13.42171 -13.06824 -12.98564 -12.74455 -12.71810 -12.50916 -12.30469 -12.02780 -12.02312 -11.83950 -11.78532 -11.67765 -11.39729 -11.19967 -10.92356 -10.91414 -10.72869 -10.02323 -9.67212 -8.85551 -7.75939 -5.19470 -0.52163 0.76833 1.11486 1.44757 1.47771 1.56206 1.79648 1.95869 1.99235 2.36031 2.50851 3.24348 3.34005 3.68141 3.73306 3.78283 3.86503 3.94007 4.05607 4.16797 4.23953 4.32160 4.36063 4.41499 4.54627 4.67891 4.69345 4.75037 4.77988 4.92771 4.97212 4.99930 5.05260 5.08739 5.23445 5.29899 5.39001 5.44963 5.48983 5.60976 5.70568 5.71624 5.81320 6.18310 6.26923 6.32562 6.93187 7.03053 7.12010 7.79541 8.42843 9.25799 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.003006 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.857549 B = 9314.014408 C =10224.580420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.096 3.904 4 N -0.586 5.586 5 C 0.585 3.415 6 O -0.532 6.532 7 C -0.039 4.039 8 C -0.141 4.141 9 C -0.127 4.127 10 C -0.062 4.062 11 C 0.614 3.386 12 N -0.817 5.817 13 O -0.552 6.552 14 O -0.129 6.129 15 C 0.153 3.847 16 H 0.129 0.871 17 C -0.141 4.141 18 C 0.161 3.839 19 N -0.618 5.618 20 C -0.236 4.236 21 H 0.075 0.925 22 C -0.068 4.068 23 N -0.948 5.948 24 Si 0.981 3.019 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.274 1.274 28 C 0.129 3.871 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.423 0.577 39 H 0.416 0.584 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.066 0.934 43 H -0.002 1.002 44 H 0.247 0.753 45 H 0.016 0.984 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.759 -2.873 -10.243 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C -0.025 4.025 4 N -0.317 5.317 5 C 0.373 3.627 6 O -0.410 6.410 7 C -0.093 4.093 8 C -0.161 4.161 9 C -0.148 4.148 10 C -0.116 4.116 11 C 0.398 3.602 12 N -0.383 5.383 13 O -0.431 6.431 14 O -0.025 6.025 15 C 0.049 3.951 16 H 0.147 0.853 17 C -0.180 4.180 18 C 0.036 3.964 19 N -0.344 5.344 20 C -0.365 4.365 21 H 0.093 0.907 22 C -0.260 4.260 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.199 1.199 28 C 0.003 3.997 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.184 0.816 37 H 0.199 0.801 38 H 0.258 0.742 39 H 0.248 0.752 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.016 0.984 44 H 0.056 0.944 45 H 0.034 0.966 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -24.123 -2.906 -10.641 26.526 hybrid contribution 1.290 0.421 0.403 1.416 sum -22.833 -2.485 -10.238 25.146 Atomic orbital electron populations 1.21678 0.92640 1.02746 1.02784 1.21937 0.98122 0.95621 1.01999 1.22287 0.76206 0.98783 1.05191 1.47941 1.08322 1.70250 1.05164 1.17135 0.85931 0.77561 0.82099 1.90988 1.13856 1.50351 1.85854 1.22248 0.80786 1.10396 0.95873 1.22144 1.02079 1.01610 0.90316 1.22148 0.89564 1.00803 1.02237 1.22559 0.96301 1.11034 0.81744 1.16520 0.82211 0.75978 0.85493 1.43624 1.08728 1.74730 1.11201 1.90919 1.85029 1.52214 1.14983 1.84293 1.22515 1.70168 1.25558 1.22083 0.93179 0.94689 0.85107 0.85311 1.23249 0.97079 0.97254 1.00443 1.21642 0.97192 0.85224 0.92389 1.44567 1.11643 1.13922 1.64284 1.19394 0.91540 0.96402 1.29193 0.90748 1.25622 1.01191 0.98346 1.00847 1.70056 1.29985 1.16894 1.42881 0.85044 0.78656 0.77446 0.77973 1.20842 1.21910 1.19898 1.21625 0.87201 0.95668 0.95240 0.91733 0.91838 0.91112 0.93184 0.91954 0.87273 0.88617 0.81564 0.80124 0.74240 0.75161 0.89500 0.92210 0.91605 0.98359 0.94357 0.96597 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.91 71.98 0.71 -0.28 16 2 C -0.14 -1.93 5.76 30.60 0.18 -1.76 16 3 C 0.10 1.57 5.00 86.38 0.43 2.00 16 4 N -0.59 -15.90 2.55 -795.24 -2.03 -17.93 16 5 C 0.59 18.90 6.68 86.62 0.58 19.48 16 6 O -0.53 -22.81 13.25 -4.06 -0.05 -22.87 16 7 C -0.04 -0.99 6.57 24.26 0.16 -0.83 16 8 C -0.14 -3.39 10.60 22.32 0.24 -3.15 16 9 C -0.13 -2.55 10.60 22.32 0.24 -2.32 16 10 C -0.06 -1.16 7.14 24.26 0.17 -0.99 16 11 C 0.61 10.19 8.08 86.63 0.70 10.89 16 12 N -0.82 -6.16 8.87 -175.98 -1.56 -7.72 16 13 O -0.55 -12.99 17.70 -4.05 -0.07 -13.06 16 14 O -0.13 -2.40 5.86 -7.37 -0.04 -2.44 16 15 C 0.15 5.08 3.43 46.18 0.16 5.24 16 16 H 0.13 3.43 7.78 -2.39 -0.02 3.41 16 17 C -0.14 -5.58 6.43 32.06 0.21 -5.37 16 18 C 0.16 8.28 5.89 86.93 0.51 8.79 16 19 N -0.62 -33.70 3.40 -691.57 -2.35 -36.05 16 20 C -0.24 -14.03 10.27 84.03 0.86 -13.17 16 21 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 23 N -0.95 -58.60 10.09 21.65 0.22 -58.38 16 24 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 27 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 28 C 0.13 5.63 6.49 86.73 0.56 6.20 16 29 H 0.06 0.22 6.11 -2.39 -0.01 0.20 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.86 7.08 -2.39 -0.02 0.84 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.34 7.81 -2.39 -0.02 1.32 16 35 H 0.10 1.38 5.39 -2.38 -0.01 1.36 16 36 H 0.17 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.42 1.55 8.93 -92.71 -0.83 0.72 16 39 H 0.42 1.58 6.56 -92.71 -0.61 0.97 16 40 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.06 2.67 5.89 -2.39 -0.01 2.66 16 42 H 0.07 3.95 5.87 -2.39 -0.01 3.93 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.02 0.76 6.20 -2.39 -0.01 0.75 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -80.51 369.67 1.91 -78.60 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -0.40 Total: 8.99 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.18 Total: 21.18 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -5.72 Total: -120.08 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.17 Total: -38.36 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -80.51 1.91 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.154 kcal (2) G-P(sol) polarization free energy of solvation -80.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds