Wall clock time and date at job start Tue Mar 31 2020 18:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35528 * 117.00135 * 2 1 4 4 C 1.38818 * 120.89112 * 0.25432 * 3 2 1 5 5 C 1.38713 * 119.19382 * 180.26274 * 4 3 2 6 6 O 1.35525 * 119.47099 * 179.75082 * 5 4 3 7 7 N 1.32597 * 121.05761 * 359.47398 * 5 4 3 8 8 C 1.31611 * 121.97274 * 0.25837 * 7 5 4 9 9 C 1.39545 * 120.66937 * 0.02562 * 8 7 5 10 10 C 1.47345 * 120.55202 * 180.02562 * 9 8 7 11 11 O 1.21612 * 119.99621 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00186 * 359.97438 * 10 9 8 13 13 C 1.46494 * 120.00054 * 174.96465 * 12 10 9 14 14 C 1.53006 * 109.47258 * 304.32451 * 13 12 10 15 15 C 1.52994 * 109.47169 * 64.32484 * 13 12 10 16 16 N 1.46501 * 109.47175 * 60.00260 * 15 13 12 17 17 C 1.36931 * 120.00073 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.38820 * 120.00101 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99532 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47403 * 59.99741 * 21 19 17 23 23 H 1.48508 * 109.46942 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47314 * 299.99759 * 21 19 17 25 25 C 1.52998 * 109.47049 * 184.32697 * 13 12 10 26 26 C 1.53004 * 117.49894 * 132.86224 * 25 13 12 27 27 C 1.53000 * 117.50004 * 64.20062 * 25 13 12 28 28 H 1.09002 * 109.47323 * 59.99961 * 1 2 3 29 29 H 1.08996 * 109.47596 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47189 * 299.99800 * 1 2 3 31 31 H 1.07991 * 120.40593 * 0.02562 * 4 3 2 32 32 H 0.96694 * 114.00286 * 269.72780 * 6 5 4 33 33 H 1.07998 * 119.66093 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99666 * 354.97140 * 12 10 9 35 35 H 1.09001 * 109.46567 * 59.99917 * 14 13 12 36 36 H 1.08999 * 109.47316 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47177 * 300.00356 * 14 13 12 38 38 H 1.08999 * 109.47184 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.47396 * 299.99922 * 15 13 12 40 40 H 0.97002 * 119.99690 * 359.97438 * 16 15 13 41 41 H 0.97007 * 119.99396 * 180.02562 * 20 19 17 42 42 H 1.09006 * 115.54914 * 278.52855 * 25 13 12 43 43 H 1.09001 * 117.50005 * 359.97438 * 26 25 13 44 44 H 1.09001 * 117.50113 * 145.01916 * 26 25 13 45 45 H 1.09005 * 117.49888 * 214.97753 * 27 25 13 46 46 H 1.08998 * 117.49798 * 0.02562 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3064 2.3834 0.0053 5 6 1.9725 3.6001 -0.0004 6 8 1.2577 4.7516 -0.0005 7 7 3.2973 3.6548 -0.0004 8 6 4.0396 2.5679 -0.0001 9 6 3.4500 1.3032 -0.0002 10 6 4.2835 0.0882 0.0008 11 8 3.7589 -1.0090 0.0011 12 7 5.6272 0.1927 0.0013 13 6 6.4554 -1.0104 0.1137 14 6 6.0643 -1.7829 1.3751 15 6 6.2377 -1.8959 -1.1148 16 7 6.6123 -1.1563 -2.3226 17 6 6.5007 -1.7501 -3.5514 18 1 6.1369 -2.7640 -3.6302 19 6 6.8552 -1.0491 -4.6959 20 7 7.2981 0.1866 -4.5999 21 14 6.7036 -1.8594 -6.3721 22 1 5.2890 -2.2434 -6.6102 23 1 7.1413 -0.9067 -7.4239 24 1 7.5595 -3.0722 -6.4148 25 6 7.9294 -0.6088 0.1981 26 6 8.7800 -1.2682 1.2856 27 6 8.3721 0.2013 1.4183 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2270 2.3513 0.0099 32 1 1.0503 5.0857 -0.8838 33 1 5.1160 2.6559 0.0004 34 1 6.0458 1.0646 -0.0726 35 1 5.0142 -2.0690 1.3149 36 1 6.6802 -2.6783 1.4584 37 1 6.2194 -1.1520 2.2503 38 1 6.8537 -2.7913 -1.0310 39 1 5.1877 -2.1821 -1.1750 40 1 6.9388 -0.2456 -2.2519 41 1 7.5454 0.6767 -5.3998 42 1 8.4120 -0.3888 -0.7542 43 1 8.2896 -1.9878 1.9411 44 1 9.8224 -1.4816 1.0489 45 1 9.1462 0.9539 1.2688 46 1 7.6133 0.4477 2.1610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666021953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:42 Heat of formation + Delta-G solvation = -21.387621 kcal Electronic energy + Delta-G solvation = -30064.255983 eV Core-core repulsion = 25956.874812 eV Total energy + Delta-G solvation = -4107.381171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.13351 -39.79257 -38.84360 -37.67625 -36.83222 -34.59821 -33.43246 -31.88514 -31.48328 -30.43727 -29.33766 -27.68069 -25.84077 -24.51987 -23.50257 -23.01289 -22.30844 -22.00615 -20.53935 -19.48295 -18.79909 -17.90134 -17.41934 -17.09805 -16.97048 -16.10584 -15.69914 -15.43772 -15.09914 -14.97796 -14.65552 -14.48093 -14.35086 -14.03284 -13.51731 -13.33294 -13.03493 -12.78520 -12.62960 -12.26506 -12.14242 -12.01389 -11.87038 -11.75329 -11.66034 -11.32819 -11.01369 -10.80017 -10.76196 -10.70589 -10.15651 -10.07889 -9.91109 -9.77257 -9.61048 -9.33333 -9.18551 -8.94851 -8.72640 -8.49413 -6.78752 -5.69124 -2.94633 0.48798 1.09434 2.88747 2.96870 3.30471 3.42990 3.48871 3.52561 3.54189 3.84923 4.12855 4.33540 4.56199 4.66562 4.70658 4.84925 4.87109 4.93547 5.11407 5.14446 5.20929 5.25603 5.26967 5.39361 5.41738 5.50003 5.60369 5.66786 5.77978 5.85745 6.02142 6.08407 6.11683 6.27500 6.30661 6.33043 6.50869 6.61651 6.75013 6.95899 6.99369 7.18422 7.21268 7.69245 7.78619 7.94725 8.50799 8.66180 9.62029 10.20859 10.56800 11.54167 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008631 B = 0.004318 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.395082 B = 6482.370082 C = 7825.085785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.267 6.267 3 C 0.237 3.763 4 C -0.291 4.291 5 C 0.363 3.637 6 O -0.482 6.482 7 N -0.528 5.528 8 C 0.198 3.802 9 C -0.223 4.223 10 C 0.573 3.427 11 O -0.512 6.512 12 N -0.706 5.706 13 C 0.205 3.795 14 C -0.164 4.164 15 C 0.144 3.856 16 N -0.725 5.725 17 C -0.228 4.228 18 H 0.067 0.933 19 C -0.016 4.016 20 N -0.937 5.937 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.183 4.183 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.149 0.851 32 H 0.406 0.594 33 H 0.172 0.828 34 H 0.395 0.605 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.046 0.954 40 H 0.382 0.618 41 H 0.253 0.747 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.379 5.297 14.305 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.175 6.175 3 C 0.180 3.820 4 C -0.313 4.313 5 C 0.186 3.814 6 O -0.290 6.290 7 N -0.251 5.251 8 C 0.040 3.960 9 C -0.229 4.229 10 C 0.358 3.642 11 O -0.388 6.388 12 N -0.358 5.358 13 C 0.119 3.881 14 C -0.222 4.222 15 C 0.016 3.984 16 N -0.370 5.370 17 C -0.360 4.360 18 H 0.085 0.915 19 C -0.211 4.211 20 N -0.587 5.587 21 Si 0.736 3.264 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.169 4.169 26 C -0.210 4.210 27 C -0.220 4.220 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.265 0.735 33 H 0.189 0.811 34 H 0.230 0.770 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.215 0.785 41 H 0.063 0.937 42 H 0.141 0.859 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.386 4.903 14.786 18.187 hybrid contribution -0.458 -0.071 -1.683 1.745 sum -9.844 4.832 13.103 17.086 Atomic orbital electron populations 1.23256 0.78201 1.04822 1.01410 1.86416 1.21183 1.24490 1.85380 1.19131 0.90903 0.84828 0.87107 1.22050 1.02079 0.91696 1.15470 1.18966 0.86643 0.84908 0.90871 1.84676 1.71290 1.38792 1.34261 1.67191 1.06383 1.33304 1.18180 1.22674 0.99834 0.84937 0.88598 1.20639 0.91503 0.96348 1.14435 1.17417 0.81945 0.87848 0.76943 1.90763 1.72754 1.26885 1.48417 1.45793 1.05161 1.10041 1.74787 1.20016 0.86967 0.84859 0.96239 1.22287 1.03999 0.99949 0.96015 1.21066 0.99009 0.93099 0.85203 1.42219 1.78750 1.15276 1.00714 1.19195 1.35462 0.97169 0.84167 0.91451 1.24660 1.02591 0.96363 0.97530 1.69636 1.51135 1.10047 1.27849 0.86299 0.77647 0.78122 0.84348 1.21497 1.21822 1.21378 1.22576 0.94551 1.04608 0.95151 1.23054 1.00147 0.95667 1.02084 1.22964 1.03581 0.94529 1.00965 0.92236 0.87469 0.92367 0.83306 0.73546 0.81145 0.77031 0.90100 0.91569 0.92963 0.95907 0.93667 0.78450 0.93710 0.85930 0.88281 0.88917 0.88901 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 101.05 0.99 1.16 16 2 O -0.27 -3.92 8.71 -39.58 -0.34 -4.26 16 3 C 0.24 3.41 6.74 -38.36 -0.26 3.15 16 4 C -0.29 -3.40 9.02 -39.19 -0.35 -3.75 16 5 C 0.36 4.50 7.73 -17.05 -0.13 4.37 16 6 O -0.48 -4.81 13.54 -18.27 -0.25 -5.06 16 7 N -0.53 -7.33 10.37 -13.04 -0.14 -7.47 16 8 C 0.20 2.69 10.70 -17.16 -0.18 2.50 16 9 C -0.22 -3.43 5.90 -104.70 -0.62 -4.04 16 10 C 0.57 10.06 7.17 -12.56 -0.09 9.97 16 11 O -0.51 -10.47 11.51 -16.03 -0.18 -10.65 16 12 N -0.71 -11.25 4.68 -48.70 -0.23 -11.47 16 13 C 0.20 3.39 0.54 -131.82 -0.07 3.32 16 14 C -0.16 -2.42 6.98 37.16 0.26 -2.16 16 15 C 0.14 3.10 5.03 -4.04 -0.02 3.08 16 16 N -0.73 -18.43 5.04 -59.91 -0.30 -18.73 16 17 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.94 -28.25 13.06 55.49 0.72 -27.52 16 21 Si 0.90 22.96 29.55 -169.99 -5.02 17.93 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C -0.15 -2.26 4.84 -90.62 -0.44 -2.70 16 26 C -0.17 -2.15 9.64 -26.69 -0.26 -2.41 16 27 C -0.18 -2.17 9.82 -26.69 -0.26 -2.43 16 28 H 0.06 0.46 7.72 -51.93 -0.40 0.06 16 29 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 31 H 0.15 1.30 6.45 -52.49 -0.34 0.97 16 32 H 0.41 2.04 9.06 45.56 0.41 2.45 16 33 H 0.17 1.90 6.42 -52.49 -0.34 1.56 16 34 H 0.39 5.48 6.54 -40.82 -0.27 5.21 16 35 H 0.08 1.35 6.03 -51.93 -0.31 1.04 16 36 H 0.07 0.90 6.78 -51.93 -0.35 0.54 16 37 H 0.05 0.68 6.98 -51.93 -0.36 0.31 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 1.09 6.32 -51.93 -0.33 0.76 16 40 H 0.38 9.88 6.62 -40.82 -0.27 9.61 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.12 2.22 7.08 -51.93 -0.37 1.85 16 43 H 0.10 1.15 5.88 -51.93 -0.31 0.85 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.01 7.34 -51.93 -0.38 0.63 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -36.21 372.85 -7.05 -43.26 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -5.25 Total: 15.57 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.68 Total: 2.79 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.06 Total: -65.19 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.78 Total: -19.97 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.21 -7.05 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666021953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.871 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds