Wall clock time and date at job start Tue Mar 31 2020 22:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35733 * 117.00211 * 179.97438 * 3 2 1 5 5 C 1.41845 * 126.78613 * 180.02562 * 4 3 2 6 6 C 1.36658 * 103.81530 * 180.02562 * 5 4 3 7 7 C 1.47544 * 126.88655 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00403 * 179.97438 * 7 6 5 10 10 C 1.46491 * 119.99900 * 179.97438 * 9 7 6 11 11 C 1.53583 * 112.24381 * 297.64241 * 10 9 7 12 12 C 1.55461 * 106.05946 * 238.16517 * 11 10 9 13 13 C 1.54761 * 104.36406 * 335.36191 * 12 11 10 14 14 C 1.54774 * 103.21427 * 37.67639 * 13 12 11 15 15 H 1.08995 * 112.61405 * 85.33853 * 14 13 12 16 16 N 1.46977 * 108.68722 * 209.80019 * 14 13 12 17 17 C 1.36935 * 125.58080 * 294.14019 * 16 14 13 18 18 H 1.07994 * 120.00225 * 359.97196 * 17 16 14 19 19 C 1.38815 * 119.99767 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99824 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47308 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47115 * 120.00351 * 21 19 17 24 24 H 1.48500 * 109.47084 * 240.00119 * 21 19 17 25 25 C 1.47369 * 108.83895 * 114.13705 * 16 14 13 26 26 C 1.54866 * 104.82371 * 335.30790 * 25 16 14 27 27 O 1.34666 * 106.23648 * 359.97438 * 6 5 4 28 28 N 1.20875 * 111.63445 * 359.71002 * 27 6 5 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 33 33 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 34 34 H 1.08004 * 128.09225 * 0.02562 * 5 4 3 35 35 H 0.97006 * 119.99723 * 359.97438 * 9 7 6 36 36 H 1.09006 * 110.01671 * 358.14321 * 11 10 9 37 37 H 1.09001 * 110.01948 * 119.52937 * 11 10 9 38 38 H 1.09000 * 110.50896 * 216.56486 * 12 11 10 39 39 H 1.09009 * 110.39431 * 94.09734 * 12 11 10 40 40 H 1.09004 * 110.66723 * 279.24274 * 13 12 11 41 41 H 1.08998 * 110.66843 * 156.10748 * 13 12 11 42 42 H 0.96990 * 120.00035 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.37320 * 216.46927 * 25 16 14 44 44 H 1.09006 * 110.36940 * 94.13663 * 25 16 14 45 45 H 1.09004 * 110.96404 * 278.95534 * 26 25 16 46 46 H 1.08998 * 110.97286 * 155.19113 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3520 1.5252 0.0005 5 6 4.0452 2.7627 0.0012 6 6 5.3625 2.3988 0.0009 7 6 6.5303 3.3005 0.0019 8 8 6.3679 4.5054 0.0025 9 7 7.7771 2.7886 0.0020 10 6 8.9365 3.6840 0.0024 11 6 8.9938 4.5615 -1.2567 12 6 10.3590 4.2537 -1.9337 13 6 11.2551 3.7474 -0.7780 14 6 10.2798 2.9124 0.0863 15 1 10.1818 1.8855 -0.2659 16 7 10.7239 2.9696 1.4861 17 6 11.8889 2.4411 1.9747 18 1 12.5698 1.9293 1.3109 19 6 12.1946 2.5633 3.3232 20 7 11.3644 3.1866 4.1324 21 14 13.7834 1.8417 3.9898 22 1 14.5362 1.1965 2.8843 23 1 14.6079 2.9245 4.5837 24 1 13.4693 0.8308 5.0314 25 6 9.7103 3.6890 2.2779 26 6 8.9777 4.5931 1.2561 27 8 5.3812 1.0523 0.0008 28 7 4.2639 0.5911 0.0066 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.6293 3.7594 0.0017 35 1 7.9066 1.8272 0.0019 36 1 8.1659 4.3147 -1.9215 37 1 8.9491 5.6148 -0.9798 38 1 10.7791 5.1577 -2.3745 39 1 10.2409 3.4798 -2.6922 40 1 11.6554 4.5848 -0.2064 41 1 12.0611 3.1219 -1.1618 42 1 11.5779 3.2716 5.0747 43 1 10.1894 4.2957 3.0462 44 1 9.0121 2.9846 2.7302 45 1 9.5474 5.5017 1.0605 46 1 7.9707 4.8319 1.5981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991881979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:29 Heat of formation + Delta-G solvation = 4.728379 kcal Electronic energy + Delta-G solvation = -29562.260471 eV Core-core repulsion = 25456.011775 eV Total energy + Delta-G solvation = -4106.248696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 5.93 seconds Orbital eigenvalues (eV) -46.14092 -41.66883 -40.11595 -39.61913 -36.05251 -35.00148 -34.56342 -33.41972 -32.98221 -32.15519 -31.38699 -28.37692 -27.78689 -25.74310 -25.56463 -24.55641 -24.08699 -22.51176 -21.69784 -21.37786 -20.30792 -19.89209 -19.13013 -18.88112 -18.04828 -17.54913 -17.02506 -16.93399 -16.82059 -16.15097 -16.06632 -15.64651 -15.48542 -15.03399 -14.84405 -14.65127 -14.45949 -14.09499 -13.89322 -13.55639 -13.50192 -13.20979 -12.99497 -12.91864 -12.80576 -12.64265 -12.41522 -12.27111 -12.14970 -11.97244 -11.88180 -11.72103 -11.66823 -11.47355 -11.22236 -11.17740 -11.02716 -10.70740 -10.48236 -10.09363 -8.83706 -7.71461 -5.15862 -0.41277 0.92322 1.39534 1.46939 1.49660 1.50041 1.59870 1.84007 2.21176 2.52900 2.92503 3.36295 3.38597 3.57040 3.64017 3.76638 3.91031 3.91468 3.96842 3.98570 4.07901 4.26045 4.39516 4.42659 4.50554 4.54267 4.61590 4.64821 4.78418 4.82915 4.85035 4.87493 4.97974 5.13557 5.14741 5.18611 5.26627 5.35922 5.48782 5.55986 5.61288 5.69214 5.84011 5.86257 6.26042 6.34465 6.82413 6.92798 7.14930 7.83309 8.46514 9.29982 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002855 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.123337 B = 9806.030469 C =10870.578931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.287 6.287 4 C 0.205 3.795 5 C -0.150 4.150 6 C -0.056 4.056 7 C 0.609 3.391 8 O -0.526 6.526 9 N -0.684 5.684 10 C 0.167 3.833 11 C -0.107 4.107 12 C -0.109 4.109 13 C -0.124 4.124 14 C 0.153 3.847 15 H 0.059 0.941 16 N -0.612 5.612 17 C -0.219 4.219 18 H 0.086 0.914 19 C -0.071 4.071 20 N -0.951 5.951 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.296 1.296 24 H -0.298 1.298 25 C 0.159 3.841 26 C -0.131 4.131 27 O 0.114 5.886 28 N -0.400 5.400 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.207 0.793 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.243 0.757 43 H 0.072 0.928 44 H -0.019 1.019 45 H 0.073 0.927 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 -3.160 -13.519 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.008 3.992 5 C -0.172 4.172 6 C -0.122 4.122 7 C 0.392 3.608 8 O -0.403 6.403 9 N -0.334 5.334 10 C 0.081 3.919 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.164 4.164 14 C 0.046 3.954 15 H 0.077 0.923 16 N -0.336 5.336 17 C -0.348 4.348 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.804 3.196 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.226 1.226 25 C 0.034 3.966 26 C -0.170 4.170 27 O 0.048 5.952 28 N -0.126 5.126 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.224 0.776 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.090 0.910 44 H -0.001 1.001 45 H 0.091 0.909 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.931 -3.466 -13.325 21.822 hybrid contribution 0.646 -0.335 1.180 1.386 sum -16.284 -3.801 -12.145 20.667 Atomic orbital electron populations 1.21827 0.89904 1.04695 1.03836 1.23127 0.97652 0.79304 1.02520 1.86237 1.12105 1.32014 1.89067 1.21972 0.86405 0.90428 1.00426 1.22409 0.89611 0.99949 1.05261 1.23950 0.96503 0.84239 1.07519 1.16482 0.81087 0.86000 0.77192 1.90858 1.85109 1.13488 1.50833 1.45777 1.04193 1.11207 1.72183 1.21661 0.83793 0.90165 0.96264 1.22481 0.98491 0.99063 0.94519 1.22510 0.93449 1.01875 0.96906 1.22779 0.97867 0.99307 0.96399 1.22078 0.90962 0.96723 0.85597 0.92290 1.44736 1.20096 1.65163 1.03655 1.19429 0.95577 1.27472 0.92345 0.89616 1.25568 1.01678 1.02345 0.96687 1.70059 1.37598 1.48961 1.03552 0.85048 0.79392 0.77060 0.78090 1.18806 1.22341 1.22580 1.21660 0.88847 0.92518 0.93559 1.23187 1.00153 0.97868 0.95833 1.84960 1.22878 1.18626 1.68708 1.73985 0.90620 1.22557 1.25406 0.87786 0.91019 0.91303 0.91741 0.91287 0.77615 0.74928 0.90813 0.91115 0.90161 0.90003 0.92972 0.91501 0.94685 0.90962 1.00079 0.90860 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 71.98 0.74 -0.70 16 2 C 0.05 0.77 6.38 71.98 0.46 1.23 16 3 O -0.29 -6.18 10.21 -90.57 -0.92 -7.11 16 4 C 0.20 4.97 8.00 85.78 0.69 5.66 16 5 C -0.15 -3.50 10.97 22.79 0.25 -3.26 16 6 C -0.06 -1.45 7.29 24.36 0.18 -1.27 16 7 C 0.61 17.75 7.01 86.70 0.61 18.35 16 8 O -0.53 -17.45 14.72 -3.97 -0.06 -17.50 16 9 N -0.68 -20.08 5.22 -418.92 -2.19 -22.26 16 10 C 0.17 5.49 0.74 5.19 0.00 5.49 16 11 C -0.11 -2.93 5.41 31.64 0.17 -2.76 16 12 C -0.11 -2.67 6.87 32.04 0.22 -2.45 16 13 C -0.12 -4.00 6.22 31.80 0.20 -3.80 16 14 C 0.15 5.66 3.67 46.24 0.17 5.83 16 15 H 0.06 2.09 7.96 -2.39 -0.02 2.07 16 16 N -0.61 -29.56 3.03 -663.72 -2.01 -31.57 16 17 C -0.22 -11.63 10.01 84.03 0.84 -10.79 16 18 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 20 N -0.95 -56.42 10.07 21.65 0.22 -56.20 16 21 Si 0.97 45.11 29.55 68.60 2.03 47.13 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 C 0.16 7.85 5.90 86.85 0.51 8.37 16 26 C -0.13 -5.16 5.71 31.89 0.18 -4.98 16 27 O 0.11 2.96 11.03 65.60 0.72 3.69 16 28 N -0.40 -10.45 11.50 -172.03 -1.98 -12.43 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.41 11.03 8.31 -92.70 -0.77 10.26 16 36 H 0.07 1.89 7.58 -2.38 -0.02 1.87 16 37 H 0.07 2.01 7.37 -2.39 -0.02 1.99 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.05 1.94 8.09 -2.39 -0.02 1.92 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.24 14.16 8.31 -92.72 -0.77 13.38 16 43 H 0.07 4.12 5.82 -2.39 -0.01 4.11 16 44 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 45 H 0.07 2.85 7.63 -2.38 -0.02 2.83 16 46 H 0.07 2.69 6.53 -2.39 -0.02 2.67 16 Total: -1.00 -65.86 373.35 1.73 -64.12 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.24 Total: 20.66 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.68 Total: 11.47 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -5.96 Total: -122.45 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.26 Total: -20.93 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.86 1.73 -64.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991881979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.853 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.93 seconds