Wall clock time and date at job start Tue Mar 31 2020 18:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35905 * 116.99819 * 2 1 4 4 C 1.38808 * 120.01890 * 359.97438 * 3 2 1 5 5 C 1.38170 * 120.08289 * 179.97438 * 4 3 2 6 6 C 1.38162 * 120.12713 * 0.04508 * 5 4 3 7 7 C 1.38896 * 120.04071 * 359.95405 * 6 5 4 8 8 N 1.39919 * 120.04583 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00334 * 212.80371 * 8 7 6 10 10 O 1.21286 * 119.99957 * 5.20818 * 9 8 7 11 11 C 1.50704 * 119.99986 * 185.21521 * 9 8 7 12 12 N 1.46500 * 109.47021 * 179.97438 * 11 9 8 13 13 C 1.46503 * 120.00199 * 89.99617 * 12 11 9 14 14 C 1.34780 * 119.99676 * 269.99813 * 12 11 9 15 15 O 1.21282 * 120.00280 * 359.97438 * 14 12 11 16 16 C 1.50701 * 119.99642 * 180.02562 * 14 12 11 17 17 N 1.46507 * 109.46877 * 180.02562 * 16 14 12 18 18 C 1.46500 * 119.99408 * 269.99614 * 17 16 14 19 19 C 1.36928 * 120.00265 * 89.99746 * 17 16 14 20 20 H 1.08001 * 120.00010 * 23.67432 * 19 17 16 21 21 C 1.38815 * 120.00202 * 203.66629 * 19 17 16 22 22 N 1.31615 * 119.99403 * 14.37682 * 21 19 17 23 23 Si 1.86794 * 120.00053 * 194.37819 * 21 19 17 24 24 H 1.48499 * 109.47406 * 60.00406 * 23 21 19 25 25 H 1.48507 * 109.47016 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47324 * 299.99857 * 23 21 19 27 27 C 1.38587 * 120.02092 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46728 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47156 * 299.99795 * 1 2 3 30 30 H 1.08998 * 109.47693 * 59.99681 * 1 2 3 31 31 H 1.07997 * 119.95860 * 0.04205 * 4 3 2 32 32 H 1.07995 * 119.93686 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.98130 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99713 * 32.79577 * 8 7 6 35 35 H 1.08996 * 109.46931 * 299.99740 * 11 9 8 36 36 H 1.08999 * 109.46859 * 59.99546 * 11 9 8 37 37 H 1.08996 * 109.46686 * 90.00137 * 13 12 11 38 38 H 1.08997 * 109.46968 * 210.00073 * 13 12 11 39 39 H 1.09002 * 109.46858 * 330.00221 * 13 12 11 40 40 H 1.08999 * 109.46962 * 299.99699 * 16 14 12 41 41 H 1.08995 * 109.47270 * 60.00185 * 16 14 12 42 42 H 1.09000 * 109.47320 * 93.05099 * 18 17 16 43 43 H 1.09000 * 109.46882 * 213.05191 * 18 17 16 44 44 H 1.09000 * 109.47215 * 333.05337 * 18 17 16 45 45 H 0.97006 * 119.99596 * 179.97438 * 22 21 19 46 46 H 1.08004 * 120.05876 * 0.25923 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9161 3.6071 0.0000 6 6 3.2956 3.6841 0.0001 7 6 4.0568 2.5223 0.0007 8 7 5.4538 2.6001 0.0014 9 6 6.1816 1.6580 -0.6304 10 8 5.6263 0.7963 -1.2786 11 6 7.6853 1.6752 -0.5314 12 7 8.2380 0.5564 -1.2989 13 6 8.5738 0.7337 -2.7138 14 6 8.4375 -0.6360 -0.7032 15 8 8.1600 -0.7827 0.4683 16 6 9.0067 -1.7867 -1.4925 17 7 9.1255 -2.9619 -0.6259 18 6 10.3582 -3.1916 0.1317 19 6 8.0845 -3.8456 -0.5239 20 1 7.3573 -3.9174 -1.3192 21 6 7.9638 -4.6491 0.6015 22 7 8.6636 -4.3770 1.6825 23 14 6.8083 -6.1167 0.5818 24 1 7.2227 -7.0587 -0.4887 25 1 6.8611 -6.8060 1.8961 26 1 5.4220 -5.6517 0.3227 27 6 3.4298 1.2840 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2118 2.3183 -0.0003 32 1 1.3259 4.5115 0.0000 33 1 3.7823 4.6482 0.0001 34 1 5.8986 3.3323 0.4565 35 1 8.0651 2.6146 -0.9330 36 1 7.9816 1.5804 0.5132 37 1 9.6075 1.0676 -2.8028 38 1 8.4518 -0.2142 -3.2377 39 1 7.9119 1.4798 -3.1536 40 1 8.3450 -2.0169 -2.3276 41 1 9.9910 -1.5145 -1.8732 42 1 10.2610 -2.7542 1.1253 43 1 10.5346 -4.2635 0.2222 44 1 11.1963 -2.7281 -0.3889 45 1 8.5790 -4.9383 2.4691 46 1 4.0194 0.3791 -0.0052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:05 Heat of formation + Delta-G solvation = -59.698795 kcal Electronic energy + Delta-G solvation = -29190.990391 eV Core-core repulsion = 25081.947923 eV Total energy + Delta-G solvation = -4109.042468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84453 -40.90754 -40.13556 -38.40979 -37.11761 -36.19416 -35.60717 -33.37021 -31.86087 -31.18377 -29.81418 -28.44760 -28.10613 -27.86464 -26.76637 -24.32164 -23.58832 -22.92111 -21.65396 -20.24503 -19.53045 -18.84145 -18.46300 -17.99498 -17.47291 -17.21704 -16.99756 -16.81702 -16.70886 -16.35106 -16.18746 -16.01422 -15.42066 -15.03139 -14.73241 -14.62042 -14.51481 -14.42058 -13.80282 -13.72439 -13.64598 -13.33436 -13.25093 -13.08568 -12.90205 -12.76001 -12.72543 -12.59895 -12.31286 -12.24934 -12.10558 -12.09044 -11.92461 -11.35473 -11.11207 -10.89217 -10.54216 -9.59531 -9.49292 -9.08390 -8.80627 -7.85598 -5.34596 0.17483 0.40783 1.38583 1.43021 1.48895 1.49455 1.65702 2.04987 2.23056 2.44725 2.49059 2.76771 3.29173 3.67119 3.70713 3.84628 3.92705 4.08326 4.17795 4.24109 4.27786 4.33066 4.33958 4.40643 4.44673 4.52489 4.56347 4.63598 4.64788 4.72271 4.80060 4.85208 5.00368 5.23174 5.26249 5.27505 5.29668 5.43136 5.56097 5.60399 5.70846 5.83816 6.25251 6.36755 6.42683 6.49266 7.08179 7.10948 7.47106 7.82984 8.23136 9.17810 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.003589 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.954097 B = 7799.104456 C = 9914.972899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.354 6.354 3 C 0.125 3.875 4 C -0.224 4.224 5 C -0.053 4.053 6 C -0.174 4.174 7 C 0.177 3.823 8 N -0.660 5.660 9 C 0.488 3.512 10 O -0.553 6.553 11 C 0.100 3.900 12 N -0.612 5.612 13 C 0.081 3.919 14 C 0.475 3.525 15 O -0.570 6.570 16 C 0.132 3.868 17 N -0.592 5.592 18 C 0.178 3.822 19 C -0.271 4.271 20 H 0.065 0.935 21 C -0.048 4.048 22 N -0.928 5.928 23 Si 0.966 3.034 24 H -0.264 1.264 25 H -0.289 1.289 26 H -0.288 1.288 27 C -0.200 4.200 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.433 0.567 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.111 0.889 42 H -0.007 1.007 43 H 0.024 0.976 44 H 0.043 0.957 45 H 0.246 0.754 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 24.283 -7.892 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.268 6.268 3 C 0.079 3.921 4 C -0.243 4.243 5 C -0.071 4.071 6 C -0.194 4.194 7 C 0.082 3.918 8 N -0.309 5.309 9 C 0.275 3.725 10 O -0.429 6.429 11 C -0.027 4.027 12 N -0.347 5.347 13 C -0.061 4.061 14 C 0.263 3.737 15 O -0.447 6.447 16 C 0.001 3.999 17 N -0.312 5.312 18 C 0.033 3.967 19 C -0.401 4.401 20 H 0.083 0.917 21 C -0.244 4.244 22 N -0.573 5.573 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.215 1.215 26 H -0.215 1.215 27 C -0.221 4.221 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.191 0.809 33 H 0.184 0.816 34 H 0.273 0.727 35 H 0.182 0.818 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.011 0.989 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.970 23.213 -7.587 26.378 hybrid contribution -0.778 -0.956 0.840 1.492 sum -10.748 22.257 -6.746 25.621 Atomic orbital electron populations 1.23365 0.75950 1.05353 1.02791 1.86100 1.24123 1.27896 1.88686 1.19040 0.91459 0.85471 0.96105 1.21532 1.01242 0.91492 1.10017 1.21241 0.93836 0.97829 0.94183 1.21185 0.94303 0.96860 1.07087 1.17617 0.83424 0.93024 0.97769 1.43447 1.03952 1.29193 1.54259 1.22281 0.92181 0.80328 0.77662 1.90750 1.73696 1.37087 1.41349 1.21436 0.87054 0.93672 1.00528 1.48015 1.63506 1.10258 1.12969 1.22001 1.02150 1.03466 0.78456 1.23444 0.77124 0.84626 0.88544 1.90679 1.51875 1.82615 1.19546 1.21248 1.01237 0.84277 0.93088 1.44047 1.13574 1.21645 1.51977 1.20564 0.85029 0.98051 0.93064 1.19408 1.06261 1.13775 1.00685 0.91747 1.25857 1.00711 1.03354 0.94443 1.70291 1.45393 1.39175 1.02410 0.85387 0.78510 0.79760 0.77029 1.18940 1.21491 1.21486 1.20305 0.92950 0.98024 1.10835 0.87289 0.90855 0.90955 0.82639 0.80949 0.81572 0.72686 0.81794 0.87990 0.89243 0.91240 0.90142 0.89980 0.87166 0.98889 0.95718 0.93884 0.94457 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.35 -11.43 10.49 -92.49 -0.97 -12.40 16 3 C 0.12 3.86 6.68 22.49 0.15 4.02 16 4 C -0.22 -4.60 9.04 22.39 0.20 -4.40 16 5 C -0.05 -0.82 10.03 22.24 0.22 -0.60 16 6 C -0.17 -3.06 9.96 22.41 0.22 -2.84 16 7 C 0.18 4.78 6.29 38.14 0.24 5.02 16 8 N -0.66 -15.52 5.34 -303.55 -1.62 -17.15 16 9 C 0.49 15.31 7.64 87.66 0.67 15.98 16 10 O -0.55 -23.74 14.07 -3.05 -0.04 -23.78 16 11 C 0.10 2.56 5.89 85.63 0.50 3.06 16 12 N -0.61 -19.37 2.36 -851.12 -2.01 -21.38 16 13 C 0.08 1.69 10.24 127.77 1.31 3.00 16 14 C 0.48 21.27 7.74 87.66 0.68 21.94 16 15 O -0.57 -32.81 16.01 -3.04 -0.05 -32.86 16 16 C 0.13 5.67 4.74 85.63 0.41 6.08 16 17 N -0.59 -32.65 2.41 -731.30 -1.76 -34.41 16 18 C 0.18 9.50 9.03 127.77 1.15 10.65 16 19 C -0.27 -16.67 9.64 84.04 0.81 -15.86 16 20 H 0.06 3.90 7.86 -2.91 -0.02 3.88 16 21 C -0.05 -2.98 5.05 84.86 0.43 -2.55 16 22 N -0.93 -61.00 10.85 21.65 0.23 -60.76 16 23 Si 0.97 50.04 29.58 68.60 2.03 52.07 16 24 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 26 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 27 C -0.20 -7.25 8.60 22.49 0.19 -7.06 16 28 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 30 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 31 H 0.16 2.19 6.29 -2.91 -0.02 2.17 16 32 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.43 5.74 8.82 -92.70 -0.82 4.92 16 35 H 0.16 2.05 8.07 -2.39 -0.02 2.03 16 36 H 0.10 2.91 7.42 -2.39 -0.02 2.90 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.56 6.44 -2.39 -0.02 1.54 16 39 H 0.08 1.40 8.07 -2.39 -0.02 1.38 16 40 H 0.08 3.37 7.29 -2.39 -0.02 3.35 16 41 H 0.11 3.69 7.84 -2.39 -0.02 3.67 16 42 H -0.01 -0.45 7.45 -2.39 -0.02 -0.46 16 43 H 0.02 1.38 7.28 -2.39 -0.02 1.36 16 44 H 0.04 1.85 7.86 -2.39 -0.02 1.84 16 45 H 0.25 15.68 8.31 -92.70 -0.77 14.91 16 46 H 0.09 4.17 6.36 -2.91 -0.02 4.15 16 Total: -1.00 -102.12 385.90 4.30 -97.81 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.19 Total: 14.94 kcal Atomic # 6 Polarization: 29.61 SS G_CDS: 8.30 Total: 37.92 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -5.16 Total: -133.70 kcal Atomic # 8 Polarization: -67.98 SS G_CDS: -1.06 Total: -69.04 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.03 Total: 52.07 kcal Total: -102.12 4.30 -97.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.115 kcal (2) G-P(sol) polarization free energy of solvation -102.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds