Wall clock time and date at job start Tue Mar 31 2020 18:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47405 * 2 1 4 4 N 1.46897 * 109.47040 * 180.02562 * 3 2 1 5 5 C 1.46904 * 110.99590 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47039 * 180.02562 * 5 4 3 7 7 O 1.21298 * 120.00192 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00348 * 180.02562 * 6 5 4 9 9 C 1.37096 * 120.00206 * 179.97438 * 8 6 5 10 10 H 1.07998 * 120.00087 * 0.02562 * 9 8 6 11 11 C 1.38952 * 119.99868 * 179.97438 * 9 8 6 12 12 N 1.31410 * 120.00032 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00052 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47178 * 59.99865 * 13 11 9 15 15 H 1.48497 * 109.47537 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47246 * 300.00257 * 13 11 9 17 17 N 1.46500 * 109.46825 * 120.00162 * 2 1 3 18 18 C 1.34775 * 119.99872 * 298.32029 * 17 2 1 19 19 O 1.21611 * 120.00171 * 5.13568 * 18 17 2 20 20 C 1.47384 * 120.00228 * 185.12687 * 18 17 2 21 21 C 1.47016 * 127.19464 * 180.02562 * 20 18 17 22 22 C 1.34178 * 105.95609 * 179.97438 * 21 20 18 23 23 O 1.34221 * 109.12091 * 0.02562 * 22 21 20 24 24 C 1.33647 * 110.90940 * 359.75862 * 23 22 21 25 25 C 1.53003 * 109.46972 * 239.99732 * 2 1 3 26 26 C 1.53002 * 117.49804 * 12.08315 * 25 2 1 27 27 C 1.53001 * 117.49818 * 303.45805 * 25 2 1 28 28 H 1.08992 * 109.47149 * 60.00234 * 1 2 3 29 29 H 1.09005 * 109.46589 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46834 * 299.99673 * 1 2 3 31 31 H 1.08999 * 109.46819 * 59.99556 * 3 2 1 32 32 H 1.09002 * 109.46762 * 299.99931 * 3 2 1 33 33 H 1.00900 * 111.00112 * 303.94744 * 4 3 2 34 34 H 1.09006 * 109.47083 * 299.99673 * 5 4 3 35 35 H 1.08993 * 109.47636 * 59.99757 * 5 4 3 36 36 H 0.97001 * 119.99621 * 359.97438 * 8 6 5 37 37 H 0.97000 * 119.99735 * 180.02562 * 12 11 9 38 38 H 0.96999 * 120.00093 * 118.33009 * 17 2 1 39 39 H 1.07998 * 127.02419 * 359.97438 * 21 20 18 40 40 H 1.07994 * 125.44014 * 179.97438 * 22 21 20 41 41 H 1.08004 * 125.80093 * 180.27111 * 24 23 22 42 42 H 1.08998 * 115.54769 * 157.78864 * 25 2 1 43 43 H 1.08997 * 117.49925 * 359.97438 * 26 25 2 44 44 H 1.08993 * 117.49743 * 145.02241 * 26 25 2 45 45 H 1.09000 * 117.49586 * 214.97905 * 27 25 2 46 46 H 1.09003 * 117.50087 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0355 2.8138 0.0000 6 6 5.5420 2.7736 -0.0013 7 8 6.1202 1.7073 -0.0021 8 7 6.2468 3.9224 -0.0005 9 6 7.6173 3.8857 -0.0012 10 1 8.1321 2.9364 -0.0027 11 6 8.3439 5.0701 -0.0009 12 7 7.7175 6.2253 0.0005 13 14 10.2112 5.0203 -0.0025 14 1 10.6864 4.3082 -1.2159 15 1 10.7435 6.4066 -0.0013 16 1 10.6884 4.3063 1.2091 17 7 2.0183 -0.6907 1.1962 18 6 1.7209 -0.2108 2.4200 19 8 0.9711 0.7398 2.5347 20 6 2.3041 -0.8381 3.6193 21 6 2.0893 -0.4474 5.0203 22 6 2.8188 -1.2993 5.7568 23 8 3.4482 -2.1588 4.9402 24 6 3.1522 -1.9058 3.6618 25 6 2.0400 -0.7213 -1.2492 26 6 1.0243 -1.0295 -2.3512 27 6 1.5700 -2.1596 -1.4758 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8900 33 1 3.8710 0.9162 0.7806 34 1 3.6857 3.3377 -0.8896 35 1 3.6865 3.3367 0.8903 36 1 5.7844 4.7751 0.0005 37 1 8.2248 7.0521 0.0003 38 1 2.5558 -1.4932 1.1074 39 1 1.4706 0.3603 5.3826 40 1 2.8892 -1.2937 6.8344 41 1 3.5229 -2.4526 2.8073 42 1 3.0551 -0.4693 -1.5561 43 1 -0.0073 -0.7188 -2.1859 44 1 1.3710 -0.9802 -3.3833 45 1 2.2758 -2.8537 -1.9322 46 1 0.8972 -2.5919 -0.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732239886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:17 Heat of formation + Delta-G solvation = -22.124057 kcal Electronic energy + Delta-G solvation = -29169.822053 eV Core-core repulsion = 25062.408948 eV Total energy + Delta-G solvation = -4107.413105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.71410 -40.44074 -38.21866 -37.94545 -35.29522 -34.05502 -33.65402 -33.00044 -31.22411 -30.97788 -29.53521 -27.58145 -25.33716 -24.41020 -23.37457 -22.70175 -22.37170 -21.66729 -20.16044 -19.47533 -19.08314 -18.50117 -17.84667 -16.75060 -16.34515 -16.21852 -15.93549 -15.40792 -15.24636 -15.14627 -14.75142 -14.40080 -14.35407 -14.01750 -13.68269 -13.44137 -13.14414 -13.09879 -12.77174 -12.56752 -12.53608 -12.38110 -11.76948 -11.56486 -11.52987 -11.39270 -11.32021 -11.19552 -10.98737 -10.45591 -10.42558 -10.21939 -10.18511 -9.98561 -9.80621 -9.46929 -9.21086 -8.98803 -8.37422 -7.96083 -7.89952 -6.38506 -3.79333 1.17421 1.90084 2.71046 2.92918 3.21745 3.27147 3.27782 3.31515 3.80952 3.95486 4.13257 4.32436 4.39694 4.47888 4.52421 4.73988 4.85622 4.92909 5.03773 5.18297 5.22134 5.26952 5.30831 5.45004 5.47994 5.48993 5.66519 5.69521 5.71883 5.74955 5.78087 5.92177 5.98973 6.00778 6.06733 6.08322 6.16620 6.31987 6.38267 6.49235 6.74202 7.28141 7.45230 7.57538 7.73471 8.09378 8.15580 8.64937 9.20778 9.58159 10.09743 10.79283 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.003168 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.514206 B = 8836.498617 C =10590.745133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.216 3.784 3 C 0.047 3.953 4 N -0.662 5.662 5 C 0.050 3.950 6 C 0.443 3.557 7 O -0.585 6.585 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.715 5.715 18 C 0.588 3.412 19 O -0.532 6.532 20 C -0.236 4.236 21 C -0.165 4.165 22 C -0.042 4.042 23 O -0.174 6.174 24 C 0.024 3.976 25 C -0.148 4.148 26 C -0.173 4.173 27 C -0.184 4.184 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.345 0.655 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.399 0.601 39 H 0.159 0.841 40 H 0.208 0.792 41 H 0.211 0.789 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 -15.877 4.349 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.130 3.870 3 C -0.083 4.083 4 N -0.294 5.294 5 C -0.083 4.083 6 C 0.228 3.772 7 O -0.469 6.469 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.200 1.200 17 N -0.366 5.366 18 C 0.376 3.624 19 O -0.410 6.410 20 C -0.240 4.240 21 C -0.184 4.184 22 C -0.108 4.108 23 O -0.069 6.069 24 C -0.047 4.047 25 C -0.167 4.167 26 C -0.211 4.211 27 C -0.221 4.221 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.164 0.836 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.176 0.824 40 H 0.225 0.775 41 H 0.228 0.772 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.568 -15.971 3.848 22.632 hybrid contribution 0.685 0.740 0.787 1.280 sum -14.882 -15.230 4.635 21.793 Atomic orbital electron populations 1.22342 0.94257 1.02241 1.03713 1.19797 0.93231 0.91454 0.82496 1.22341 0.88945 0.95015 1.02049 1.60109 1.05249 1.13164 1.50872 1.21662 0.94946 0.90493 1.01165 1.19816 0.88091 0.84993 0.84273 1.90500 1.71231 1.29663 1.55528 1.41856 1.06990 1.06806 1.64397 1.19644 0.81119 0.94468 1.47677 0.88030 1.25255 1.00656 0.94646 0.97370 1.69609 1.36663 0.97484 1.50585 0.85925 0.82230 0.77056 0.79031 1.19897 1.20981 1.19957 1.45972 1.55288 1.30489 1.04893 1.17265 0.80266 0.82847 0.81994 1.90732 1.35920 1.27860 1.86483 1.21576 1.06286 1.01252 0.94906 1.22777 1.03109 1.02000 0.90544 1.23948 0.97990 0.92380 0.96473 1.83796 1.57437 1.49489 1.16175 1.24485 0.97350 0.97501 0.85340 1.22547 1.01178 0.96913 0.96031 1.23085 0.99125 1.02805 0.96053 1.22964 1.04020 0.91556 1.03529 0.91337 0.92462 0.90157 0.92977 0.90279 0.83601 0.89632 0.94035 0.77461 0.91844 0.76628 0.82385 0.77533 0.77238 0.85144 0.88248 0.88673 0.88723 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 7.06 37.16 0.26 -1.49 16 2 C 0.22 2.44 0.65 -131.82 -0.09 2.35 16 3 C 0.05 0.66 4.41 -3.83 -0.02 0.64 16 4 N -0.66 -11.11 5.32 -115.06 -0.61 -11.72 16 5 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 6 C 0.44 10.76 7.82 -10.99 -0.09 10.68 16 7 O -0.58 -16.00 15.78 5.54 0.09 -15.92 16 8 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 9 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 10 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 13 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 N -0.71 -7.72 4.29 -48.68 -0.21 -7.93 16 18 C 0.59 7.69 7.22 -12.54 -0.09 7.60 16 19 O -0.53 -8.55 13.21 5.27 0.07 -8.48 16 20 C -0.24 -2.75 6.31 -103.28 -0.65 -3.40 16 21 C -0.16 -1.79 11.01 -37.46 -0.41 -2.20 16 22 C -0.04 -0.37 12.03 29.30 0.35 -0.01 16 23 O -0.17 -1.70 10.52 7.65 0.08 -1.61 16 24 C 0.02 0.22 11.61 30.08 0.35 0.57 16 25 C -0.15 -1.55 5.01 -90.62 -0.45 -2.00 16 26 C -0.17 -1.53 9.62 -26.73 -0.26 -1.79 16 27 C -0.18 -1.52 9.72 -26.73 -0.26 -1.78 16 28 H 0.07 0.64 6.81 -51.93 -0.35 0.29 16 29 H 0.06 0.54 7.00 -51.93 -0.36 0.18 16 30 H 0.08 1.02 6.12 -51.93 -0.32 0.70 16 31 H 0.05 0.83 6.22 -51.93 -0.32 0.51 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.35 6.16 7.74 -39.29 -0.30 5.86 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.40 3.44 7.37 -40.82 -0.30 3.14 16 39 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.21 1.17 7.48 -52.48 -0.39 0.77 16 42 H 0.13 1.70 7.53 -51.93 -0.39 1.31 16 43 H 0.10 0.81 5.88 -51.93 -0.31 0.50 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.70 7.39 -51.93 -0.38 0.32 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -34.21 381.87 -7.03 -41.25 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -6.23 Total: 19.44 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.62 Total: 1.94 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.15 Total: -58.66 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: 0.24 Total: -26.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.21 -7.03 -41.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732239886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.124 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds