Wall clock time and date at job start Tue Mar 31 2020 18:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47033 * 2 1 4 4 N 1.46501 * 109.47133 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99718 * 90.15195 * 4 3 2 6 6 O 1.21605 * 119.99500 * 185.21138 * 5 4 3 7 7 C 1.47481 * 120.00391 * 5.48724 * 5 4 3 8 8 C 1.37816 * 126.77093 * 335.36805 * 7 5 4 9 9 O 1.33502 * 108.33986 * 180.02562 * 8 7 5 10 10 C 1.34888 * 109.88812 * 0.02562 * 9 8 7 11 11 C 1.46769 * 125.65152 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00343 * 359.96822 * 11 10 9 13 13 O 1.21685 * 120.00166 * 179.97438 * 11 10 9 14 14 C 1.36057 * 108.69224 * 359.72323 * 10 9 8 15 15 C 1.46495 * 120.00256 * 270.15124 * 4 3 2 16 16 H 1.09006 * 110.63993 * 18.61794 * 15 4 3 17 17 C 1.55160 * 110.72136 * 255.47656 * 15 4 3 18 18 C 1.55381 * 101.36341 * 277.03822 * 17 15 4 19 19 N 1.47423 * 104.87747 * 323.01794 * 18 17 15 20 20 C 1.36934 * 125.64848 * 204.09782 * 19 18 17 21 21 H 1.07999 * 119.99807 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00122 * 0.03684 * 20 19 18 23 23 N 1.31616 * 120.00258 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47245 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47057 * 120.00110 * 24 22 20 27 27 H 1.48500 * 109.46945 * 239.99998 * 24 22 20 28 28 C 1.47028 * 108.70052 * 24.13161 * 19 18 17 29 29 H 1.08999 * 109.46925 * 299.99667 * 1 2 3 30 30 H 1.08992 * 109.47359 * 59.99808 * 1 2 3 31 31 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46925 * 240.00333 * 2 1 3 33 33 H 1.08997 * 109.46947 * 120.00406 * 2 1 3 34 34 H 1.08997 * 109.47505 * 60.00404 * 3 2 1 35 35 H 1.09006 * 109.47350 * 300.00131 * 3 2 1 36 36 H 1.07999 * 125.83012 * 0.03695 * 8 7 5 37 37 H 0.96997 * 119.99777 * 0.02562 * 12 11 10 38 38 H 0.97003 * 119.99935 * 179.97438 * 12 11 10 39 39 H 1.07993 * 126.68898 * 180.27700 * 14 10 9 40 40 H 1.08997 * 111.00352 * 35.21020 * 17 15 4 41 41 H 1.09000 * 111.00589 * 159.05955 * 17 15 4 42 42 H 1.09004 * 110.34731 * 204.16523 * 18 17 15 43 43 H 1.09005 * 110.44101 * 81.91719 * 18 17 15 44 44 H 0.96995 * 120.00693 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.87931 * 239.52199 * 28 19 18 46 46 H 1.08996 * 109.88069 * 118.36212 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.4458 -1.1681 6 8 5.3907 1.3501 -1.1710 7 6 3.4455 1.5714 -2.4418 8 6 2.1306 1.2304 -2.6741 9 8 1.8474 1.4951 -3.9516 10 6 2.9360 1.9996 -4.5680 11 6 3.0090 2.4102 -5.9752 12 7 1.9252 2.2950 -6.7679 13 8 4.0482 2.8545 -6.4262 14 6 3.9532 2.0711 -3.6671 15 6 4.2381 1.4390 1.2677 16 1 3.5934 1.1110 2.0832 17 6 4.8279 2.8430 1.5648 18 6 6.1384 2.8073 0.7308 19 7 6.6301 1.4233 0.8574 20 6 7.9305 1.0215 0.7072 21 1 8.1900 -0.0208 0.8199 22 6 8.9151 1.9537 0.4102 23 7 8.5990 3.2240 0.2735 24 14 10.6890 1.4054 0.2046 25 1 10.7798 -0.0630 0.4064 26 1 11.1573 1.7465 -1.1627 27 1 11.5400 2.0968 1.2062 28 6 5.4928 0.5458 1.1708 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.4461 0.8193 -1.9469 37 1 1.0967 1.9411 -6.4084 38 1 1.9734 2.5667 -7.6979 39 1 4.9531 2.4355 -3.8506 40 1 4.1594 3.6296 1.2149 41 1 5.0434 2.9595 2.6270 42 1 6.8669 3.5076 1.1395 43 1 5.9316 3.0424 -0.3134 44 1 9.2869 3.8754 0.0656 45 1 5.6641 0.0425 2.1224 46 1 5.3632 -0.1906 0.3777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664674213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:36 Heat of formation + Delta-G solvation = 15.685793 kcal Electronic energy + Delta-G solvation = -30466.300866 eV Core-core repulsion = 26360.527319 eV Total energy + Delta-G solvation = -4105.773547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.94130 -39.97888 -39.31720 -36.31549 -36.25944 -34.07638 -33.12173 -32.96982 -31.57136 -30.13509 -28.88240 -27.32973 -26.17954 -24.53146 -23.88637 -23.31921 -21.87544 -20.91468 -20.62699 -19.86640 -19.10517 -17.83345 -17.22589 -17.17857 -16.61347 -16.58927 -16.14744 -15.27983 -14.98907 -14.82441 -14.55788 -14.38558 -14.17914 -13.69246 -13.58252 -13.45954 -13.15472 -13.06947 -12.67818 -12.26418 -12.09071 -11.94273 -11.77246 -11.58492 -11.41124 -11.10750 -10.79242 -10.70781 -10.68006 -10.66577 -10.21437 -10.07479 -9.91283 -9.76523 -9.62840 -9.36246 -9.05455 -8.79833 -8.44772 -7.99750 -6.46607 -5.37052 -2.73353 0.82541 1.73465 2.42238 2.95765 3.07897 3.38622 3.55515 3.60520 3.63101 3.63696 4.40782 4.50523 4.61708 4.70840 4.75034 4.75986 4.99184 5.09733 5.28015 5.33001 5.42308 5.45230 5.53192 5.63403 5.66860 5.70689 5.73331 5.77328 5.83158 6.04218 6.06193 6.15560 6.33976 6.35734 6.53846 6.54865 6.65367 6.74986 6.86818 7.01708 7.23624 7.76831 7.84181 7.87160 7.92990 8.11892 8.63917 8.80375 9.51077 10.13009 10.79799 11.67404 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.004340 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.979894 B = 6450.041212 C = 8626.293161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.159 4.159 3 C 0.092 3.908 4 N -0.604 5.604 5 C 0.550 3.450 6 O -0.435 6.435 7 C -0.215 4.215 8 C 0.005 3.995 9 O -0.160 6.160 10 C -0.100 4.100 11 C 0.612 3.388 12 N -0.846 5.846 13 O -0.517 6.517 14 C -0.057 4.057 15 C 0.137 3.863 16 H 0.083 0.917 17 C -0.162 4.162 18 C 0.160 3.840 19 N -0.577 5.577 20 C -0.199 4.199 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.907 3.093 25 H -0.283 1.283 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.142 3.858 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.406 0.594 38 H 0.408 0.592 39 H 0.171 0.829 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.024 0.976 44 H 0.246 0.754 45 H 0.019 0.981 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.498 -3.718 -5.226 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C -0.032 4.032 4 N -0.340 5.340 5 C 0.335 3.665 6 O -0.304 6.304 7 C -0.220 4.220 8 C -0.066 4.066 9 O -0.055 6.055 10 C -0.151 4.151 11 C 0.397 3.603 12 N -0.410 5.410 13 O -0.393 6.393 14 C -0.078 4.078 15 C 0.034 3.966 16 H 0.101 0.899 17 C -0.201 4.201 18 C 0.035 3.965 19 N -0.302 5.302 20 C -0.328 4.328 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.573 5.573 24 Si 0.739 3.261 25 H -0.208 1.208 26 H -0.221 1.221 27 H -0.222 1.222 28 C 0.015 3.985 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.249 0.751 37 H 0.235 0.765 38 H 0.240 0.760 39 H 0.189 0.811 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.037 0.963 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.076 -3.469 -5.581 23.994 hybrid contribution 0.382 -0.403 -0.288 0.626 sum -22.694 -3.872 -5.870 23.758 Atomic orbital electron populations 1.21788 0.94967 1.02331 1.02144 1.22210 0.96051 0.97822 1.03719 1.21996 0.81168 0.96336 1.03696 1.47680 1.05150 1.75388 1.05777 1.17351 0.87487 0.79700 0.81978 1.91261 1.11276 1.42429 1.85458 1.21073 0.94536 1.09336 0.97019 1.26220 0.97014 1.00212 0.83128 1.83880 1.36568 1.62642 1.22395 1.21735 0.86882 1.11857 0.94644 1.16503 0.83881 0.77419 0.82500 1.43657 1.14175 1.68309 1.14857 1.90971 1.29650 1.45357 1.73340 1.21999 1.00206 0.95931 0.89669 1.22109 0.93289 0.98004 0.83206 0.89908 1.23601 1.00704 0.94650 1.01190 1.22013 0.90443 0.88260 0.95750 1.44134 1.01779 1.02420 1.81887 1.19010 0.82020 0.92907 1.38823 0.91106 1.24654 0.97668 0.95634 1.03015 1.69815 1.30683 1.00355 1.56449 0.86082 0.85454 0.77322 0.77216 1.20841 1.22083 1.22154 1.21347 0.87129 0.93234 0.96808 0.92037 0.92668 0.92096 0.91355 0.90347 0.89938 0.90013 0.75115 0.76546 0.76009 0.81131 0.92535 0.91512 0.88577 0.95841 0.94322 0.96330 0.95746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.77 37.16 0.36 -0.45 16 2 C -0.16 -1.26 5.26 -26.73 -0.14 -1.40 16 3 C 0.09 0.89 4.88 -4.04 -0.02 0.87 16 4 N -0.60 -9.21 2.51 -165.27 -0.42 -9.63 16 5 C 0.55 10.27 6.66 -12.49 -0.08 10.19 16 6 O -0.44 -10.74 10.64 5.27 0.06 -10.69 16 7 C -0.21 -3.30 5.79 -104.95 -0.61 -3.91 16 8 C 0.01 0.06 9.31 30.58 0.28 0.34 16 9 O -0.16 -1.70 10.33 6.16 0.06 -1.64 16 10 C -0.10 -1.32 7.09 -36.92 -0.26 -1.58 16 11 C 0.61 7.73 8.06 -12.81 -0.10 7.63 16 12 N -0.85 -6.25 8.87 30.28 0.27 -5.99 16 13 O -0.52 -8.65 17.68 5.20 0.09 -8.56 16 14 C -0.06 -0.92 10.49 -39.03 -0.41 -1.33 16 15 C 0.14 2.36 3.64 -66.10 -0.24 2.12 16 16 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 17 C -0.16 -3.15 6.77 -24.32 -0.16 -3.31 16 18 C 0.16 4.15 4.96 -2.27 -0.01 4.14 16 19 N -0.58 -15.69 2.17 -169.77 -0.37 -16.06 16 20 C -0.20 -5.95 10.27 -15.06 -0.15 -6.11 16 21 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.02 -0.46 5.49 -17.43 -0.10 -0.56 16 23 N -0.92 -28.89 10.09 55.49 0.56 -28.34 16 24 Si 0.91 23.84 29.55 -169.99 -5.02 18.82 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 28 C 0.14 3.13 5.96 -3.07 -0.02 3.11 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.23 7.49 -51.93 -0.39 -0.16 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.08 0.72 4.62 -51.93 -0.24 0.48 16 36 H 0.23 1.77 2.80 -52.49 -0.15 1.62 16 37 H 0.41 1.95 8.57 -40.82 -0.35 1.60 16 38 H 0.41 2.28 8.93 -40.82 -0.36 1.92 16 39 H 0.17 3.09 8.06 -52.49 -0.42 2.67 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 2.82 5.87 -51.93 -0.30 2.52 16 43 H 0.02 0.68 5.91 -51.93 -0.31 0.37 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.58 6.84 -51.93 -0.36 0.22 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -38.55 364.48 -7.09 -45.64 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.15 Total: 1.19 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -1.66 Total: 9.75 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.04 Total: -60.01 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.21 Total: -20.89 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -5.02 Total: 18.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.55 -7.09 -45.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664674213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.325 kcal (2) G-P(sol) polarization free energy of solvation -38.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds