Wall clock time and date at job start Tue Mar 31 2020 18:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99795 * 2 1 4 4 C 1.34767 * 120.00046 * 179.97438 * 2 1 3 5 5 O 1.21282 * 120.00043 * 0.02562 * 4 2 1 6 6 C 1.50699 * 120.00209 * 180.02562 * 4 2 1 7 7 O 1.42900 * 109.47565 * 180.02562 * 6 4 2 8 8 C 1.35899 * 117.00239 * 179.97438 * 7 6 4 9 9 C 1.38807 * 120.01974 * 359.73483 * 8 7 6 10 10 C 1.38169 * 120.08020 * 179.69615 * 9 8 7 11 11 C 1.38161 * 120.12416 * 0.59627 * 10 9 8 12 12 C 1.38881 * 120.04214 * 359.67059 * 11 10 9 13 13 N 1.39944 * 120.04050 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00328 * 324.88412 * 13 12 11 15 15 O 1.21583 * 119.99996 * 4.59119 * 14 13 12 16 16 N 1.34779 * 120.00190 * 184.58142 * 14 13 12 17 17 C 1.46503 * 119.99394 * 0.02562 * 16 14 13 18 18 C 1.46494 * 120.00262 * 180.02562 * 16 14 13 19 19 C 1.50697 * 109.47179 * 89.99953 * 18 16 14 20 20 H 1.08006 * 120.00322 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00092 * 180.02562 * 19 18 16 22 22 N 1.31517 * 119.99958 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99775 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47043 * 90.00177 * 23 21 19 25 25 H 1.48507 * 109.47205 * 209.99727 * 23 21 19 26 26 H 1.48497 * 109.47460 * 330.00193 * 23 21 19 27 27 C 1.38589 * 120.01799 * 179.97438 * 8 7 6 28 28 H 1.08995 * 109.47575 * 240.00193 * 1 2 3 29 29 H 1.09006 * 109.47190 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47011 * 119.99964 * 1 2 3 31 31 H 1.09001 * 109.47203 * 269.99523 * 3 2 1 32 32 H 1.09006 * 109.47087 * 29.99978 * 3 2 1 33 33 H 1.09000 * 109.47206 * 149.99337 * 3 2 1 34 34 H 1.09005 * 109.47061 * 300.00012 * 6 4 2 35 35 H 1.09001 * 109.47606 * 59.99702 * 6 4 2 36 36 H 1.08004 * 119.95567 * 359.96651 * 9 8 7 37 37 H 1.08001 * 119.93457 * 180.26919 * 10 9 8 38 38 H 1.08003 * 119.98010 * 179.70684 * 11 10 9 39 39 H 0.97003 * 119.99192 * 144.88553 * 13 12 11 40 40 H 1.09004 * 109.46826 * 90.00528 * 17 16 14 41 41 H 1.09007 * 109.46683 * 209.99180 * 17 16 14 42 42 H 1.08988 * 109.47707 * 329.99865 * 17 16 14 43 43 H 1.08998 * 109.46866 * 210.00171 * 18 16 14 44 44 H 1.09002 * 109.47012 * 330.00103 * 18 16 14 45 45 H 0.96995 * 119.99901 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.06130 * 359.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 0.0011 7 8 4.1223 -2.5144 0.0010 8 6 5.4695 -2.6925 0.0009 9 6 6.3155 -1.5920 -0.0046 10 6 7.6854 -1.7715 0.0017 11 6 8.2177 -3.0465 0.0010 12 6 7.3761 -4.1512 0.0010 13 7 7.9152 -5.4426 0.0008 14 6 9.0558 -5.6967 -0.6706 15 8 9.6611 -4.7884 -1.2063 16 7 9.5257 -6.9575 -0.7480 17 6 8.7962 -8.0519 -0.1028 18 6 10.7659 -7.2336 -1.4774 19 6 11.9375 -7.1233 -0.5360 20 1 11.7746 -6.8730 0.5019 21 6 13.2174 -7.3419 -0.9998 22 7 14.2398 -7.2461 -0.1781 23 14 13.4991 -7.7755 -2.7947 24 1 13.6938 -6.5303 -3.5801 25 1 14.7079 -8.6299 -2.9138 26 1 12.3196 -8.5109 -3.3174 27 6 5.9997 -3.9730 0.0014 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.3792 1.5834 -1.0277 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0096 -0.6535 -0.8889 35 1 4.0090 -0.6531 0.8911 36 1 5.9022 -0.5941 -0.0094 37 1 8.3414 -0.9135 0.0018 38 1 9.2889 -3.1841 0.0012 39 1 7.4679 -6.1549 0.4840 40 1 8.0755 -8.4717 -0.8046 41 1 9.4994 -8.8269 0.2027 42 1 8.2712 -7.6718 0.7734 43 1 10.7267 -8.2407 -1.8924 44 1 10.8802 -6.5116 -2.2860 45 1 15.1402 -7.4002 -0.5042 46 1 5.3430 -4.8303 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125840913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:24 Heat of formation + Delta-G solvation = -41.719878 kcal Electronic energy + Delta-G solvation = -27953.132677 eV Core-core repulsion = 23844.869834 eV Total energy + Delta-G solvation = -4108.262844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78322 -40.21198 -39.29685 -37.36317 -36.03121 -35.02943 -34.27575 -32.47687 -31.07991 -29.72248 -29.19674 -28.11789 -27.90625 -26.04848 -25.84935 -23.16377 -22.68183 -21.63577 -19.89251 -19.59744 -18.53194 -17.75882 -17.12717 -16.97602 -16.95831 -16.70797 -16.12692 -15.65672 -15.52894 -15.35732 -14.83304 -14.63794 -14.06160 -13.75722 -13.66098 -13.50795 -13.41634 -13.29573 -13.22016 -13.01549 -12.81498 -12.51588 -12.45497 -12.41458 -12.10142 -11.81953 -11.48622 -11.36025 -11.08479 -10.95501 -10.53091 -10.23404 -10.19317 -10.00174 -9.58107 -9.32576 -9.27507 -8.58983 -8.41161 -7.99200 -7.64579 -6.08829 -4.07758 1.35754 1.54788 2.07805 2.10297 2.93916 3.28921 3.32034 3.36598 3.38551 3.61774 3.96907 4.00905 4.36408 4.38492 4.40066 4.55569 4.60081 4.71672 4.75448 4.88866 4.98913 5.05069 5.07962 5.23524 5.30219 5.36244 5.43883 5.49053 5.58995 5.76230 5.79719 5.84945 6.06028 6.26826 6.30697 6.43457 6.64195 6.67001 6.70332 6.87458 7.03989 7.22451 7.33994 7.45473 7.61002 7.64595 8.41111 8.46948 8.93942 9.10469 9.51208 11.04501 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.001940 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.582309 B =14428.194203 C =14873.697113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.623 5.623 3 C 0.072 3.928 4 C 0.515 3.485 5 O -0.512 6.512 6 C 0.046 3.954 7 O -0.293 6.293 8 C 0.140 3.860 9 C -0.234 4.234 10 C -0.062 4.062 11 C -0.152 4.152 12 C 0.218 3.782 13 N -0.693 5.693 14 C 0.702 3.298 15 O -0.566 6.566 16 N -0.607 5.607 17 C 0.083 3.917 18 C 0.230 3.770 19 C -0.530 4.530 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.266 1.266 27 C -0.183 4.183 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.404 0.596 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.039 0.961 45 H 0.265 0.735 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.704 15.900 1.951 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.359 5.359 3 C -0.071 4.071 4 C 0.301 3.699 5 O -0.385 6.385 6 C -0.033 4.033 7 O -0.205 6.205 8 C 0.095 3.905 9 C -0.254 4.254 10 C -0.081 4.081 11 C -0.172 4.172 12 C 0.121 3.879 13 N -0.343 5.343 14 C 0.403 3.597 15 O -0.442 6.442 16 N -0.342 5.342 17 C -0.062 4.062 18 C 0.109 3.891 19 C -0.569 4.569 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.190 1.190 27 C -0.205 4.205 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.241 0.759 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.456 15.685 1.518 29.939 hybrid contribution 0.175 -0.266 -0.549 0.635 sum -25.282 15.419 0.969 29.629 Atomic orbital electron populations 1.21655 0.78247 1.02484 1.02731 1.47653 1.07392 1.06003 1.74899 1.21962 0.97472 0.85191 1.02482 1.20143 0.89109 0.83654 0.76975 1.90765 1.69829 1.30725 1.47230 1.22429 0.92185 0.84907 1.03796 1.86105 1.19518 1.25760 1.89151 1.18503 0.81195 0.93719 0.97105 1.21070 0.94506 0.97257 1.12582 1.20819 0.93911 0.97059 0.96281 1.21448 1.01907 0.90813 1.03067 1.17178 0.90426 0.84511 0.95746 1.42918 1.27080 1.09712 1.54569 1.15826 0.80041 0.84113 0.79683 1.90887 1.58715 1.43278 1.51272 1.47136 1.26773 1.04284 1.55975 1.21641 0.96904 0.91425 0.96188 1.19632 0.80499 0.96265 0.92669 1.21350 0.89711 1.48245 0.97581 0.90738 1.24851 0.95820 0.94751 0.97586 1.69897 0.98944 1.49547 1.35148 0.86847 0.78068 0.79028 0.85704 1.19869 1.21080 1.19049 1.19930 0.93223 0.95521 1.11828 0.91861 0.90363 0.91862 0.91942 0.90372 0.90771 0.88918 0.88927 0.85970 0.85467 0.83365 0.75860 0.93404 0.89974 0.92773 0.94938 0.94311 0.92555 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.16 59.85 0.61 1.09 16 2 N -0.62 -4.03 3.27 -189.51 -0.62 -4.65 16 3 C 0.07 0.18 10.21 59.85 0.61 0.79 16 4 C 0.51 5.19 7.75 -10.99 -0.09 5.10 16 5 O -0.51 -7.55 16.50 -14.35 -0.24 -7.79 16 6 C 0.05 0.39 3.77 36.01 0.14 0.52 16 7 O -0.29 -3.76 9.67 -39.33 -0.38 -4.14 16 8 C 0.14 1.83 6.68 -39.24 -0.26 1.57 16 9 C -0.23 -2.68 9.04 -39.40 -0.36 -3.03 16 10 C -0.06 -0.81 10.03 -39.63 -0.40 -1.20 16 11 C -0.15 -2.50 8.69 -39.37 -0.34 -2.84 16 12 C 0.22 3.49 6.30 -83.71 -0.53 2.96 16 13 N -0.69 -11.35 5.21 -14.24 -0.07 -11.42 16 14 C 0.70 14.70 8.12 -86.92 -0.71 14.00 16 15 O -0.57 -13.98 13.35 5.29 0.07 -13.91 16 16 N -0.61 -12.54 2.86 -188.75 -0.54 -13.08 16 17 C 0.08 1.24 10.24 59.85 0.61 1.86 16 18 C 0.23 5.61 4.23 -5.20 -0.02 5.59 16 19 C -0.53 -15.16 9.94 -34.44 -0.34 -15.51 16 20 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 23 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 27 C -0.18 -2.59 9.90 -39.25 -0.39 -2.98 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.17 7.80 -51.93 -0.40 -0.23 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.08 0.07 7.92 -51.93 -0.41 -0.34 16 33 H 0.07 0.11 6.44 -51.93 -0.33 -0.22 16 34 H 0.09 0.59 7.61 -51.93 -0.40 0.19 16 35 H 0.09 0.55 6.93 -51.93 -0.36 0.19 16 36 H 0.12 0.96 6.29 -52.48 -0.33 0.63 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 2.87 6.22 -52.48 -0.33 2.54 16 39 H 0.40 5.26 6.52 -40.82 -0.27 5.00 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.27 8.07 -51.92 -0.42 0.85 16 42 H 0.05 0.66 6.30 -51.94 -0.33 0.34 16 43 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 44 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -38.79 382.72 -7.89 -46.69 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.43 Total: 2.58 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -1.56 Total: 9.92 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.46 Total: -55.94 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.55 Total: -25.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.79 -7.89 -46.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125840913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.968 kcal (2) G-P(sol) polarization free energy of solvation -38.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds