Wall clock time and date at job start Tue Mar 31 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00053 * 2 1 4 4 C 1.46895 * 111.00294 * 123.95819 * 2 1 3 5 5 C 1.52997 * 109.47304 * 170.00039 * 4 2 1 6 6 C 1.53005 * 109.47060 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46898 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99960 * 180.02562 * 7 6 5 9 9 O 1.21359 * 120.00076 * 0.02562 * 8 7 6 10 10 C 1.49320 * 119.99980 * 179.97438 * 8 7 6 11 11 O 1.21391 * 120.00284 * 359.97438 * 10 8 7 12 12 N 1.34776 * 119.99980 * 180.02562 * 10 8 7 13 13 C 1.39744 * 120.00196 * 175.49563 * 12 10 8 14 14 C 1.38994 * 120.00463 * 35.14522 * 13 12 10 15 15 C 1.37972 * 119.99250 * 180.02562 * 14 13 12 16 16 C 1.38937 * 120.00535 * 359.97438 * 15 14 13 17 17 O 1.35759 * 119.99063 * 180.02562 * 16 15 14 18 18 C 1.34805 * 116.99820 * 5.34540 * 17 16 15 19 19 H 1.07997 * 120.00464 * 354.96951 * 18 17 16 20 20 C 1.38650 * 119.99707 * 174.96065 * 18 17 16 21 21 N 1.31564 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47254 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46978 * 120.00258 * 22 20 18 25 25 H 1.48499 * 109.46774 * 239.99939 * 22 20 18 26 26 C 1.38929 * 120.01493 * 0.28163 * 16 15 14 27 27 C 1.37967 * 120.00709 * 359.44791 * 26 16 15 28 28 H 1.09001 * 109.46992 * 296.03805 * 1 2 3 29 29 H 1.08998 * 109.47647 * 56.04175 * 1 2 3 30 30 H 1.09003 * 109.47168 * 176.04751 * 1 2 3 31 31 H 1.08993 * 109.47162 * 183.95312 * 3 2 1 32 32 H 1.08999 * 109.47302 * 303.96180 * 3 2 1 33 33 H 1.09002 * 109.46886 * 63.95676 * 3 2 1 34 34 H 1.09006 * 109.47189 * 49.99708 * 4 2 1 35 35 H 1.09005 * 109.46953 * 290.00035 * 4 2 1 36 36 H 1.09000 * 109.47132 * 60.00121 * 5 4 2 37 37 H 1.09005 * 109.47112 * 299.99898 * 5 4 2 38 38 H 1.09000 * 109.47047 * 60.00072 * 6 5 4 39 39 H 1.09000 * 109.46790 * 299.99548 * 6 5 4 40 40 H 0.97004 * 120.00558 * 359.97438 * 7 6 5 41 41 H 0.96998 * 119.99965 * 355.50120 * 12 10 8 42 42 H 1.07998 * 120.00570 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.99363 * 179.97438 * 15 14 13 44 44 H 0.96993 * 120.00267 * 179.97438 * 21 20 18 45 45 H 1.08002 * 119.99687 * 179.70723 * 26 16 15 46 46 H 1.08007 * 120.00387 * 180.28091 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9702 6 6 4.0529 -1.7527 2.1553 7 7 5.4979 -1.9334 1.9954 8 6 6.1992 -2.6112 2.9255 9 8 5.6337 -3.0722 3.8953 10 6 7.6719 -2.7959 2.7623 11 8 8.2375 -2.3360 1.7916 12 7 8.3732 -3.4742 3.6921 13 6 9.7329 -3.7286 3.4939 14 6 10.5284 -2.7904 2.8466 15 6 11.8708 -3.0420 2.6506 16 6 12.4274 -4.2328 3.1007 17 8 13.7484 -4.4799 2.9081 18 6 14.4855 -3.4853 2.3744 19 1 14.0068 -2.5748 2.0458 20 6 15.8585 -3.6314 2.2476 21 7 16.4417 -4.7408 2.6476 22 14 16.8801 -2.2530 1.5088 23 1 15.9922 -1.1208 1.1418 24 1 17.8831 -1.7929 2.5026 25 1 17.5773 -2.7495 0.2953 26 6 11.6314 -5.1730 3.7430 27 6 10.2903 -4.9196 3.9443 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9164 -0.8523 33 1 1.7044 1.8723 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7975 -0.2248 2.0627 36 1 3.9909 0.0193 0.9322 37 1 3.7024 -1.4965 0.0449 38 1 3.5665 -2.7274 2.1937 39 1 3.8550 -1.2110 3.0803 40 1 5.9498 -1.5659 1.2197 41 1 7.9341 -3.7859 4.4989 42 1 10.0957 -1.8650 2.4964 43 1 12.4888 -2.3133 2.1473 44 1 17.4021 -4.8431 2.5585 45 1 12.0635 -6.1006 4.0885 46 1 9.6725 -5.6486 4.4476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048616543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:14 Heat of formation + Delta-G solvation = -58.787423 kcal Electronic energy + Delta-G solvation = -27074.447874 eV Core-core repulsion = 22965.444926 eV Total energy + Delta-G solvation = -4109.002948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88091 -39.37904 -38.52773 -38.16325 -36.63091 -35.72500 -34.01088 -32.22763 -32.04604 -30.27436 -28.45999 -28.10572 -27.11231 -25.47196 -24.46488 -22.88803 -22.26193 -21.59054 -21.17914 -20.07966 -18.82954 -17.96170 -17.30711 -16.95717 -16.58188 -16.25642 -16.07216 -15.82870 -15.23443 -15.06375 -14.98664 -14.54217 -14.37361 -14.12437 -13.75985 -13.64202 -13.60378 -12.96043 -12.93496 -12.92012 -12.62652 -12.47770 -12.28090 -12.01277 -11.89700 -11.83792 -11.78340 -11.60827 -11.38310 -11.24189 -11.07486 -10.75932 -10.44316 -9.79966 -9.65561 -9.54827 -9.22760 -8.91081 -8.75713 -8.26774 -7.02073 -6.48573 -4.05863 1.24454 2.11400 2.16226 2.35712 3.10461 3.13447 3.19094 3.21529 3.36343 3.63687 3.94784 4.35134 4.37868 4.50149 4.53139 4.57000 4.72236 4.86125 4.93486 5.04027 5.04953 5.05996 5.16350 5.21491 5.23338 5.37205 5.42356 5.58684 5.62452 5.65251 5.67574 5.91567 6.03316 6.10202 6.23436 6.46040 6.46838 6.61830 6.71326 6.87035 6.94631 7.02394 7.24212 7.38110 7.42564 7.66934 7.70948 7.96398 8.08017 8.97094 9.65477 10.69112 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.001706 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.761834 B =16411.284161 C =17591.390706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.019 3.981 4 C 0.058 3.942 5 C -0.131 4.131 6 C 0.119 3.881 7 N -0.702 5.702 8 C 0.512 3.488 9 O -0.523 6.523 10 C 0.495 3.505 11 O -0.509 6.509 12 N -0.623 5.623 13 C 0.021 3.979 14 C -0.060 4.060 15 C -0.222 4.222 16 C 0.150 3.850 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.177 4.177 27 C -0.084 4.084 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.415 0.585 41 H 0.414 0.586 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.270 0.730 45 H 0.124 0.876 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.842 8.911 -2.048 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.071 4.071 5 C -0.170 4.170 6 C -0.005 4.005 7 N -0.356 5.356 8 C 0.293 3.707 9 O -0.398 6.398 10 C 0.277 3.723 11 O -0.385 6.385 12 N -0.269 5.269 13 C -0.071 4.071 14 C -0.080 4.080 15 C -0.242 4.242 16 C 0.095 3.905 17 O -0.077 6.077 18 C -0.467 4.467 19 H 0.112 0.888 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.197 4.197 27 C -0.105 4.105 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.251 0.749 41 H 0.250 0.750 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.080 0.920 45 H 0.142 0.858 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -27.345 8.384 -2.434 28.704 hybrid contribution 0.145 1.137 0.377 1.206 sum -27.200 9.520 -2.057 28.891 Atomic orbital electron populations 1.22390 0.86976 1.02463 1.00614 1.61947 1.08082 1.14164 1.43004 1.22476 1.01296 0.88576 1.00601 1.22019 0.94682 0.98791 0.91597 1.21816 0.95420 1.01131 0.98595 1.21398 0.79240 1.00962 0.98868 1.45717 1.08993 1.55195 1.25684 1.20166 0.88131 0.79195 0.83224 1.90759 1.71378 1.47855 1.29842 1.20001 0.87467 0.81160 0.83706 1.90778 1.70556 1.47151 1.29992 1.42837 1.08728 1.53844 1.21464 1.17244 0.81601 0.96971 1.11278 1.20839 0.92500 0.97785 0.96848 1.21093 0.95046 0.99708 1.08326 1.19446 0.85814 0.92786 0.92408 1.83967 1.13962 1.39542 1.70179 1.21413 0.88999 0.96363 1.39957 0.88843 1.25307 0.95922 0.98137 0.97122 1.70047 1.11038 1.24947 1.43433 0.85632 0.79519 0.79610 0.78609 1.19013 1.20112 1.20100 1.20000 0.92617 1.00663 1.06453 1.20394 0.94681 0.94364 1.01013 0.95579 0.91215 0.91188 0.90877 0.91290 0.95527 0.90221 0.94321 0.90824 0.89872 0.90739 0.90988 0.74877 0.74981 0.85658 0.85026 0.91992 0.85831 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.57 60.06 0.57 0.69 16 2 N -0.55 -3.36 5.02 -251.26 -1.26 -4.62 16 3 C 0.02 0.10 9.32 60.07 0.56 0.66 16 4 C 0.06 0.31 4.96 -3.83 -0.02 0.29 16 5 C -0.13 -0.73 5.25 -26.73 -0.14 -0.87 16 6 C 0.12 0.85 5.67 -4.04 -0.02 0.83 16 7 N -0.70 -6.56 5.55 -60.77 -0.34 -6.90 16 8 C 0.51 6.32 7.88 -11.65 -0.09 6.23 16 9 O -0.52 -7.27 16.48 5.49 0.09 -7.18 16 10 C 0.50 7.20 7.73 -11.65 -0.09 7.11 16 11 O -0.51 -8.53 13.91 5.46 0.08 -8.45 16 12 N -0.62 -9.12 5.32 -10.27 -0.05 -9.17 16 13 C 0.02 0.38 6.30 -83.69 -0.53 -0.15 16 14 C -0.06 -1.18 8.69 -39.40 -0.34 -1.52 16 15 C -0.22 -4.89 9.16 -39.42 -0.36 -5.25 16 16 C 0.15 3.58 6.65 -39.07 -0.26 3.32 16 17 O -0.17 -4.89 9.75 0.09 0.00 -4.89 16 18 C -0.39 -10.83 9.48 30.88 0.29 -10.54 16 19 H 0.09 2.41 5.19 -52.49 -0.27 2.13 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.92 13.67 55.48 0.76 -24.17 16 22 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 C -0.18 -3.64 9.98 -39.42 -0.39 -4.03 16 27 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 28 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 30 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.07 0.37 6.47 -51.93 -0.34 0.04 16 32 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 33 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 35 H 0.04 0.21 8.12 -51.93 -0.42 -0.22 16 36 H 0.07 0.40 6.55 -51.93 -0.34 0.06 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.41 3.52 7.94 -40.82 -0.32 3.19 16 41 H 0.41 5.09 8.30 -40.82 -0.34 4.75 16 42 H 0.13 2.38 6.22 -52.49 -0.33 2.05 16 43 H 0.13 2.91 5.63 -52.49 -0.30 2.62 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 46 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -32.65 388.67 -7.64 -40.28 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.43 Total: 7.98 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.31 Total: -4.10 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.89 Total: -44.86 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.17 Total: -20.52 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.65 -7.64 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048616543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.505 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds