Wall clock time and date at job start Tue Mar 31 2020 18:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34635 * 117.00312 * 2 1 4 4 O 1.21517 * 119.99900 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00344 * 179.97438 * 3 2 1 6 6 C 1.46492 * 119.99749 * 0.02562 * 5 3 2 7 7 C 1.46501 * 120.00035 * 180.02562 * 5 3 2 8 8 C 1.50707 * 109.46901 * 270.00284 * 7 5 3 9 9 C 1.38283 * 119.92926 * 269.72131 * 8 7 5 10 10 C 1.38107 * 120.06855 * 179.76819 * 9 8 7 11 11 C 1.38866 * 119.93215 * 0.50728 * 10 9 8 12 12 N 1.39947 * 120.07293 * 179.71974 * 11 10 9 13 13 C 1.34770 * 119.99846 * 144.93662 * 12 11 10 14 14 O 1.21591 * 120.00456 * 4.59207 * 13 12 11 15 15 N 1.34779 * 120.00347 * 184.59346 * 13 12 11 16 16 C 1.46504 * 119.99599 * 359.97438 * 15 13 12 17 17 C 1.46494 * 120.00758 * 179.97438 * 15 13 12 18 18 C 1.50706 * 109.47144 * 89.99473 * 17 15 13 19 19 H 1.07999 * 119.99891 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99979 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99904 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47189 * 89.99993 * 22 20 18 24 24 H 1.48499 * 109.46883 * 210.00206 * 22 20 18 25 25 H 1.48509 * 109.47038 * 329.99589 * 22 20 18 26 26 C 1.38861 * 119.85918 * 359.75294 * 11 10 9 27 27 C 1.38119 * 119.93186 * 359.97438 * 26 11 10 28 28 H 1.09000 * 109.47083 * 60.00352 * 1 2 3 29 29 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47127 * 300.00037 * 1 2 3 31 31 H 1.09007 * 109.47083 * 90.00286 * 6 5 3 32 32 H 1.09003 * 109.47209 * 209.99757 * 6 5 3 33 33 H 1.09000 * 109.47650 * 329.99660 * 6 5 3 34 34 H 1.08998 * 109.47228 * 30.00213 * 7 5 3 35 35 H 1.08998 * 109.47494 * 150.00380 * 7 5 3 36 36 H 1.08004 * 119.96031 * 0.02652 * 9 8 7 37 37 H 1.08000 * 120.03464 * 180.23444 * 10 9 8 38 38 H 0.97000 * 120.00102 * 324.93937 * 12 11 10 39 39 H 1.09001 * 109.46836 * 90.00023 * 16 15 13 40 40 H 1.08994 * 109.47219 * 210.00040 * 16 15 13 41 41 H 1.09004 * 109.47135 * 330.00335 * 16 15 13 42 42 H 1.09000 * 109.47609 * 210.00089 * 17 15 13 43 43 H 1.09006 * 109.46653 * 330.00192 * 17 15 13 44 44 H 0.97000 * 120.00193 * 179.97438 * 21 20 18 45 45 H 1.07998 * 120.03862 * 179.97438 * 26 11 10 46 46 H 1.08002 * 119.96828 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0415 0.0005 7 6 4.0743 2.5755 0.0011 8 6 4.3028 3.0234 -1.4196 9 6 5.4777 2.6893 -2.0679 10 6 5.6881 3.0942 -3.3714 11 6 4.7228 3.8465 -4.0276 12 7 4.9354 4.2634 -5.3465 13 6 3.8998 4.3342 -6.2061 14 8 2.7692 4.1169 -5.8151 15 7 4.1174 4.6458 -7.4992 16 6 5.4796 4.9081 -7.9702 17 6 2.9918 4.7223 -8.4337 18 6 2.4459 6.1269 -8.4488 19 1 2.8930 6.8867 -7.8249 20 6 1.3757 6.4419 -9.2590 21 7 0.8996 7.6677 -9.2725 22 14 0.6019 5.1275 -10.3374 23 1 -0.4848 4.4482 -9.5873 24 1 0.0410 5.7572 -11.5598 25 1 1.6346 4.1322 -10.7227 26 6 3.5464 4.1850 -3.3721 27 6 3.3395 3.7722 -2.0703 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.4053 -0.2630 -1.0272 32 1 5.1512 0.2213 0.5147 33 1 3.6584 -0.7481 0.5140 34 1 3.4461 3.3031 0.5149 35 1 5.0321 2.4951 0.5152 36 1 6.2298 2.1075 -1.5555 37 1 6.6042 2.8297 -3.8784 38 1 5.8282 4.5013 -5.6420 39 1 5.9330 3.9762 -8.3078 40 1 5.4478 5.6172 -8.7973 41 1 6.0715 5.3260 -7.1558 42 1 3.3311 4.4535 -9.4341 43 1 2.2097 4.0319 -8.1176 44 1 0.1470 7.8895 -9.8427 45 1 2.7939 4.7703 -3.8795 46 1 2.4249 4.0355 -1.5598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085600278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:28 Heat of formation + Delta-G solvation = -55.084562 kcal Electronic energy + Delta-G solvation = -28680.478731 eV Core-core repulsion = 24571.636351 eV Total energy + Delta-G solvation = -4108.842380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.74347 -40.24124 -38.72129 -37.05303 -35.81143 -35.07459 -34.38675 -32.51254 -30.85231 -30.69887 -28.50789 -27.96624 -27.23048 -26.06962 -25.25810 -22.98491 -22.58364 -21.48097 -20.48679 -19.45676 -18.26652 -17.88140 -17.28921 -16.99687 -16.96973 -16.83723 -15.66235 -15.28246 -15.11944 -14.94415 -14.66966 -14.23989 -14.04646 -13.83137 -13.49134 -13.41784 -13.24715 -13.04890 -12.94501 -12.72643 -12.42676 -12.33045 -12.23378 -12.08384 -12.07604 -11.73482 -11.47256 -11.04870 -10.95692 -10.91532 -10.64591 -10.53058 -10.20839 -9.98237 -9.58118 -9.33810 -9.04457 -8.73852 -8.58763 -8.01121 -7.63099 -6.08499 -4.07512 1.27822 1.57263 2.11234 2.68089 3.09539 3.30182 3.35944 3.38226 3.59972 3.77797 4.08371 4.36228 4.40160 4.70903 4.77843 4.86386 4.96568 5.06032 5.08641 5.10479 5.22590 5.23976 5.30896 5.40406 5.41754 5.46557 5.57963 5.71972 5.74865 5.85101 6.02190 6.03665 6.14286 6.18009 6.38874 6.43171 6.64118 6.73180 6.81204 6.88365 7.08578 7.22631 7.28459 7.45944 7.61242 8.11182 8.41989 8.47282 8.94238 9.11929 9.51490 11.04931 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002683 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.023200 B =10434.476335 C =11687.012395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.647 3.353 4 O -0.564 6.564 5 N -0.594 5.594 6 C 0.084 3.916 7 C 0.178 3.822 8 C -0.146 4.146 9 C -0.085 4.085 10 C -0.161 4.161 11 C 0.186 3.814 12 N -0.696 5.696 13 C 0.700 3.300 14 O -0.566 6.566 15 N -0.608 5.608 16 C 0.084 3.916 17 C 0.230 3.770 18 C -0.530 4.530 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.123 4.123 27 C -0.073 4.073 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.402 0.598 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.038 0.962 44 H 0.265 0.735 45 H 0.146 0.854 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 -15.891 18.773 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.401 3.599 4 O -0.453 6.453 5 N -0.334 5.334 6 C -0.059 4.059 7 C 0.057 3.943 8 C -0.149 4.149 9 C -0.105 4.105 10 C -0.182 4.182 11 C 0.090 3.910 12 N -0.345 5.345 13 C 0.401 3.599 14 O -0.442 6.442 15 N -0.343 5.343 16 C -0.060 4.060 17 C 0.110 3.890 18 C -0.569 4.569 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.144 4.144 27 C -0.092 4.092 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.239 0.761 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.163 0.837 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.907 -15.641 18.834 26.802 hybrid contribution -0.067 -0.353 -1.002 1.065 sum 10.840 -15.994 17.832 26.293 Atomic orbital electron populations 1.23198 0.74413 1.03362 1.02917 1.86220 1.24176 1.31188 1.87047 1.18099 0.83232 0.82206 0.76359 1.91006 1.64165 1.34837 1.55249 1.46709 1.02203 1.08193 1.76313 1.21781 0.95812 0.85924 1.02365 1.20351 0.97532 0.82774 0.93646 1.20024 0.95625 1.02276 0.96931 1.20649 0.96608 0.99233 0.93979 1.20779 1.00354 1.00995 0.96085 1.17645 0.95536 0.94578 0.83278 1.42945 1.11446 1.70909 1.09201 1.15877 0.84064 0.78751 0.81171 1.90902 1.20846 1.56091 1.76333 1.47137 1.08689 1.71148 1.07307 1.21621 0.83310 1.00603 1.00506 1.19624 0.84103 0.98531 0.86787 1.21346 1.15790 0.94219 1.25537 0.90774 1.24849 0.96161 0.95349 0.96635 1.69895 1.25486 1.18549 1.39609 0.86846 0.80380 0.82124 0.80289 1.19853 1.21062 1.19071 1.21519 0.98047 1.00936 0.93868 1.21101 0.98247 0.95854 0.93985 0.91602 0.88094 0.91918 0.92387 0.90823 0.90551 0.88765 0.89106 0.86192 0.86028 0.76087 0.93524 0.90012 0.92851 0.94980 0.94376 0.92537 0.83657 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -4.23 9.39 -40.31 -0.38 -4.61 16 3 C 0.65 8.46 8.39 54.05 0.45 8.91 16 4 O -0.56 -9.04 15.23 -19.29 -0.29 -9.33 16 5 N -0.59 -6.14 2.86 -188.80 -0.54 -6.68 16 6 C 0.08 0.58 10.49 59.84 0.63 1.20 16 7 C 0.18 1.71 5.57 -5.19 -0.03 1.68 16 8 C -0.15 -1.77 5.46 -104.59 -0.57 -2.34 16 9 C -0.09 -0.91 9.69 -39.61 -0.38 -1.30 16 10 C -0.16 -1.96 9.97 -39.40 -0.39 -2.35 16 11 C 0.19 2.95 6.30 -83.69 -0.53 2.42 16 12 N -0.70 -11.31 5.22 -14.22 -0.07 -11.39 16 13 C 0.70 14.89 8.12 -86.92 -0.71 14.18 16 14 O -0.57 -14.44 13.36 5.29 0.07 -14.37 16 15 N -0.61 -12.66 2.86 -188.74 -0.54 -13.20 16 16 C 0.08 1.25 10.24 59.85 0.61 1.86 16 17 C 0.23 5.68 4.23 -5.19 -0.02 5.66 16 18 C -0.53 -15.35 9.94 -34.44 -0.34 -15.69 16 19 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 22 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 23 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 26 C -0.12 -2.18 8.70 -39.39 -0.34 -2.52 16 27 C -0.07 -1.11 9.69 -39.61 -0.38 -1.50 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.31 7.89 -51.93 -0.41 -0.10 16 33 H 0.08 0.49 7.37 -51.93 -0.38 0.10 16 34 H 0.09 0.99 7.36 -51.93 -0.38 0.61 16 35 H 0.09 0.56 7.83 -51.93 -0.41 0.16 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.40 5.07 6.52 -40.82 -0.27 4.81 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.05 0.64 6.30 -51.93 -0.33 0.31 16 42 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 43 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.15 3.06 6.22 -52.49 -0.33 2.74 16 46 H 0.13 2.03 7.57 -52.49 -0.40 1.64 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -38.04 386.22 -7.46 -45.50 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.59 Total: 4.51 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -1.04 Total: 13.80 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.38 Total: -58.37 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.60 Total: -28.31 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.04 -7.46 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085600278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.584 kcal (2) G-P(sol) polarization free energy of solvation -38.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds