Wall clock time and date at job start Tue Mar 31 2020 20:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47202 * 2 1 4 4 C 1.36344 * 125.63584 * 89.97526 * 3 2 1 5 5 C 1.34849 * 108.21482 * 180.02562 * 4 3 2 6 6 C 1.40886 * 107.42052 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.29173 * 179.97438 * 6 5 4 8 8 N 1.46892 * 109.47202 * 90.02273 * 7 6 5 9 9 C 1.46904 * 111.00470 * 66.04734 * 8 7 6 10 10 C 1.46906 * 110.99932 * 189.99855 * 8 7 6 11 11 N 1.46505 * 109.47015 * 169.99961 * 10 8 7 12 12 N 1.40166 * 126.14366 * 90.02669 * 11 10 8 13 13 C 1.32244 * 107.75396 * 179.97438 * 12 11 10 14 14 C 1.40124 * 125.92232 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99675 * 179.97438 * 14 13 12 16 16 C 1.40035 * 119.99901 * 359.97438 * 14 13 12 17 17 N 1.30798 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47355 * 120.00090 * 18 16 14 21 21 H 1.48501 * 109.47168 * 239.99896 * 18 16 14 22 22 N 1.38502 * 108.14945 * 0.02562 * 13 12 11 23 23 C 1.46495 * 125.83206 * 180.02562 * 22 13 12 24 24 C 1.34730 * 108.32675 * 359.97438 * 22 13 12 25 25 S 1.71200 * 125.96777 * 180.02562 * 24 22 13 26 26 C 1.34848 * 107.41740 * 0.22767 * 6 5 4 27 27 H 1.08997 * 109.46986 * 59.99915 * 1 2 3 28 28 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46755 * 300.00123 * 1 2 3 30 30 H 1.08994 * 109.47318 * 239.99845 * 2 1 3 31 31 H 1.09001 * 109.47440 * 119.99960 * 2 1 3 32 32 H 1.07994 * 125.88942 * 359.97438 * 4 3 2 33 33 H 1.08000 * 126.28856 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.46926 * 330.01747 * 7 6 5 35 35 H 1.09004 * 109.46630 * 210.02331 * 7 6 5 36 36 H 1.08993 * 109.47382 * 183.95319 * 9 8 7 37 37 H 1.08998 * 109.46480 * 303.95449 * 9 8 7 38 38 H 1.09000 * 109.47065 * 63.95089 * 9 8 7 39 39 H 1.08999 * 109.46954 * 50.00369 * 10 8 7 40 40 H 1.08996 * 109.47089 * 289.99650 * 10 8 7 41 41 H 0.97003 * 120.00215 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.47841 * 89.99712 * 23 22 13 43 43 H 1.09005 * 109.46566 * 209.99516 * 23 22 13 44 44 H 1.09001 * 109.47319 * 329.99447 * 23 22 13 45 45 H 1.08007 * 125.89110 * 179.74850 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2827 2.1303 1.1081 5 6 2.7112 3.3435 0.7044 6 6 2.7120 3.3432 -0.7045 7 6 3.1164 4.4886 -1.5965 8 7 4.5538 4.4001 -1.8859 9 6 4.8567 3.2079 -2.6891 10 6 5.0328 5.6189 -2.5516 11 7 6.4966 5.6004 -2.6097 12 7 7.2762 5.0625 -3.6429 13 6 8.5471 5.2415 -3.3243 14 6 9.6507 4.8468 -4.0922 15 1 10.6523 5.0424 -3.7386 16 6 9.4549 4.1988 -5.3181 17 7 8.2419 3.9615 -5.7460 18 14 10.9261 3.6720 -6.3415 19 1 12.1786 4.0531 -5.6406 20 1 10.8940 2.1998 -6.5334 21 1 10.8753 4.3448 -7.6643 22 7 8.5981 5.8869 -2.0998 23 6 9.8165 6.2748 -1.3850 24 6 7.3356 6.0979 -1.6793 25 16 6.8772 6.8642 -0.2186 26 6 2.2791 2.1316 -1.1081 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.1679 1.8080 2.1324 33 1 3.0014 4.1643 1.3436 34 1 2.9042 5.4325 -1.0944 35 1 2.5541 4.4388 -2.5290 36 1 5.9346 3.1288 -2.8296 37 1 4.4913 2.3200 -2.1733 38 1 4.3688 3.2906 -3.6603 39 1 4.7025 6.4931 -1.9905 40 1 4.6296 5.6628 -3.5633 41 1 8.1063 3.5130 -6.5954 42 1 10.1103 7.2802 -1.6865 43 1 9.6287 6.2578 -0.3113 44 1 10.6170 5.5751 -1.6250 45 1 2.1609 1.8104 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794643825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:04 Heat of formation + Delta-G solvation = 141.881018 kcal Electronic energy + Delta-G solvation = -26583.557571 eV Core-core repulsion = 22958.301882 eV Total energy + Delta-G solvation = -3625.255689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.10586 -40.76353 -37.18383 -34.54461 -34.03060 -33.56581 -30.82713 -29.84106 -28.88858 -27.79051 -26.79714 -26.42984 -25.06036 -23.36187 -22.25218 -20.98320 -20.75265 -19.99696 -19.29365 -17.68414 -17.05232 -16.54634 -15.80942 -15.63681 -15.14336 -14.92767 -14.80756 -14.61387 -14.48807 -14.19706 -13.59104 -13.45582 -13.39695 -12.81339 -12.50943 -12.36757 -12.19620 -12.14776 -12.09089 -11.77023 -11.73392 -11.54437 -11.50081 -11.45207 -11.12938 -11.00327 -10.92840 -10.54020 -10.42694 -10.04012 -9.47933 -9.16382 -8.84245 -8.33467 -8.00401 -7.80479 -7.02806 -6.64815 -6.54118 -5.10524 2.32287 2.47490 2.70975 2.77683 2.91941 2.96652 2.98308 3.16606 3.53818 3.56589 3.66619 4.18950 4.44089 4.63226 4.73297 4.87560 4.88560 5.05201 5.22598 5.25867 5.31805 5.34930 5.48895 5.56028 5.64822 5.71513 5.72760 5.86426 5.91824 5.99607 6.04903 6.14691 6.16484 6.33048 6.39243 6.63377 6.65975 6.68467 6.83626 7.07290 7.17186 7.33439 7.35235 7.43902 7.52076 7.70092 7.88028 8.28282 8.38973 9.21234 9.94451 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.003207 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.285580 B = 8728.318196 C =10237.302009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.451 5.451 4 C -0.026 4.026 5 C -0.170 4.170 6 C -0.147 4.147 7 C 0.136 3.864 8 N -0.541 5.541 9 C 0.032 3.968 10 C 0.327 3.673 11 N -0.376 5.376 12 N -0.343 5.343 13 C 0.375 3.625 14 C -0.437 4.437 15 H 0.097 0.903 16 C 0.077 3.923 17 N -0.739 5.739 18 Si 0.927 3.073 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.271 1.271 22 N -0.518 5.518 23 C 0.101 3.899 24 C 0.481 3.519 25 S -0.706 6.706 26 C -0.012 4.012 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.284 0.716 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 -8.211 3.058 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.128 5.128 4 C -0.154 4.154 5 C -0.195 4.195 6 C -0.154 4.154 7 C 0.008 3.992 8 N -0.267 5.267 9 C -0.116 4.116 10 C 0.115 3.885 11 N -0.162 5.162 12 N -0.174 5.174 13 C 0.125 3.875 14 C -0.479 4.479 15 H 0.115 0.885 16 C -0.149 4.149 17 N -0.363 5.363 18 Si 0.751 3.249 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.196 1.196 22 N -0.220 5.220 23 C -0.042 4.042 24 C 0.112 3.888 25 S -0.582 6.582 26 C -0.142 4.142 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.516 -8.631 3.464 14.039 hybrid contribution 1.032 -0.456 -1.466 1.850 sum -9.484 -9.087 1.998 13.286 Atomic orbital electron populations 1.22173 0.94708 1.02623 1.03157 1.21746 0.95161 0.81001 1.04013 1.44024 1.51425 1.11222 1.06117 1.21711 1.09740 0.92801 0.91197 1.20828 1.06592 0.97477 0.94600 1.19200 1.06974 0.95089 0.94162 1.20223 0.86008 0.96805 0.96155 1.61763 1.15486 1.02548 1.46876 1.22349 1.02965 0.92320 0.93926 1.21672 0.74547 0.94173 0.98064 1.49110 1.06378 1.45305 1.15419 1.79323 0.98190 1.32188 1.07729 1.21282 0.94117 0.90277 0.81827 1.18378 0.91286 1.35748 1.02491 0.88511 1.25823 0.97627 0.94098 0.97383 1.69888 1.21707 1.26464 1.18250 0.85930 0.80643 0.78965 0.79390 1.18191 1.19568 1.19562 1.45968 1.05695 1.50813 1.19475 1.21732 0.83848 1.00644 0.97985 1.22858 0.83462 0.90226 0.92229 1.92676 1.87395 1.62947 1.15165 1.21554 1.09073 0.92416 0.91130 0.91906 0.91066 0.91914 0.89587 0.89557 0.82682 0.84600 0.89901 0.94771 0.90457 0.91977 0.96099 0.87327 0.92043 0.90543 0.91605 0.89221 0.89902 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.10 0.80 6.81 -4.04 -0.03 0.78 16 3 N -0.45 -5.24 2.75 -117.13 -0.32 -5.57 16 4 C -0.03 -0.33 11.43 -16.75 -0.19 -0.52 16 5 C -0.17 -2.54 10.81 -39.78 -0.43 -2.97 16 6 C -0.15 -2.21 5.02 -104.82 -0.53 -2.73 16 7 C 0.14 2.10 5.46 -4.98 -0.03 2.07 16 8 N -0.54 -10.17 4.89 -248.30 -1.21 -11.39 16 9 C 0.03 0.61 9.20 60.07 0.55 1.16 16 10 C 0.33 6.57 5.91 -63.30 -0.37 6.20 16 11 N -0.38 -8.94 3.34 -65.05 -0.22 -9.16 16 12 N -0.34 -8.76 9.81 31.21 0.31 -8.45 16 13 C 0.37 9.34 7.50 -155.27 -1.16 8.18 16 14 C -0.44 -10.26 8.98 -38.20 -0.34 -10.61 16 15 H 0.10 2.06 7.11 -52.49 -0.37 1.68 16 16 C 0.08 1.73 5.50 -17.32 -0.10 1.64 16 17 N -0.74 -17.73 11.90 55.55 0.66 -17.07 16 18 Si 0.93 16.67 29.56 -169.99 -5.02 11.64 16 19 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 22 N -0.52 -12.09 3.17 -124.66 -0.39 -12.49 16 23 C 0.10 1.87 10.65 59.84 0.64 2.51 16 24 C 0.48 11.84 7.84 -86.94 -0.68 11.16 16 25 S -0.71 -17.98 29.50 -107.50 -3.17 -21.15 16 26 C -0.01 -0.15 9.90 -16.75 -0.17 -0.32 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.08 1.76 6.85 -51.93 -0.36 1.40 16 37 H 0.06 1.08 6.12 -51.93 -0.32 0.77 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 2.15 7.43 -51.93 -0.39 1.76 16 40 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 41 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.66 7.62 -51.93 -0.40 1.26 16 44 H 0.08 1.35 7.32 -51.93 -0.38 0.97 16 45 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -31.82 387.56 -12.82 -44.64 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.83 Total: 7.32 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -2.46 Total: 15.83 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -1.18 Total: -64.13 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.02 Total: 11.64 kcal Atomic # 16 Polarization: -17.98 SS G_CDS: -3.17 Total: -21.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.82 -12.82 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794643825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.523 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds