Wall clock time and date at job start Tue Mar 31 2020 22:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35733 * 117.00211 * 179.97438 * 3 2 1 5 5 C 1.41845 * 126.78613 * 180.02562 * 4 3 2 6 6 C 1.36658 * 103.81530 * 180.02562 * 5 4 3 7 7 C 1.47544 * 126.88655 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00403 * 179.97438 * 7 6 5 10 10 C 1.46491 * 119.99900 * 179.97438 * 9 7 6 11 11 C 1.53583 * 112.24381 * 297.64241 * 10 9 7 12 12 C 1.55461 * 106.05946 * 238.16517 * 11 10 9 13 13 C 1.54761 * 104.36406 * 335.36191 * 12 11 10 14 14 C 1.54774 * 103.21427 * 37.67639 * 13 12 11 15 15 H 1.08995 * 112.61405 * 85.33853 * 14 13 12 16 16 N 1.46977 * 108.68722 * 209.80019 * 14 13 12 17 17 C 1.36935 * 125.58080 * 294.14019 * 16 14 13 18 18 H 1.07994 * 120.00225 * 359.97196 * 17 16 14 19 19 C 1.38815 * 119.99767 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99824 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47308 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47115 * 120.00351 * 21 19 17 24 24 H 1.48500 * 109.47084 * 240.00119 * 21 19 17 25 25 C 1.47369 * 108.83895 * 114.13705 * 16 14 13 26 26 C 1.54866 * 104.82371 * 335.30790 * 25 16 14 27 27 O 1.34666 * 106.23648 * 359.97438 * 6 5 4 28 28 N 1.20875 * 111.63445 * 359.71002 * 27 6 5 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 33 33 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 34 34 H 1.08004 * 128.09225 * 0.02562 * 5 4 3 35 35 H 0.97006 * 119.99723 * 359.97438 * 9 7 6 36 36 H 1.09006 * 110.01671 * 358.14321 * 11 10 9 37 37 H 1.09001 * 110.01948 * 119.52937 * 11 10 9 38 38 H 1.09000 * 110.50896 * 216.56486 * 12 11 10 39 39 H 1.09009 * 110.39431 * 94.09734 * 12 11 10 40 40 H 1.09004 * 110.66723 * 279.24274 * 13 12 11 41 41 H 1.08998 * 110.66843 * 156.10748 * 13 12 11 42 42 H 0.96990 * 120.00035 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.37320 * 216.46927 * 25 16 14 44 44 H 1.09006 * 110.36940 * 94.13663 * 25 16 14 45 45 H 1.09004 * 110.96404 * 278.95534 * 26 25 16 46 46 H 1.08998 * 110.97286 * 155.19113 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3520 1.5252 0.0005 5 6 4.0452 2.7627 0.0012 6 6 5.3625 2.3988 0.0009 7 6 6.5303 3.3005 0.0019 8 8 6.3679 4.5054 0.0025 9 7 7.7771 2.7886 0.0020 10 6 8.9365 3.6840 0.0024 11 6 8.9938 4.5615 -1.2567 12 6 10.3590 4.2537 -1.9337 13 6 11.2551 3.7474 -0.7780 14 6 10.2798 2.9124 0.0863 15 1 10.1818 1.8855 -0.2659 16 7 10.7239 2.9696 1.4861 17 6 11.8889 2.4411 1.9747 18 1 12.5698 1.9293 1.3109 19 6 12.1946 2.5633 3.3232 20 7 11.3644 3.1866 4.1324 21 14 13.7834 1.8417 3.9898 22 1 14.5362 1.1965 2.8843 23 1 14.6079 2.9245 4.5837 24 1 13.4693 0.8308 5.0314 25 6 9.7103 3.6890 2.2779 26 6 8.9777 4.5931 1.2561 27 8 5.3812 1.0523 0.0008 28 7 4.2639 0.5911 0.0066 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.6293 3.7594 0.0017 35 1 7.9066 1.8272 0.0019 36 1 8.1659 4.3147 -1.9215 37 1 8.9491 5.6148 -0.9798 38 1 10.7791 5.1577 -2.3745 39 1 10.2409 3.4798 -2.6922 40 1 11.6554 4.5848 -0.2064 41 1 12.0611 3.1219 -1.1618 42 1 11.5779 3.2716 5.0747 43 1 10.1894 4.2957 3.0462 44 1 9.0121 2.9846 2.7302 45 1 9.5474 5.5017 1.0605 46 1 7.9707 4.8319 1.5981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991881979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:35 Heat of formation + Delta-G solvation = 24.880107 kcal Electronic energy + Delta-G solvation = -29561.386627 eV Core-core repulsion = 25456.011775 eV Total energy + Delta-G solvation = -4105.374852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.11609 -40.29815 -39.25486 -38.22091 -34.35853 -33.82234 -33.50066 -32.13788 -31.50866 -31.29140 -29.76785 -26.74718 -26.36197 -24.62340 -23.86666 -23.57505 -23.16133 -21.23510 -20.31116 -20.01686 -18.95030 -18.60171 -18.11105 -17.12172 -17.06443 -16.24031 -16.21187 -15.69028 -15.02264 -14.98748 -14.71506 -14.47928 -14.01773 -13.76887 -13.54060 -13.42211 -13.23638 -13.05047 -12.84677 -12.25616 -12.22980 -11.90909 -11.79901 -11.50146 -11.49047 -11.21598 -11.01424 -10.86418 -10.73423 -10.58314 -10.36981 -10.13286 -10.01959 -9.97754 -9.90945 -9.72475 -9.55215 -9.52812 -8.73858 -8.66405 -6.87693 -5.66155 -3.09525 0.66265 1.92564 2.34876 2.51843 3.01718 3.34777 3.38793 3.44411 3.46745 3.90083 4.45719 4.48222 4.52257 4.62785 4.71439 4.85605 4.93511 5.01135 5.08841 5.24167 5.27698 5.36060 5.49828 5.50393 5.60704 5.61155 5.73942 5.80451 5.93546 6.01549 6.07751 6.13980 6.31333 6.37019 6.48029 6.54910 6.70059 6.71021 6.73922 6.88501 7.04279 7.46635 7.52354 7.63583 7.85486 7.89451 8.11536 8.34912 9.19784 9.80691 10.44024 11.36535 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002855 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.123337 B = 9806.030469 C =10870.578931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.206 3.794 5 C -0.160 4.160 6 C -0.049 4.049 7 C 0.602 3.398 8 O -0.505 6.505 9 N -0.685 5.685 10 C 0.157 3.843 11 C -0.113 4.113 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.163 3.837 15 H 0.049 0.951 16 N -0.596 5.596 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.151 3.849 26 C -0.144 4.144 27 O 0.117 5.883 28 N -0.392 5.392 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.190 0.810 35 H 0.407 0.593 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.251 0.749 43 H 0.109 0.891 44 H 0.010 0.990 45 H 0.071 0.929 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.874 -2.623 -11.174 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.009 3.991 5 C -0.182 4.182 6 C -0.115 4.115 7 C 0.385 3.615 8 O -0.381 6.381 9 N -0.334 5.334 10 C 0.071 3.929 11 C -0.151 4.151 12 C -0.162 4.162 13 C -0.168 4.168 14 C 0.054 3.946 15 H 0.067 0.933 16 N -0.320 5.320 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.026 3.974 26 C -0.183 4.183 27 O 0.052 5.948 28 N -0.116 5.116 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.207 0.793 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.028 0.972 45 H 0.090 0.910 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.148 -2.909 -10.927 19.714 hybrid contribution 0.496 -0.447 0.453 0.807 sum -15.653 -3.357 -10.474 19.131 Atomic orbital electron populations 1.21797 0.92125 1.03231 1.03698 1.22844 0.95917 0.80536 1.02536 1.86214 1.13002 1.30286 1.89346 1.21832 0.85821 0.90522 1.00971 1.22146 0.90077 0.99215 1.06799 1.24275 0.96804 0.84216 1.06196 1.16448 0.80975 0.86112 0.78012 1.90869 1.84749 1.12568 1.49901 1.45845 1.04444 1.11006 1.72089 1.21833 0.83997 0.90568 0.96477 1.22521 0.97222 0.99830 0.95572 1.22571 0.95340 1.00383 0.97941 1.22923 0.97647 1.00429 0.95823 1.21797 0.89335 0.95550 0.87882 0.93315 1.44539 1.20664 1.65308 1.01501 1.19070 0.94863 1.28643 0.92196 0.90395 1.24786 0.98674 1.01066 0.96069 1.69802 1.35936 1.47182 1.03889 0.86024 0.82652 0.78215 0.78740 1.20543 1.21799 1.21850 1.21998 0.89266 0.93024 0.93088 1.23380 1.01057 0.98211 0.95634 1.84968 1.22782 1.18723 1.68370 1.74001 0.90446 1.22183 1.24935 0.89930 0.91348 0.91285 0.91451 0.91531 0.79322 0.75735 0.92052 0.90857 0.92125 0.92253 0.90577 0.92159 0.93781 0.87303 0.97208 0.90991 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.49 6.38 37.16 0.24 0.73 16 3 O -0.28 -3.22 10.21 -18.91 -0.19 -3.42 16 4 C 0.21 2.63 8.00 -16.72 -0.13 2.49 16 5 C -0.16 -1.98 10.97 -38.77 -0.43 -2.41 16 6 C -0.05 -0.65 7.29 -36.36 -0.26 -0.92 16 7 C 0.60 9.11 7.01 -12.47 -0.09 9.02 16 8 O -0.51 -8.69 14.72 5.29 0.08 -8.62 16 9 N -0.68 -10.41 5.22 -46.38 -0.24 -10.65 16 10 C 0.16 2.66 0.74 -129.38 -0.10 2.56 16 11 C -0.11 -1.69 5.41 -25.12 -0.14 -1.83 16 12 C -0.12 -1.73 6.87 -24.50 -0.17 -1.90 16 13 C -0.13 -2.19 6.22 -24.87 -0.15 -2.35 16 14 C 0.16 3.09 3.67 -65.60 -0.24 2.85 16 15 H 0.05 0.91 7.96 -51.93 -0.41 0.49 16 16 N -0.60 -14.20 3.03 -161.14 -0.49 -14.68 16 17 C -0.22 -5.78 10.01 -15.06 -0.15 -5.93 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.21 10.07 55.49 0.56 -25.65 16 21 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 C 0.15 3.57 5.90 -2.58 -0.02 3.56 16 26 C -0.14 -2.80 5.71 -24.74 -0.14 -2.94 16 27 O 0.12 1.58 11.03 15.49 0.17 1.75 16 28 N -0.39 -5.30 11.50 30.47 0.35 -4.95 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.19 2.01 8.06 -52.48 -0.42 1.58 16 35 H 0.41 5.63 8.31 -40.82 -0.34 5.29 16 36 H 0.06 0.89 7.58 -51.93 -0.39 0.49 16 37 H 0.07 1.13 7.37 -51.93 -0.38 0.75 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.11 2.94 5.82 -51.93 -0.30 2.64 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 1.39 7.63 -51.93 -0.40 0.99 16 46 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -29.97 373.35 -7.41 -37.38 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.76 Total: 4.58 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.49 Total: 2.05 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.18 Total: -55.93 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.06 Total: -10.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.97 -7.41 -37.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991881979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.262 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds