Wall clock time and date at job start Tue Mar 31 2020 18:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00053 * 2 1 4 4 C 1.46895 * 111.00294 * 123.95819 * 2 1 3 5 5 C 1.52997 * 109.47304 * 170.00039 * 4 2 1 6 6 C 1.53005 * 109.47060 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46898 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99960 * 180.02562 * 7 6 5 9 9 O 1.21359 * 120.00076 * 0.02562 * 8 7 6 10 10 C 1.49320 * 119.99980 * 179.97438 * 8 7 6 11 11 O 1.21391 * 120.00284 * 359.97438 * 10 8 7 12 12 N 1.34776 * 119.99980 * 180.02562 * 10 8 7 13 13 C 1.39744 * 120.00196 * 175.49563 * 12 10 8 14 14 C 1.38994 * 120.00463 * 35.14522 * 13 12 10 15 15 C 1.37972 * 119.99250 * 180.02562 * 14 13 12 16 16 C 1.38937 * 120.00535 * 359.97438 * 15 14 13 17 17 O 1.35759 * 119.99063 * 180.02562 * 16 15 14 18 18 C 1.34805 * 116.99820 * 5.34540 * 17 16 15 19 19 H 1.07997 * 120.00464 * 354.96951 * 18 17 16 20 20 C 1.38650 * 119.99707 * 174.96065 * 18 17 16 21 21 N 1.31564 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47254 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46978 * 120.00258 * 22 20 18 25 25 H 1.48499 * 109.46774 * 239.99939 * 22 20 18 26 26 C 1.38929 * 120.01493 * 0.28163 * 16 15 14 27 27 C 1.37967 * 120.00709 * 359.44791 * 26 16 15 28 28 H 1.09001 * 109.46992 * 296.03805 * 1 2 3 29 29 H 1.08998 * 109.47647 * 56.04175 * 1 2 3 30 30 H 1.09003 * 109.47168 * 176.04751 * 1 2 3 31 31 H 1.08993 * 109.47162 * 183.95312 * 3 2 1 32 32 H 1.08999 * 109.47302 * 303.96180 * 3 2 1 33 33 H 1.09002 * 109.46886 * 63.95676 * 3 2 1 34 34 H 1.09006 * 109.47189 * 49.99708 * 4 2 1 35 35 H 1.09005 * 109.46953 * 290.00035 * 4 2 1 36 36 H 1.09000 * 109.47132 * 60.00121 * 5 4 2 37 37 H 1.09005 * 109.47112 * 299.99898 * 5 4 2 38 38 H 1.09000 * 109.47047 * 60.00072 * 6 5 4 39 39 H 1.09000 * 109.46790 * 299.99548 * 6 5 4 40 40 H 0.97004 * 120.00558 * 359.97438 * 7 6 5 41 41 H 0.96998 * 119.99965 * 355.50120 * 12 10 8 42 42 H 1.07998 * 120.00570 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.99363 * 179.97438 * 15 14 13 44 44 H 0.96993 * 120.00267 * 179.97438 * 21 20 18 45 45 H 1.08002 * 119.99687 * 179.70723 * 26 16 15 46 46 H 1.08007 * 120.00387 * 180.28091 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9702 6 6 4.0529 -1.7527 2.1553 7 7 5.4979 -1.9334 1.9954 8 6 6.1992 -2.6112 2.9255 9 8 5.6337 -3.0722 3.8953 10 6 7.6719 -2.7959 2.7623 11 8 8.2375 -2.3360 1.7916 12 7 8.3732 -3.4742 3.6921 13 6 9.7329 -3.7286 3.4939 14 6 10.5284 -2.7904 2.8466 15 6 11.8708 -3.0420 2.6506 16 6 12.4274 -4.2328 3.1007 17 8 13.7484 -4.4799 2.9081 18 6 14.4855 -3.4853 2.3744 19 1 14.0068 -2.5748 2.0458 20 6 15.8585 -3.6314 2.2476 21 7 16.4417 -4.7408 2.6476 22 14 16.8801 -2.2530 1.5088 23 1 15.9922 -1.1208 1.1418 24 1 17.8831 -1.7929 2.5026 25 1 17.5773 -2.7495 0.2953 26 6 11.6314 -5.1730 3.7430 27 6 10.2903 -4.9196 3.9443 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9164 -0.8523 33 1 1.7044 1.8723 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7975 -0.2248 2.0627 36 1 3.9909 0.0193 0.9322 37 1 3.7024 -1.4965 0.0449 38 1 3.5665 -2.7274 2.1937 39 1 3.8550 -1.2110 3.0803 40 1 5.9498 -1.5659 1.2197 41 1 7.9341 -3.7859 4.4989 42 1 10.0957 -1.8650 2.4964 43 1 12.4888 -2.3133 2.1473 44 1 17.4021 -4.8431 2.5585 45 1 12.0635 -6.1006 4.0885 46 1 9.6725 -5.6486 4.4476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048616543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:13 Heat of formation + Delta-G solvation = -83.713125 kcal Electronic energy + Delta-G solvation = -27075.528734 eV Core-core repulsion = 22965.444926 eV Total energy + Delta-G solvation = -4110.083808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.06837 -40.80926 -39.86243 -38.71458 -38.21069 -36.56885 -35.39478 -34.17270 -32.68507 -31.90529 -29.96519 -28.48913 -27.92536 -27.27609 -25.52068 -24.01107 -23.47913 -22.64992 -22.02644 -21.20336 -20.18522 -19.59490 -18.85253 -18.32544 -17.43859 -17.29058 -16.93123 -16.68078 -16.30486 -16.15700 -15.94362 -15.58585 -15.50748 -15.48198 -15.35238 -14.99325 -14.76142 -14.66408 -14.17997 -13.59357 -13.48906 -13.38274 -13.31591 -13.25941 -12.95826 -12.81123 -12.73204 -12.64551 -12.44041 -12.36064 -12.32674 -12.10060 -11.69898 -11.46141 -11.13155 -10.73918 -10.58098 -10.34360 -9.87330 -9.32514 -8.69942 -8.47323 -6.14087 0.05981 0.51433 0.69570 1.23539 1.36643 1.44108 1.54470 2.06662 2.18013 2.54031 2.79674 3.01522 3.13311 3.34870 3.49174 3.90298 4.00391 4.06629 4.08879 4.10529 4.31530 4.45055 4.45553 4.50544 4.57252 4.58706 4.64668 4.65168 4.75101 4.77595 5.00318 5.03216 5.05283 5.06924 5.07708 5.13354 5.24024 5.28065 5.35610 5.50043 5.66923 5.86252 6.01636 6.06439 6.07352 6.10203 6.30522 6.69073 6.88363 6.97600 7.75557 8.75414 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.001706 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.761834 B =16411.284161 C =17591.390706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.563 5.563 3 C 0.018 3.982 4 C 0.058 3.942 5 C -0.121 4.121 6 C 0.120 3.880 7 N -0.687 5.687 8 C 0.519 3.481 9 O -0.537 6.537 10 C 0.499 3.501 11 O -0.530 6.530 12 N -0.619 5.619 13 C 0.048 3.952 14 C -0.068 4.068 15 C -0.227 4.227 16 C 0.112 3.888 17 O -0.225 6.225 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.019 4.019 21 N -0.916 5.916 22 Si 1.017 2.983 23 H -0.254 1.254 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.179 4.179 27 C -0.071 4.071 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.420 0.580 41 H 0.429 0.571 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.273 0.727 45 H 0.130 0.870 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.804 9.980 -2.044 32.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.287 5.287 3 C -0.130 4.130 4 C -0.070 4.070 5 C -0.159 4.159 6 C -0.003 4.003 7 N -0.340 5.340 8 C 0.299 3.701 9 O -0.415 6.415 10 C 0.281 3.719 11 O -0.406 6.406 12 N -0.266 5.266 13 C -0.045 4.045 14 C -0.088 4.088 15 C -0.247 4.247 16 C 0.061 3.939 17 O -0.131 6.131 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.217 4.217 21 N -0.554 5.554 22 Si 0.836 3.164 23 H -0.177 1.177 24 H -0.192 1.192 25 H -0.193 1.193 26 C -0.199 4.199 27 C -0.091 4.091 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.258 0.742 41 H 0.269 0.731 42 H 0.151 0.849 43 H 0.140 0.860 44 H 0.082 0.918 45 H 0.148 0.852 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -30.407 9.474 -2.429 31.942 hybrid contribution 0.612 0.820 0.417 1.104 sum -29.796 10.294 -2.012 31.588 Atomic orbital electron populations 1.22418 0.86353 1.02820 1.00908 1.61962 1.08818 1.14595 1.43344 1.22493 1.01338 0.88358 1.00828 1.22010 0.94400 0.99023 0.91581 1.21709 0.95568 1.00937 0.97656 1.21539 0.77599 1.01439 0.99714 1.45760 1.09875 1.53560 1.24851 1.19657 0.86864 0.79851 0.83700 1.90768 1.71139 1.48972 1.30583 1.20460 0.88566 0.79901 0.82991 1.90781 1.71323 1.47699 1.30839 1.42782 1.07354 1.54048 1.22432 1.17372 0.82917 0.96044 1.08156 1.20944 0.91663 0.98728 0.97460 1.21105 0.96089 0.99125 1.08412 1.19973 0.85127 0.94567 0.94194 1.83936 1.15832 1.40545 1.72807 1.21848 0.89784 0.96866 1.40497 0.88188 1.26538 0.96845 1.00900 0.97458 1.70176 1.11484 1.27543 1.46233 0.84551 0.77612 0.76345 0.77854 1.17702 1.19239 1.19315 1.20302 0.93675 1.00291 1.05633 1.20786 0.93649 0.94849 0.99779 0.95368 0.90834 0.90847 0.90826 0.90959 0.95424 0.89825 0.94087 0.90466 0.90124 0.90473 0.90648 0.74244 0.73147 0.84865 0.86035 0.91768 0.85165 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.57 127.69 1.22 1.41 16 2 N -0.56 -5.90 5.02 -948.86 -4.76 -10.66 16 3 C 0.02 0.16 9.32 127.69 1.19 1.35 16 4 C 0.06 0.51 4.96 86.30 0.43 0.94 16 5 C -0.12 -1.06 5.25 30.59 0.16 -0.90 16 6 C 0.12 1.39 5.67 86.38 0.49 1.88 16 7 N -0.69 -10.99 5.55 -464.54 -2.58 -13.57 16 8 C 0.52 11.35 7.88 87.23 0.69 12.04 16 9 O -0.54 -13.33 16.48 -3.28 -0.05 -13.38 16 10 C 0.50 13.13 7.73 87.23 0.67 13.80 16 11 O -0.53 -16.59 13.91 -3.37 -0.05 -16.63 16 12 N -0.62 -16.09 5.32 -304.74 -1.62 -17.71 16 13 C 0.05 1.59 6.30 38.24 0.24 1.83 16 14 C -0.07 -2.60 8.69 22.39 0.19 -2.41 16 15 C -0.23 -10.23 9.16 22.37 0.20 -10.02 16 16 C 0.11 5.53 6.65 22.60 0.15 5.68 16 17 O -0.23 -13.37 9.75 -22.59 -0.22 -13.59 16 18 C -0.41 -24.03 9.48 67.92 0.64 -23.39 16 19 H 0.10 5.39 5.19 -2.91 -0.02 5.38 16 20 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 21 N -0.92 -55.67 13.67 21.61 0.30 -55.37 16 22 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 23 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.18 -7.26 9.98 22.37 0.22 -7.04 16 27 C -0.07 -2.27 9.96 22.39 0.22 -2.04 16 28 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 30 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 31 H 0.07 0.63 6.47 -2.39 -0.02 0.61 16 32 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 33 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.08 0.66 8.06 -2.38 -0.02 0.64 16 35 H 0.04 0.35 8.12 -2.38 -0.02 0.33 16 36 H 0.08 0.65 6.55 -2.39 -0.02 0.63 16 37 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.42 6.04 7.94 -92.71 -0.74 5.31 16 41 H 0.43 8.88 8.30 -92.71 -0.77 8.11 16 42 H 0.13 4.89 6.22 -2.91 -0.02 4.87 16 43 H 0.12 5.60 5.63 -2.91 -0.02 5.58 16 44 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 46 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -73.66 388.67 -0.24 -73.89 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.48 Total: 29.64 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 7.20 Total: -7.50 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -8.66 Total: -97.31 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.32 Total: -43.61 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.66 -0.24 -73.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048616543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.822 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds