Wall clock time and date at job start Tue Mar 31 2020 18:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 N 1.46504 * 109.46844 * 179.97438 * 3 2 1 5 5 C 1.34783 * 119.99926 * 269.52698 * 4 3 2 6 6 O 1.21599 * 119.99885 * 186.26766 * 5 4 3 7 7 C 1.47495 * 119.99837 * 6.27256 * 5 4 3 8 8 C 1.37806 * 126.77550 * 8.11814 * 7 5 4 9 9 O 1.33498 * 108.34321 * 179.89163 * 8 7 5 10 10 C 1.34881 * 109.88475 * 0.38857 * 9 8 7 11 11 C 1.46779 * 125.65130 * 179.79461 * 10 9 8 12 12 N 1.34772 * 120.00163 * 359.96017 * 11 10 9 13 13 O 1.21682 * 119.99481 * 179.97438 * 11 10 9 14 14 C 1.36055 * 108.69482 * 359.76104 * 10 9 8 15 15 C 1.46495 * 120.00060 * 89.53125 * 4 3 2 16 16 H 1.08997 * 110.88545 * 356.12012 * 15 4 3 17 17 C 1.55154 * 111.00520 * 119.99861 * 15 4 3 18 18 C 1.54327 * 102.94411 * 153.57657 * 17 15 4 19 19 N 1.47022 * 107.26948 * 337.80528 * 18 17 15 20 20 C 1.36930 * 125.64678 * 178.98667 * 19 18 17 21 21 H 1.07998 * 119.99963 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00143 * 359.97438 * 20 19 18 23 23 N 1.31617 * 119.99838 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99822 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47582 * 59.99933 * 24 22 20 26 26 H 1.48503 * 109.46987 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46940 * 299.99612 * 24 22 20 28 28 C 1.47427 * 108.70172 * 358.94133 * 19 18 17 29 29 H 1.09005 * 109.46958 * 59.99770 * 1 2 3 30 30 H 1.08992 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47215 * 300.00611 * 1 2 3 32 32 H 1.09005 * 109.46912 * 119.99675 * 2 1 3 33 33 H 1.08992 * 109.47339 * 239.99632 * 2 1 3 34 34 H 1.08992 * 109.47132 * 299.99335 * 3 2 1 35 35 H 1.09005 * 109.47214 * 59.99943 * 3 2 1 36 36 H 1.08004 * 125.82980 * 0.02562 * 8 7 5 37 37 H 0.96999 * 119.99841 * 359.97438 * 12 11 10 38 38 H 0.97000 * 120.00481 * 180.02562 * 12 11 10 39 39 H 1.08004 * 126.69251 * 179.97438 * 14 10 9 40 40 H 1.09003 * 110.72372 * 271.93928 * 17 15 4 41 41 H 1.09002 * 110.72222 * 35.21372 * 17 15 4 42 42 H 1.08999 * 109.88204 * 97.22615 * 18 17 15 43 43 H 1.09006 * 109.88033 * 218.23635 * 18 17 15 44 44 H 0.97003 * 119.99501 * 180.02562 * 23 22 20 45 45 H 1.08999 * 110.36656 * 265.28792 * 28 19 18 46 46 H 1.09005 * 110.36177 * 142.96680 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1784 1.4522 1.1681 6 8 5.3890 1.5672 1.1708 7 6 3.4470 1.3234 2.4424 8 6 2.1093 1.0321 2.6001 9 8 1.8368 1.0030 3.9066 10 6 2.9526 1.2747 4.6141 11 6 3.0436 1.3366 6.0778 12 7 1.9490 1.1119 6.8312 13 8 4.1074 1.5912 6.6109 14 6 3.9799 1.4811 3.7462 15 6 4.2381 1.4318 -1.2677 16 1 3.5528 1.3559 -2.1119 17 6 5.1434 2.6852 -1.3973 18 6 6.2671 2.2040 -2.3393 19 7 6.3067 0.7365 -2.2576 20 6 7.1543 -0.0792 -2.9584 21 1 7.1045 -1.1500 -2.8272 22 6 8.0774 0.4702 -3.8376 23 7 8.1383 1.7753 -3.9971 24 14 9.2332 -0.6427 -4.7941 25 1 8.4401 -1.5702 -5.6402 26 1 10.1149 0.1838 -5.6571 27 1 10.0640 -1.4265 -3.8450 28 6 5.2834 0.2889 -1.2953 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.4026 0.8552 1.8028 37 1 1.1009 0.9095 6.4061 38 1 2.0090 1.1531 7.7984 39 1 5.0021 1.7191 4.0011 40 1 4.5937 3.5135 -1.8444 41 1 5.5494 2.9697 -0.4266 42 1 6.0510 2.5127 -3.3621 43 1 7.2223 2.6212 -2.0203 44 1 8.7832 2.1591 -4.6117 45 1 5.7245 0.1543 -0.3077 46 1 4.8226 -0.6385 -1.6356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664674214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:39 Heat of formation + Delta-G solvation = -29.357188 kcal Electronic energy + Delta-G solvation = -29670.998621 eV Core-core repulsion = 25563.271864 eV Total energy + Delta-G solvation = -4107.726757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.05282 -41.36719 -40.34668 -38.52056 -37.57450 -35.09802 -34.75421 -34.11499 -33.37186 -31.43435 -30.82586 -29.04078 -27.21375 -26.62482 -25.02463 -24.41182 -22.67620 -22.27892 -22.01518 -21.94771 -20.41553 -19.21354 -18.78516 -18.30571 -18.14799 -17.64486 -17.43027 -16.77334 -16.62715 -16.03738 -15.85994 -15.72463 -15.55151 -15.26683 -14.90942 -14.60019 -14.49632 -14.34499 -14.16506 -13.76654 -13.70620 -13.58866 -13.00485 -12.93733 -12.77842 -12.71506 -12.46565 -12.10834 -12.08098 -12.01523 -11.86731 -11.74894 -11.74219 -11.57764 -11.23132 -10.89411 -10.74559 -10.69696 -9.90801 -9.69997 -8.88052 -7.85377 -5.21699 -0.21251 0.39434 1.36857 1.43079 1.48212 1.54162 1.78130 1.89131 2.20827 2.44864 2.50552 3.23714 3.32717 3.49076 3.65123 3.72017 3.81651 3.87705 4.00795 4.09909 4.20369 4.25927 4.29682 4.32693 4.54445 4.57021 4.59250 4.69176 4.73260 4.86821 4.92316 4.95156 5.02862 5.08832 5.21604 5.33618 5.40057 5.41224 5.53980 5.63651 5.66692 5.72771 5.74215 6.17862 6.24841 6.37726 7.07978 7.08074 7.13966 7.75313 8.41114 9.24975 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.002892 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.399800 B = 9680.370090 C =10682.826852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.165 4.165 3 C 0.076 3.924 4 N -0.591 5.591 5 C 0.574 3.426 6 O -0.566 6.566 7 C -0.257 4.257 8 C 0.057 3.943 9 O -0.133 6.133 10 C -0.086 4.086 11 C 0.611 3.389 12 N -0.814 5.814 13 O -0.566 6.566 14 C -0.088 4.088 15 C 0.155 3.845 16 H 0.124 0.876 17 C -0.142 4.142 18 C 0.195 3.805 19 N -0.622 5.622 20 C -0.245 4.245 21 H 0.080 0.920 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.983 3.017 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.124 3.876 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.279 0.721 37 H 0.423 0.577 38 H 0.421 0.579 39 H 0.146 0.854 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.022 0.978 43 H -0.008 1.008 44 H 0.247 0.753 45 H 0.018 0.982 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.833 -1.567 16.201 32.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.203 4.203 3 C -0.044 4.044 4 N -0.322 5.322 5 C 0.364 3.636 6 O -0.445 6.445 7 C -0.261 4.261 8 C -0.015 4.015 9 O -0.025 6.025 10 C -0.138 4.138 11 C 0.395 3.605 12 N -0.378 5.378 13 O -0.446 6.446 14 C -0.109 4.109 15 C 0.051 3.949 16 H 0.142 0.858 17 C -0.181 4.181 18 C 0.069 3.931 19 N -0.349 5.349 20 C -0.374 4.374 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.810 3.190 25 H -0.195 1.195 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.002 4.002 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.293 0.707 37 H 0.255 0.745 38 H 0.255 0.745 39 H 0.164 0.836 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.010 0.990 44 H 0.057 0.943 45 H 0.036 0.964 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.623 -1.378 16.408 31.303 hybrid contribution 1.574 -0.364 -0.622 1.731 sum -25.049 -1.742 15.786 29.659 Atomic orbital electron populations 1.21808 0.92011 1.03455 1.03743 1.22277 0.98491 0.95980 1.03595 1.22639 0.76915 0.98529 1.06349 1.47745 1.07873 1.72460 1.04073 1.17722 0.86284 0.76186 0.83419 1.90849 1.15965 1.50287 1.87444 1.20611 0.95852 1.15997 0.93671 1.27348 0.96072 0.94598 0.83495 1.83977 1.33859 1.66940 1.17744 1.21665 0.85397 1.14034 0.92699 1.16489 0.84594 0.76366 0.83043 1.43440 1.11256 1.71651 1.11465 1.90950 1.30300 1.51214 1.72153 1.21871 1.00401 0.97776 0.90867 1.22083 0.92884 0.94625 0.85289 0.85836 1.23077 0.97236 0.97962 0.99873 1.20769 0.93794 0.83188 0.95307 1.44620 1.39764 1.02753 1.47753 1.19417 1.11264 0.89941 1.16772 0.90185 1.25717 1.01380 0.97534 1.01431 1.70202 1.38915 1.10612 1.40384 0.85094 0.78338 0.77473 0.78059 1.19509 1.21796 1.20846 1.21921 0.89794 0.95928 0.92554 0.91168 0.91493 0.90275 0.91282 0.91268 0.86886 0.87341 0.70669 0.74503 0.74495 0.83568 0.89452 0.92257 0.96016 0.98991 0.94343 0.96400 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.74 71.98 0.70 0.04 16 2 C -0.17 -1.78 5.24 30.59 0.16 -1.62 16 3 C 0.08 1.03 4.85 86.38 0.42 1.44 16 4 N -0.59 -15.73 2.56 -793.90 -2.03 -17.76 16 5 C 0.57 18.83 6.92 86.68 0.60 19.43 16 6 O -0.57 -25.44 13.01 -4.03 -0.05 -25.50 16 7 C -0.26 -6.39 5.97 -20.08 -0.12 -6.51 16 8 C 0.06 0.80 8.82 67.72 0.60 1.40 16 9 O -0.13 -1.78 10.33 -0.74 -0.01 -1.79 16 10 C -0.09 -1.75 7.09 24.00 0.17 -1.58 16 11 C 0.61 12.01 8.06 86.48 0.70 12.71 16 12 N -0.81 -6.84 8.87 -176.33 -1.56 -8.40 16 13 O -0.57 -16.47 17.68 -4.29 -0.08 -16.54 16 14 C -0.09 -2.37 10.42 22.62 0.24 -2.14 16 15 C 0.16 5.39 3.54 46.38 0.16 5.55 16 16 H 0.12 3.62 7.92 -2.39 -0.02 3.60 16 17 C -0.14 -5.89 6.32 31.78 0.20 -5.69 16 18 C 0.19 10.58 5.37 86.73 0.47 11.05 16 19 N -0.62 -34.93 3.39 -691.97 -2.35 -37.28 16 20 C -0.25 -14.72 10.28 84.04 0.86 -13.86 16 21 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 22 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 23 N -0.95 -60.46 10.31 21.65 0.22 -60.24 16 24 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 28 C 0.12 5.64 6.58 86.85 0.57 6.21 16 29 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 -0.01 7.34 -2.39 -0.02 -0.02 16 32 H 0.07 0.80 6.28 -2.38 -0.01 0.79 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.13 8.00 -2.39 -0.02 1.11 16 35 H 0.11 0.94 4.82 -2.38 -0.01 0.93 16 36 H 0.28 1.89 2.17 -2.91 -0.01 1.88 16 37 H 0.42 0.98 8.57 -92.71 -0.79 0.19 16 38 H 0.42 2.17 8.93 -92.71 -0.83 1.34 16 39 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.06 2.70 6.04 -2.39 -0.01 2.69 16 42 H 0.02 1.25 7.38 -2.39 -0.02 1.24 16 43 H -0.01 -0.52 7.50 -2.38 -0.02 -0.54 16 44 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.02 0.93 5.75 -2.39 -0.01 0.91 16 46 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -90.33 367.35 1.79 -88.53 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -0.57 Total: 6.13 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.19 Total: 22.82 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -5.72 Total: -123.68 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.14 Total: -43.83 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -90.33 1.79 -88.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664674214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.175 kcal (2) G-P(sol) polarization free energy of solvation -90.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds