Wall clock time and date at job start Tue Mar 31 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46986 * 2 1 4 4 C 1.46492 * 120.00145 * 269.99710 * 3 2 1 5 5 C 1.50697 * 109.47708 * 270.00290 * 4 3 2 6 6 H 1.08001 * 119.99248 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00284 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00374 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00130 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47514 * 89.99609 * 9 7 5 11 11 H 1.48495 * 109.47286 * 209.99999 * 9 7 5 12 12 H 1.48503 * 109.46820 * 329.99514 * 9 7 5 13 13 C 1.34781 * 119.99820 * 90.00519 * 3 2 1 14 14 O 1.21279 * 119.99842 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99917 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46614 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00478 * 66.04904 * 16 15 13 18 18 C 1.46909 * 110.99893 * 189.99996 * 16 15 13 19 19 C 1.50692 * 109.47405 * 164.92873 * 18 16 15 20 20 C 1.38256 * 119.99908 * 106.40930 * 19 18 16 21 21 C 1.38216 * 120.00121 * 180.28217 * 20 19 18 22 22 C 1.38258 * 119.99584 * 359.48732 * 21 20 19 23 23 C 1.38209 * 120.00194 * 0.49060 * 22 21 20 24 24 C 1.38216 * 120.00358 * 286.43701 * 19 18 16 25 25 N 1.48020 * 119.99611 * 359.96901 * 24 19 18 26 26 O 1.21800 * 119.99807 * 174.19431 * 25 24 19 27 27 O 1.21795 * 120.00189 * 354.20378 * 25 24 19 28 28 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46952 * 299.99925 * 1 2 3 30 30 H 1.09001 * 109.47538 * 59.99641 * 1 2 3 31 31 H 1.09000 * 109.46952 * 240.00075 * 2 1 3 32 32 H 1.08998 * 109.47246 * 119.99926 * 2 1 3 33 33 H 1.09005 * 109.46929 * 30.00631 * 4 3 2 34 34 H 1.09003 * 109.47242 * 149.99864 * 4 3 2 35 35 H 0.96993 * 120.00372 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47266 * 60.00368 * 15 13 3 37 37 H 1.09004 * 109.46946 * 299.99939 * 15 13 3 38 38 H 1.09003 * 109.47244 * 190.78881 * 17 16 15 39 39 H 1.09006 * 109.46646 * 310.78817 * 17 16 15 40 40 H 1.08999 * 109.46794 * 70.78607 * 17 16 15 41 41 H 1.09008 * 109.46717 * 44.92882 * 18 16 15 42 42 H 1.09002 * 109.46899 * 284.93738 * 18 16 15 43 43 H 1.07999 * 120.00033 * 359.97438 * 20 19 18 44 44 H 1.08001 * 120.00140 * 179.72831 * 21 20 19 45 45 H 1.08002 * 119.99712 * 180.26370 * 22 21 20 46 46 H 1.07999 * 120.00123 * 179.76969 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9134 2.0965 -3.4170 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2641 -4.1992 12 1 6.7735 1.9157 -2.2201 13 6 2.2430 2.0166 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4724 16 7 2.3092 2.2064 3.5889 17 6 1.3827 3.3457 3.6268 18 6 2.3052 1.4818 4.8668 19 6 2.9824 2.3189 5.9211 20 6 2.2293 2.9382 6.9013 21 6 2.8499 3.7107 7.8648 22 6 4.2248 3.8556 7.8547 23 6 4.9777 3.2362 6.8751 24 6 4.3564 2.4682 5.9078 25 7 5.1628 1.8052 4.8584 26 8 6.3591 2.0208 4.7825 27 8 4.6299 1.0441 4.0708 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6756 3.5178 -4.4430 36 1 2.6213 0.4186 2.5302 37 1 0.9433 1.0125 2.5299 38 1 1.7501 4.0895 4.3339 39 1 1.3135 3.7909 2.6343 40 1 0.3970 3.0020 3.9404 41 1 2.8407 0.5394 4.7518 42 1 1.2768 1.2810 5.1674 43 1 1.1556 2.8223 6.9112 44 1 2.2611 4.1980 8.6280 45 1 4.7101 4.4558 8.6101 46 1 6.0514 3.3524 6.8649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052589708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:14 Heat of formation + Delta-G solvation = -12.646465 kcal Electronic energy + Delta-G solvation = -29896.189177 eV Core-core repulsion = 25789.187051 eV Total energy + Delta-G solvation = -4107.002126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.13311 -40.94626 -40.36637 -38.09708 -37.36671 -36.72171 -34.90120 -33.20107 -32.75451 -31.58617 -30.08636 -28.53343 -28.26736 -27.08895 -25.12102 -24.30169 -23.62014 -23.40372 -22.32659 -19.91334 -19.82797 -19.48675 -18.61952 -18.42692 -17.99962 -17.36943 -16.98045 -16.88098 -16.42177 -16.33444 -15.82339 -15.64693 -15.37828 -15.00203 -14.61615 -14.38019 -14.20632 -14.02131 -13.77486 -13.58627 -13.31285 -13.22439 -13.12604 -13.05830 -12.74829 -12.65533 -12.59656 -12.47666 -12.38420 -12.35177 -12.14231 -12.11148 -11.79331 -11.69080 -11.59952 -10.63444 -10.51381 -10.45935 -10.15822 -9.40177 -9.20414 -8.21905 -6.35916 -1.10786 0.00609 0.41321 0.63157 1.34179 1.37827 1.49032 1.92895 2.21917 2.37360 2.48422 3.06600 3.08359 3.38120 3.47006 3.76420 3.85263 4.01413 4.09150 4.12447 4.16946 4.27836 4.33988 4.41222 4.47567 4.49088 4.60327 4.65592 4.71280 4.77880 4.94232 4.97377 5.01305 5.07993 5.08366 5.10219 5.17369 5.23400 5.35411 5.41668 5.60741 5.64745 5.86037 5.95874 6.09592 6.11869 6.62626 6.72798 6.88757 7.30656 7.59839 8.84690 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003426 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.589879 B = 8171.956465 C = 9312.965557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.267 3.733 5 C -0.541 4.541 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.963 3.037 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.498 3.502 14 O -0.584 6.584 15 C 0.062 3.938 16 N -0.542 5.542 17 C 0.029 3.971 18 C 0.081 3.919 19 C -0.024 4.024 20 C -0.111 4.111 21 C -0.052 4.052 22 C -0.112 4.112 23 C -0.075 4.075 24 C -0.053 4.053 25 N 0.035 4.965 26 O -0.236 6.236 27 O -0.141 6.141 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.022 0.978 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.175 0.825 44 H 0.185 0.815 45 H 0.179 0.821 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 -4.837 28.674 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.145 3.855 5 C -0.580 4.580 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.287 3.713 14 O -0.464 6.464 15 C -0.069 4.069 16 N -0.266 5.266 17 C -0.119 4.119 18 C -0.046 4.046 19 C -0.026 4.026 20 C -0.130 4.130 21 C -0.070 4.070 22 C -0.131 4.131 23 C -0.094 4.094 24 C -0.137 4.137 25 N 0.547 4.453 26 O -0.435 6.435 27 O -0.366 6.366 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.040 0.960 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.192 0.808 44 H 0.202 0.798 45 H 0.196 0.804 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.183 -3.624 28.919 30.273 hybrid contribution 0.862 -0.205 -1.447 1.696 sum -7.321 -3.829 27.473 28.688 Atomic orbital electron populations 1.22133 0.94318 1.03497 1.01617 1.21747 0.95435 0.81389 1.03820 1.48280 1.64290 1.15140 1.06130 1.18613 0.94943 0.91347 0.80554 1.21731 0.98112 1.31744 1.06368 0.93391 1.25808 1.02210 0.94522 0.96465 1.70042 1.37629 1.34311 1.14823 0.85482 0.79258 0.78408 0.78087 1.18399 1.20404 1.20417 1.21215 0.77134 0.86625 0.86370 1.90602 1.47232 1.20800 1.87796 1.21897 1.02392 0.95546 0.87016 1.61246 1.53616 1.09769 1.02016 1.22426 0.93784 0.93425 1.02224 1.21423 1.00813 0.96320 0.86016 1.19995 0.89813 0.96155 0.96666 1.21597 1.01962 0.96277 0.93131 1.22133 0.94688 0.93236 0.96926 1.21656 0.94507 0.98997 0.97893 1.21350 1.02684 0.93048 0.92298 1.21290 0.92111 1.06723 0.93569 1.43981 1.00966 0.99215 1.01126 1.94494 0.99460 1.69683 1.79856 1.94448 1.73584 1.31655 1.36883 0.88540 0.92047 0.94396 0.91228 0.88326 0.95992 0.98832 0.92440 0.86650 0.88962 0.91884 0.93337 0.92754 0.87944 0.89541 0.80751 0.79779 0.80410 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.10 3.13 5.93 86.38 0.51 3.65 16 3 N -0.61 -27.10 2.46 -826.16 -2.03 -29.13 16 4 C 0.27 15.18 5.16 85.63 0.44 15.62 16 5 C -0.54 -33.27 9.39 25.60 0.24 -33.03 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -58.52 13.29 21.44 0.28 -58.24 16 9 Si 0.96 47.99 29.54 68.60 2.03 50.02 16 10 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 13 C 0.50 22.06 7.30 87.66 0.64 22.70 16 14 O -0.58 -32.34 13.98 -3.03 -0.04 -32.38 16 15 C 0.06 1.87 3.75 85.56 0.32 2.19 16 16 N -0.54 -15.98 3.47 -931.60 -3.24 -19.21 16 17 C 0.03 0.80 9.02 127.69 1.15 1.95 16 18 C 0.08 1.65 4.13 85.55 0.35 2.01 16 19 C -0.02 -0.47 4.64 -19.87 -0.09 -0.56 16 20 C -0.11 -1.14 9.53 22.27 0.21 -0.93 16 21 C -0.05 -0.33 10.05 22.27 0.22 -0.11 16 22 C -0.11 -1.07 10.05 22.27 0.22 -0.85 16 23 C -0.07 -1.40 9.56 22.27 0.21 -1.19 16 24 C -0.05 -1.35 6.83 36.37 0.25 -1.10 16 25 N 0.03 1.20 4.45 -46.46 -0.21 0.99 16 26 O -0.24 -9.06 18.46 18.89 0.35 -8.71 16 27 O -0.14 -5.17 14.03 18.89 0.27 -4.91 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 32 H 0.10 2.48 6.44 -2.39 -0.02 2.46 16 33 H 0.02 1.26 8.07 -2.38 -0.02 1.24 16 34 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 35 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.12 3.27 6.73 -2.39 -0.02 3.26 16 37 H 0.09 2.07 7.16 -2.38 -0.02 2.06 16 38 H 0.06 1.63 7.54 -2.39 -0.02 1.61 16 39 H 0.05 1.79 5.78 -2.38 -0.01 1.78 16 40 H 0.05 1.07 7.98 -2.39 -0.02 1.05 16 41 H 0.10 2.26 5.88 -2.38 -0.01 2.24 16 42 H 0.09 1.10 7.75 -2.39 -0.02 1.08 16 43 H 0.18 0.69 7.99 -2.91 -0.02 0.66 16 44 H 0.18 -0.33 8.06 -2.91 -0.02 -0.36 16 45 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 46 H 0.15 2.74 7.62 -2.91 -0.02 2.72 16 Total: -1.00 -90.92 382.21 4.29 -86.63 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.99 Total: 6.77 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.89 Total: 8.17 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -5.19 Total: -105.59 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: 0.57 Total: -46.00 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -90.92 4.29 -86.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052589708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.985 kcal (2) G-P(sol) polarization free energy of solvation -90.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds