Wall clock time and date at job start Tue Mar 31 2020 18:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34635 * 117.00312 * 2 1 4 4 O 1.21517 * 119.99900 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00344 * 179.97438 * 3 2 1 6 6 C 1.46492 * 119.99749 * 0.02562 * 5 3 2 7 7 C 1.46501 * 120.00035 * 180.02562 * 5 3 2 8 8 C 1.50707 * 109.46901 * 270.00284 * 7 5 3 9 9 C 1.38283 * 119.92926 * 269.72131 * 8 7 5 10 10 C 1.38107 * 120.06855 * 179.76819 * 9 8 7 11 11 C 1.38866 * 119.93215 * 0.50728 * 10 9 8 12 12 N 1.39947 * 120.07293 * 179.71974 * 11 10 9 13 13 C 1.34770 * 119.99846 * 144.93662 * 12 11 10 14 14 O 1.21591 * 120.00456 * 4.59207 * 13 12 11 15 15 N 1.34779 * 120.00347 * 184.59346 * 13 12 11 16 16 C 1.46504 * 119.99599 * 359.97438 * 15 13 12 17 17 C 1.46494 * 120.00758 * 179.97438 * 15 13 12 18 18 C 1.50706 * 109.47144 * 89.99473 * 17 15 13 19 19 H 1.07999 * 119.99891 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99979 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99904 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47189 * 89.99993 * 22 20 18 24 24 H 1.48499 * 109.46883 * 210.00206 * 22 20 18 25 25 H 1.48509 * 109.47038 * 329.99589 * 22 20 18 26 26 C 1.38861 * 119.85918 * 359.75294 * 11 10 9 27 27 C 1.38119 * 119.93186 * 359.97438 * 26 11 10 28 28 H 1.09000 * 109.47083 * 60.00352 * 1 2 3 29 29 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47127 * 300.00037 * 1 2 3 31 31 H 1.09007 * 109.47083 * 90.00286 * 6 5 3 32 32 H 1.09003 * 109.47209 * 209.99757 * 6 5 3 33 33 H 1.09000 * 109.47650 * 329.99660 * 6 5 3 34 34 H 1.08998 * 109.47228 * 30.00213 * 7 5 3 35 35 H 1.08998 * 109.47494 * 150.00380 * 7 5 3 36 36 H 1.08004 * 119.96031 * 0.02652 * 9 8 7 37 37 H 1.08000 * 120.03464 * 180.23444 * 10 9 8 38 38 H 0.97000 * 120.00102 * 324.93937 * 12 11 10 39 39 H 1.09001 * 109.46836 * 90.00023 * 16 15 13 40 40 H 1.08994 * 109.47219 * 210.00040 * 16 15 13 41 41 H 1.09004 * 109.47135 * 330.00335 * 16 15 13 42 42 H 1.09000 * 109.47609 * 210.00089 * 17 15 13 43 43 H 1.09006 * 109.46653 * 330.00192 * 17 15 13 44 44 H 0.97000 * 120.00193 * 179.97438 * 21 20 18 45 45 H 1.07998 * 120.03862 * 179.97438 * 26 11 10 46 46 H 1.08002 * 119.96828 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0415 0.0005 7 6 4.0743 2.5755 0.0011 8 6 4.3028 3.0234 -1.4196 9 6 5.4777 2.6893 -2.0679 10 6 5.6881 3.0942 -3.3714 11 6 4.7228 3.8465 -4.0276 12 7 4.9354 4.2634 -5.3465 13 6 3.8998 4.3342 -6.2061 14 8 2.7692 4.1169 -5.8151 15 7 4.1174 4.6458 -7.4992 16 6 5.4796 4.9081 -7.9702 17 6 2.9918 4.7223 -8.4337 18 6 2.4459 6.1269 -8.4488 19 1 2.8930 6.8867 -7.8249 20 6 1.3757 6.4419 -9.2590 21 7 0.8996 7.6677 -9.2725 22 14 0.6019 5.1275 -10.3374 23 1 -0.4848 4.4482 -9.5873 24 1 0.0410 5.7572 -11.5598 25 1 1.6346 4.1322 -10.7227 26 6 3.5464 4.1850 -3.3721 27 6 3.3395 3.7722 -2.0703 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.4053 -0.2630 -1.0272 32 1 5.1512 0.2213 0.5147 33 1 3.6584 -0.7481 0.5140 34 1 3.4461 3.3031 0.5149 35 1 5.0321 2.4951 0.5152 36 1 6.2298 2.1075 -1.5555 37 1 6.6042 2.8297 -3.8784 38 1 5.8282 4.5013 -5.6420 39 1 5.9330 3.9762 -8.3078 40 1 5.4478 5.6172 -8.7973 41 1 6.0715 5.3260 -7.1558 42 1 3.3311 4.4535 -9.4341 43 1 2.2097 4.0319 -8.1176 44 1 0.1470 7.8895 -9.8427 45 1 2.7939 4.7703 -3.8795 46 1 2.4249 4.0355 -1.5598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085600278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:26 Heat of formation + Delta-G solvation = -82.664264 kcal Electronic energy + Delta-G solvation = -28681.674676 eV Core-core repulsion = 24571.636351 eV Total energy + Delta-G solvation = -4110.038326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81156 -41.51823 -39.92859 -37.98448 -36.93209 -36.62067 -35.76833 -34.64370 -31.94206 -31.84384 -30.29903 -28.75023 -28.08376 -27.39432 -26.28900 -24.64700 -23.83487 -22.70456 -21.44416 -20.95286 -19.40446 -19.18108 -19.01069 -18.35039 -18.18089 -17.81406 -16.88191 -16.74846 -16.49602 -16.13782 -15.85890 -15.51147 -15.15795 -15.10939 -14.86265 -14.55862 -14.38805 -14.37274 -14.07978 -13.82242 -13.71288 -13.57951 -13.33413 -13.23955 -12.98864 -12.94587 -12.86891 -12.59006 -12.44337 -12.12716 -12.04845 -11.81206 -11.77442 -11.68208 -11.38021 -10.97559 -10.85213 -9.86995 -9.84395 -9.57332 -8.96614 -8.36320 -6.41852 0.20262 0.49426 1.25430 1.30565 1.36234 1.43910 1.67036 1.71358 2.11628 2.29262 2.82195 2.96510 3.01306 3.11273 3.88528 3.90219 4.09358 4.22251 4.24599 4.30964 4.31759 4.37556 4.48652 4.55216 4.59073 4.63779 4.68864 4.73802 4.73948 4.79046 4.84982 4.90358 5.01659 5.10974 5.21019 5.30973 5.37354 5.42155 5.42472 5.53887 5.60652 5.68565 5.97818 6.11572 6.23213 6.23601 6.59226 6.96429 7.19031 7.19986 7.54709 8.80977 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002683 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.023200 B =10434.476335 C =11687.012395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.372 6.372 3 C 0.633 3.367 4 O -0.608 6.608 5 N -0.589 5.589 6 C 0.078 3.922 7 C 0.176 3.824 8 C -0.136 4.136 9 C -0.067 4.067 10 C -0.142 4.142 11 C 0.158 3.842 12 N -0.675 5.675 13 C 0.691 3.309 14 O -0.622 6.622 15 N -0.617 5.617 16 C 0.076 3.924 17 C 0.240 3.760 18 C -0.538 4.538 19 H 0.025 0.975 20 C 0.009 3.991 21 N -0.947 5.947 22 Si 0.950 3.050 23 H -0.280 1.280 24 H -0.273 1.273 25 H -0.233 1.233 26 C -0.157 4.157 27 C -0.090 4.090 28 H 0.046 0.954 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.422 0.578 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.269 0.731 45 H 0.092 0.908 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.302 -19.678 19.413 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.285 6.285 3 C 0.388 3.612 4 O -0.499 6.499 5 N -0.328 5.328 6 C -0.063 4.063 7 C 0.056 3.944 8 C -0.138 4.138 9 C -0.085 4.085 10 C -0.162 4.162 11 C 0.063 3.937 12 N -0.326 5.326 13 C 0.393 3.607 14 O -0.502 6.502 15 N -0.351 5.351 16 C -0.066 4.066 17 C 0.117 3.883 18 C -0.577 4.577 19 H 0.043 0.957 20 C -0.188 4.188 21 N -0.587 5.587 22 Si 0.773 3.227 23 H -0.206 1.206 24 H -0.198 1.198 25 H -0.156 1.156 26 C -0.178 4.178 27 C -0.110 4.110 28 H 0.065 0.935 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.194 0.806 37 H 0.180 0.820 38 H 0.262 0.738 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.142 -19.453 19.491 31.427 hybrid contribution -1.305 0.859 -1.027 1.870 sum 13.837 -18.595 18.465 29.634 Atomic orbital electron populations 1.23428 0.73388 1.05477 1.02076 1.86224 1.25252 1.30263 1.86774 1.18552 0.84332 0.82071 0.76244 1.90984 1.65424 1.36251 1.57237 1.46902 1.01362 1.09668 1.74906 1.22070 0.96898 0.84380 1.02982 1.20540 0.99484 0.82344 0.92062 1.20336 0.95082 1.00310 0.98045 1.21232 0.96438 0.97658 0.93186 1.21211 1.00136 0.98443 0.96454 1.17893 0.96148 0.96630 0.83060 1.42578 1.10988 1.70270 1.08743 1.16165 0.84332 0.78484 0.81729 1.90873 1.23498 1.58411 1.77408 1.47124 1.10030 1.71130 1.06843 1.21965 0.80581 1.02616 1.01394 1.19288 0.85236 0.94939 0.88799 1.21584 1.16089 0.95490 1.24519 0.95665 1.25885 0.96633 0.97921 0.98410 1.70054 1.26411 1.21135 1.41070 0.85684 0.79662 0.79305 0.78076 1.20570 1.19792 1.15590 1.21212 0.98601 1.02798 0.95205 1.20985 0.98891 0.97727 0.93386 0.93480 0.84432 0.91819 0.92416 0.86912 0.90299 0.90544 0.83852 0.80611 0.81987 0.73778 0.89737 0.90763 0.89964 0.92258 0.96466 0.92231 0.89025 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.56 113.37 1.20 2.09 16 2 O -0.37 -8.26 9.39 -55.45 -0.52 -8.78 16 3 C 0.63 16.57 8.39 129.79 1.09 17.66 16 4 O -0.61 -20.65 15.23 19.79 0.30 -20.35 16 5 N -0.59 -10.80 2.86 -981.65 -2.80 -13.60 16 6 C 0.08 0.73 10.49 127.77 1.34 2.07 16 7 C 0.18 2.90 5.57 85.63 0.48 3.37 16 8 C -0.14 -3.01 5.46 -19.84 -0.11 -3.12 16 9 C -0.07 -1.08 9.69 22.25 0.22 -0.86 16 10 C -0.14 -2.87 9.97 22.39 0.22 -2.65 16 11 C 0.16 4.97 6.30 38.15 0.24 5.21 16 12 N -0.67 -21.70 5.22 -317.18 -1.65 -23.35 16 13 C 0.69 30.45 8.12 179.06 1.45 31.90 16 14 O -0.62 -34.20 13.36 -4.00 -0.05 -34.26 16 15 N -0.62 -25.85 2.86 -869.29 -2.48 -28.34 16 16 C 0.08 2.12 10.24 127.77 1.31 3.43 16 17 C 0.24 12.00 4.23 85.64 0.36 12.36 16 18 C -0.54 -32.62 9.94 25.60 0.25 -32.37 16 19 H 0.02 1.72 8.06 -2.91 -0.02 1.69 16 20 C 0.01 0.57 5.47 84.66 0.46 1.03 16 21 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 22 Si 0.95 45.44 27.47 68.60 1.88 47.32 16 23 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.23 -9.83 6.54 99.48 0.65 -9.18 16 26 C -0.16 -6.06 8.70 22.39 0.19 -5.86 16 27 C -0.09 -2.96 9.69 22.25 0.22 -2.75 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.11 0.22 7.89 -2.39 -0.02 0.20 16 33 H 0.08 0.74 7.37 -2.39 -0.02 0.72 16 34 H 0.08 1.57 7.36 -2.39 -0.02 1.56 16 35 H 0.14 0.91 7.83 -2.39 -0.02 0.89 16 36 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.42 9.66 6.52 -92.71 -0.60 9.06 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 41 H 0.08 1.77 6.30 -2.38 -0.02 1.76 16 42 H 0.06 2.65 7.13 -2.39 -0.02 2.63 16 43 H 0.02 0.93 6.85 -2.38 -0.02 0.92 16 44 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 45 H 0.09 4.46 6.22 -2.91 -0.02 4.44 16 46 H 0.10 3.78 7.57 -2.91 -0.02 3.75 16 Total: -1.00 -95.11 386.22 4.24 -90.87 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.34 Total: 20.08 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 8.93 Total: 31.53 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -6.64 Total: -126.42 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -0.27 Total: -63.39 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -95.11 4.24 -90.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085600278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.202 kcal (2) G-P(sol) polarization free energy of solvation -95.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds