Wall clock time and date at job start Tue Mar 31 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47208 * 2 1 4 4 C 1.35651 * 117.00240 * 180.02562 * 3 2 1 5 5 C 1.39339 * 120.53811 * 0.02562 * 4 3 2 6 6 C 1.38302 * 118.43883 * 179.97438 * 5 4 3 7 7 C 1.38773 * 119.44710 * 0.02562 * 6 5 4 8 8 N 1.31376 * 121.05998 * 359.71858 * 7 6 5 9 9 C 1.32858 * 121.70000 * 0.56770 * 8 7 6 10 10 C 1.47823 * 119.78365 * 179.70874 * 9 8 7 11 11 O 1.21558 * 120.00088 * 179.72844 * 10 9 8 12 12 N 1.34777 * 120.00279 * 359.72861 * 10 9 8 13 13 C 1.46496 * 120.00339 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46243 * 324.97729 * 13 12 10 15 15 C 1.53038 * 109.45966 * 84.93546 * 13 12 10 16 16 C 1.52764 * 109.38675 * 181.26093 * 15 13 12 17 17 N 1.46921 * 109.00826 * 305.58905 * 16 15 13 18 18 C 1.36937 * 120.63190 * 233.58080 * 17 16 15 19 19 H 1.07997 * 120.00342 * 151.87578 * 18 17 16 20 20 C 1.38808 * 119.99653 * 331.61098 * 18 17 16 21 21 N 1.31614 * 120.00299 * 343.01063 * 20 18 17 22 22 Si 1.86804 * 120.00113 * 163.02023 * 20 18 17 23 23 H 1.48499 * 109.47394 * 94.07396 * 22 20 18 24 24 H 1.48497 * 109.47180 * 214.07698 * 22 20 18 25 25 H 1.48507 * 109.46788 * 334.07632 * 22 20 18 26 26 C 1.46927 * 118.74117 * 53.30371 * 17 16 15 27 27 C 1.53045 * 109.46406 * 205.00093 * 13 12 10 28 28 H 1.08998 * 109.49738 * 298.56857 * 27 13 12 29 29 O 1.42898 * 109.49549 * 58.66199 * 27 13 12 30 30 H 1.09001 * 109.46842 * 60.00036 * 1 2 3 31 31 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46811 * 300.00082 * 1 2 3 33 33 H 1.08996 * 109.47409 * 240.00053 * 2 1 3 34 34 H 1.08998 * 109.47553 * 119.99805 * 2 1 3 35 35 H 1.08000 * 120.78550 * 0.02562 * 5 4 3 36 36 H 1.08002 * 120.27976 * 179.97438 * 6 5 4 37 37 H 1.07999 * 119.46646 * 179.97438 * 7 6 5 38 38 H 0.97005 * 120.00001 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.49687 * 301.33412 * 15 13 12 40 40 H 1.08997 * 109.50082 * 61.39852 * 15 13 12 41 41 H 1.08997 * 109.51493 * 185.70259 * 16 15 13 42 42 H 1.09000 * 109.42953 * 65.42203 * 16 15 13 43 43 H 0.97005 * 120.00588 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.58636 * 66.43169 * 26 17 16 45 45 H 1.09001 * 109.59060 * 186.85995 * 26 17 16 46 46 H 0.96703 * 114.00181 * 179.84012 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.2103 0.4281 -0.0016 6 6 5.5738 0.6594 -0.0027 7 6 6.0443 1.9649 -0.0021 8 7 5.2154 2.9842 -0.0061 9 6 3.8979 2.8126 0.0004 10 6 3.0041 3.9900 0.0020 11 8 1.7981 3.8375 0.0029 12 7 3.5262 5.2325 0.0025 13 6 2.6404 6.3993 0.0035 14 1 1.7503 6.1800 -0.5860 15 6 2.2314 6.7275 1.4412 16 6 1.2828 7.9250 1.4377 17 7 1.9206 9.0386 0.7223 18 6 2.0405 10.2689 1.3114 19 1 2.8524 10.9243 1.0327 20 6 1.1154 10.6759 2.2628 21 7 -0.0412 10.0559 2.3636 22 14 1.5117 12.1039 3.4001 23 1 0.9709 13.3609 2.8233 24 1 0.8951 11.8638 4.7295 25 1 2.9843 12.2221 3.5515 26 6 2.4329 8.8054 -0.6349 27 6 3.3735 7.5966 -0.6060 28 1 4.2501 7.8321 -0.0025 29 8 3.7820 7.2781 -1.9377 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8207 -0.5792 -0.0024 36 1 6.2668 -0.1690 -0.0031 37 1 7.1090 2.1460 -0.0025 38 1 4.4886 5.3542 0.0014 39 1 1.7300 5.8661 1.8825 40 1 3.1188 6.9706 2.0256 41 1 1.0702 8.2241 2.4641 42 1 0.3552 7.6513 0.9351 43 1 -0.6879 10.3405 3.0283 44 1 1.6010 8.6050 -1.3100 45 1 2.9789 9.6851 -0.9756 46 1 4.2517 7.9942 -2.3869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090857783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:33 Heat of formation + Delta-G solvation = -86.734123 kcal Electronic energy + Delta-G solvation = -29428.233793 eV Core-core repulsion = 25318.018985 eV Total energy + Delta-G solvation = -4110.214808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.98446 -40.69959 -39.37856 -39.13411 -36.99509 -35.74326 -33.94054 -33.28044 -33.04495 -31.76359 -30.93511 -30.12364 -27.22912 -25.88054 -25.00915 -23.99040 -23.47790 -23.14357 -21.61419 -21.23608 -19.53588 -19.00269 -18.58515 -18.11969 -17.92890 -17.27114 -17.06379 -16.68911 -16.34500 -16.02727 -15.72276 -15.54999 -15.34960 -15.03602 -14.85108 -14.67752 -14.43610 -14.28241 -13.88693 -13.63901 -13.54716 -13.50340 -13.29522 -13.24912 -12.98176 -12.71500 -12.39835 -12.29650 -12.11704 -12.08452 -11.88648 -11.85662 -11.44256 -11.23530 -11.05871 -10.82436 -10.60212 -10.55812 -10.04801 -9.48309 -8.76980 -7.90362 -5.38274 -0.35497 0.23518 1.48049 1.49913 1.60209 1.78208 2.04845 2.12878 2.49350 2.83864 3.09570 3.21917 3.28612 3.58435 3.61736 3.73326 3.85321 3.99711 4.00887 4.04508 4.13005 4.17045 4.20217 4.31572 4.36808 4.47787 4.52620 4.68110 4.76055 4.82861 4.88094 4.88551 4.94634 5.00035 5.01058 5.10607 5.20527 5.34843 5.45921 5.48940 5.58667 5.64402 6.25432 6.33426 6.48519 6.84034 6.88697 7.08938 7.25129 7.76946 8.30761 9.17480 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016303 B = 0.002822 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.095636 B = 9920.041614 C =10681.074248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.038 3.962 3 O -0.309 6.309 4 C 0.123 3.877 5 C -0.172 4.172 6 C -0.085 4.085 7 C 0.053 3.947 8 N -0.440 5.440 9 C 0.004 3.996 10 C 0.560 3.440 11 O -0.562 6.562 12 N -0.690 5.690 13 C 0.170 3.830 14 H 0.055 0.945 15 C -0.128 4.128 16 C 0.183 3.817 17 N -0.603 5.603 18 C -0.267 4.267 19 H 0.078 0.922 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.264 1.264 26 C 0.120 3.880 27 C 0.103 3.897 28 H 0.072 0.928 29 O -0.571 6.571 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.179 0.821 36 H 0.192 0.808 37 H 0.199 0.801 38 H 0.414 0.586 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.063 0.937 42 H -0.008 1.008 43 H 0.251 0.749 44 H 0.013 0.987 45 H 0.078 0.922 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.459 -24.108 -5.688 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.220 6.220 4 C 0.072 3.928 5 C -0.198 4.198 6 C -0.105 4.105 7 C -0.109 4.109 8 N -0.152 5.152 9 C -0.132 4.132 10 C 0.347 3.653 11 O -0.440 6.440 12 N -0.341 5.341 13 C 0.065 3.935 14 H 0.073 0.927 15 C -0.168 4.168 16 C 0.057 3.943 17 N -0.328 5.328 18 C -0.397 4.397 19 H 0.095 0.905 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.189 1.189 26 C -0.007 4.007 27 C 0.042 3.958 28 H 0.090 0.910 29 O -0.378 6.378 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.196 0.804 36 H 0.209 0.791 37 H 0.216 0.784 38 H 0.251 0.749 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.010 0.990 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.097 0.903 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 13.275 -23.704 -5.475 27.714 hybrid contribution -0.327 0.609 0.503 0.855 sum 12.948 -23.094 -4.972 26.939 Atomic orbital electron populations 1.21797 0.92444 1.04099 1.02494 1.23263 0.96731 0.80515 1.03154 1.86422 1.17741 1.31493 1.86371 1.20277 0.84677 0.94294 0.93540 1.22173 0.94386 0.98858 1.04403 1.22760 0.95258 0.99600 0.92840 1.23457 1.01017 0.88049 0.98424 1.67543 1.01128 1.37518 1.08969 1.20362 0.90928 0.90742 1.11179 1.18215 0.87214 0.83496 0.76393 1.90797 1.15671 1.86237 1.51344 1.45692 1.10943 1.04204 1.73212 1.20682 0.92782 0.84139 0.95877 0.92696 1.22252 1.00581 0.98478 0.95523 1.20417 0.91179 0.85281 0.97430 1.44228 1.68900 1.07777 1.11870 1.19575 1.06729 0.94021 1.19337 0.90485 1.25920 0.94379 1.01166 1.03201 1.70214 1.06684 1.44895 1.36419 0.85193 0.78207 0.78733 0.77860 1.21168 1.22092 1.18885 1.21683 0.95568 0.96612 0.86845 1.22308 0.96650 0.93186 0.83680 0.91027 1.86473 1.78919 1.45011 1.27418 0.92943 0.87120 0.93042 0.89702 0.89784 0.80387 0.79109 0.78381 0.74899 0.92733 0.91382 0.91845 0.99038 0.94007 0.96945 0.90319 0.75406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.04 0.63 5.48 71.98 0.39 1.03 16 3 O -0.31 -8.92 8.20 -68.67 -0.56 -9.48 16 4 C 0.12 3.19 6.71 22.93 0.15 3.35 16 5 C -0.17 -2.51 9.13 22.55 0.21 -2.31 16 6 C -0.09 -0.86 10.10 22.41 0.23 -0.64 16 7 C 0.05 0.79 11.18 84.89 0.95 1.74 16 8 N -0.44 -10.94 9.54 -184.63 -1.76 -12.70 16 9 C 0.00 0.12 6.76 41.93 0.28 0.41 16 10 C 0.56 21.69 7.76 86.78 0.67 22.37 16 11 O -0.56 -25.93 14.80 17.09 0.25 -25.68 16 12 N -0.69 -24.96 4.91 -445.30 -2.19 -27.15 16 13 C 0.17 6.92 2.12 45.02 0.10 7.02 16 14 H 0.05 2.60 7.58 -2.39 -0.02 2.58 16 15 C -0.13 -5.63 5.63 30.53 0.17 -5.45 16 16 C 0.18 9.61 5.27 86.22 0.45 10.07 16 17 N -0.60 -31.14 3.00 -699.94 -2.10 -33.23 16 18 C -0.27 -14.65 9.58 84.03 0.80 -13.84 16 19 H 0.08 3.99 7.89 -2.91 -0.02 3.97 16 20 C -0.05 -2.88 4.91 84.86 0.42 -2.47 16 21 N -0.94 -56.86 11.22 21.65 0.24 -56.62 16 22 Si 0.97 44.88 29.59 68.60 2.03 46.91 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 26 C 0.12 5.07 6.14 86.36 0.53 5.60 16 27 C 0.10 3.71 3.14 30.67 0.10 3.80 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 O -0.57 -17.77 13.16 -148.98 -1.96 -19.73 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 0.99 7.69 -2.39 -0.02 0.97 16 34 H 0.08 0.99 7.70 -2.39 -0.02 0.98 16 35 H 0.18 1.27 6.46 -2.91 -0.02 1.26 16 36 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.41 13.19 7.93 -92.70 -0.73 12.45 16 39 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.06 3.67 6.08 -2.39 -0.01 3.65 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.08 3.01 7.93 -2.39 -0.02 2.99 16 46 H 0.40 8.31 9.08 -74.06 -0.67 7.64 16 Total: -1.00 -81.92 377.83 -0.23 -82.16 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.39 Total: 26.68 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 6.20 Total: 28.85 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -5.80 Total: -129.70 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -2.27 Total: -54.90 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -81.92 -0.23 -82.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090857783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.578 kcal (2) G-P(sol) polarization free energy of solvation -81.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds