Wall clock time and date at job start Tue Mar 31 2020 18:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99795 * 2 1 4 4 C 1.34767 * 120.00046 * 179.97438 * 2 1 3 5 5 O 1.21282 * 120.00043 * 0.02562 * 4 2 1 6 6 C 1.50699 * 120.00209 * 180.02562 * 4 2 1 7 7 O 1.42900 * 109.47565 * 180.02562 * 6 4 2 8 8 C 1.35899 * 117.00239 * 179.97438 * 7 6 4 9 9 C 1.38807 * 120.01974 * 359.73483 * 8 7 6 10 10 C 1.38169 * 120.08020 * 179.69615 * 9 8 7 11 11 C 1.38161 * 120.12416 * 0.59627 * 10 9 8 12 12 C 1.38881 * 120.04214 * 359.67059 * 11 10 9 13 13 N 1.39944 * 120.04050 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00328 * 324.88412 * 13 12 11 15 15 O 1.21583 * 119.99996 * 4.59119 * 14 13 12 16 16 N 1.34779 * 120.00190 * 184.58142 * 14 13 12 17 17 C 1.46503 * 119.99394 * 0.02562 * 16 14 13 18 18 C 1.46494 * 120.00262 * 180.02562 * 16 14 13 19 19 C 1.50697 * 109.47179 * 89.99953 * 18 16 14 20 20 H 1.08006 * 120.00322 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00092 * 180.02562 * 19 18 16 22 22 N 1.31517 * 119.99958 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99775 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47043 * 90.00177 * 23 21 19 25 25 H 1.48507 * 109.47205 * 209.99727 * 23 21 19 26 26 H 1.48497 * 109.47460 * 330.00193 * 23 21 19 27 27 C 1.38589 * 120.01799 * 179.97438 * 8 7 6 28 28 H 1.08995 * 109.47575 * 240.00193 * 1 2 3 29 29 H 1.09006 * 109.47190 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47011 * 119.99964 * 1 2 3 31 31 H 1.09001 * 109.47203 * 269.99523 * 3 2 1 32 32 H 1.09006 * 109.47087 * 29.99978 * 3 2 1 33 33 H 1.09000 * 109.47206 * 149.99337 * 3 2 1 34 34 H 1.09005 * 109.47061 * 300.00012 * 6 4 2 35 35 H 1.09001 * 109.47606 * 59.99702 * 6 4 2 36 36 H 1.08004 * 119.95567 * 359.96651 * 9 8 7 37 37 H 1.08001 * 119.93457 * 180.26919 * 10 9 8 38 38 H 1.08003 * 119.98010 * 179.70684 * 11 10 9 39 39 H 0.97003 * 119.99192 * 144.88553 * 13 12 11 40 40 H 1.09004 * 109.46826 * 90.00528 * 17 16 14 41 41 H 1.09007 * 109.46683 * 209.99180 * 17 16 14 42 42 H 1.08988 * 109.47707 * 329.99865 * 17 16 14 43 43 H 1.08998 * 109.46866 * 210.00171 * 18 16 14 44 44 H 1.09002 * 109.47012 * 330.00103 * 18 16 14 45 45 H 0.96995 * 119.99901 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.06130 * 359.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 0.0011 7 8 4.1223 -2.5144 0.0010 8 6 5.4695 -2.6925 0.0009 9 6 6.3155 -1.5920 -0.0046 10 6 7.6854 -1.7715 0.0017 11 6 8.2177 -3.0465 0.0010 12 6 7.3761 -4.1512 0.0010 13 7 7.9152 -5.4426 0.0008 14 6 9.0558 -5.6967 -0.6706 15 8 9.6611 -4.7884 -1.2063 16 7 9.5257 -6.9575 -0.7480 17 6 8.7962 -8.0519 -0.1028 18 6 10.7659 -7.2336 -1.4774 19 6 11.9375 -7.1233 -0.5360 20 1 11.7746 -6.8730 0.5019 21 6 13.2174 -7.3419 -0.9998 22 7 14.2398 -7.2461 -0.1781 23 14 13.4991 -7.7755 -2.7947 24 1 13.6938 -6.5303 -3.5801 25 1 14.7079 -8.6299 -2.9138 26 1 12.3196 -8.5109 -3.3174 27 6 5.9997 -3.9730 0.0014 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.3792 1.5834 -1.0277 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0096 -0.6535 -0.8889 35 1 4.0090 -0.6531 0.8911 36 1 5.9022 -0.5941 -0.0094 37 1 8.3414 -0.9135 0.0018 38 1 9.2889 -3.1841 0.0012 39 1 7.4679 -6.1549 0.4840 40 1 8.0755 -8.4717 -0.8046 41 1 9.4994 -8.8269 0.2027 42 1 8.2712 -7.6718 0.7734 43 1 10.7267 -8.2407 -1.8924 44 1 10.8802 -6.5116 -2.2860 45 1 15.1402 -7.4002 -0.5042 46 1 5.3430 -4.8303 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125840913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:24 Heat of formation + Delta-G solvation = -69.522211 kcal Electronic energy + Delta-G solvation = -27954.338277 eV Core-core repulsion = 23844.869834 eV Total energy + Delta-G solvation = -4109.468443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86166 -41.28843 -40.31303 -38.48354 -36.70662 -36.62509 -35.67656 -34.57476 -31.99015 -30.97445 -30.17294 -29.65560 -28.32099 -27.43745 -26.47022 -24.87235 -23.75852 -22.97880 -21.05224 -20.53951 -19.61516 -19.14128 -19.04084 -18.01016 -17.62009 -17.53820 -17.29663 -16.89168 -16.58046 -16.37952 -16.13902 -15.93195 -15.63627 -15.12062 -14.67449 -14.55907 -14.46704 -14.28344 -14.09041 -13.88408 -13.69693 -13.59145 -13.52557 -13.41956 -13.26906 -12.99111 -12.80251 -12.75606 -12.42516 -12.29751 -12.05111 -12.02731 -11.74010 -11.32220 -10.98459 -10.95494 -10.81321 -9.78232 -9.62583 -9.39298 -8.95550 -8.32645 -6.37905 0.27803 0.46022 1.33793 1.38735 1.39345 1.41418 1.47407 1.71910 2.11645 2.32535 2.52954 2.83274 2.99174 3.03989 3.38996 3.84321 3.99658 4.07264 4.14740 4.23775 4.29270 4.30250 4.34008 4.42356 4.49192 4.53338 4.60193 4.71007 4.74468 4.77140 4.87185 4.90179 4.91898 4.96620 5.23834 5.28595 5.34674 5.41942 5.45133 5.54516 5.58008 5.86145 5.97401 6.16728 6.26742 6.39412 6.63064 6.94752 7.00232 7.23487 7.54206 8.84326 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.001940 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.582309 B =14428.194203 C =14873.697113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.615 5.615 3 C 0.061 3.939 4 C 0.506 3.494 5 O -0.575 6.575 6 C 0.038 3.962 7 O -0.315 6.315 8 C 0.142 3.858 9 C -0.214 4.214 10 C -0.058 4.058 11 C -0.182 4.182 12 C 0.195 3.805 13 N -0.677 5.677 14 C 0.695 3.305 15 O -0.613 6.613 16 N -0.617 5.617 17 C 0.076 3.924 18 C 0.240 3.760 19 C -0.537 4.537 20 H 0.027 0.973 21 C 0.011 3.989 22 N -0.945 5.945 23 Si 0.949 3.051 24 H -0.276 1.276 25 H -0.275 1.275 26 H -0.236 1.236 27 C -0.186 4.186 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.109 0.891 39 H 0.419 0.581 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.268 0.732 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.987 17.704 0.941 33.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.350 5.350 3 C -0.080 4.080 4 C 0.293 3.707 5 O -0.454 6.454 6 C -0.039 4.039 7 O -0.228 6.228 8 C 0.096 3.904 9 C -0.233 4.233 10 C -0.077 4.077 11 C -0.203 4.203 12 C 0.099 3.901 13 N -0.328 5.328 14 C 0.397 3.603 15 O -0.492 6.492 16 N -0.351 5.351 17 C -0.067 4.067 18 C 0.117 3.883 19 C -0.576 4.576 20 H 0.046 0.954 21 C -0.187 4.187 22 N -0.585 5.585 23 Si 0.772 3.228 24 H -0.202 1.202 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.208 4.208 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.187 0.813 37 H 0.169 0.831 38 H 0.127 0.873 39 H 0.259 0.741 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.820 17.525 0.552 32.884 hybrid contribution 0.733 -0.622 -0.107 0.968 sum -27.087 16.903 0.445 31.931 Atomic orbital electron populations 1.21785 0.77888 1.04437 1.01552 1.47822 1.07969 1.06448 1.72716 1.22311 0.98183 0.83572 1.03939 1.20573 0.89899 0.83799 0.76392 1.90737 1.71014 1.33036 1.50620 1.22803 0.91124 0.83342 1.06650 1.86087 1.19016 1.28730 1.88963 1.18597 0.81805 0.93735 0.96269 1.21466 0.93279 0.98941 1.09645 1.21075 0.95264 0.96226 0.95129 1.21318 1.00178 0.92983 1.05834 1.17304 0.91218 0.83916 0.97675 1.42596 1.25703 1.10705 1.53771 1.16039 0.80845 0.83670 0.79716 1.90848 1.60398 1.44700 1.53302 1.47125 1.26128 1.05646 1.56200 1.21951 0.97044 0.89847 0.97811 1.19308 0.80666 0.96788 0.91526 1.21571 0.91849 1.47855 0.96305 0.95441 1.25851 0.95336 0.94545 1.02978 1.70052 0.99631 1.51055 1.37782 0.85700 0.79272 0.78928 0.78936 1.20203 1.20038 1.15949 1.19996 0.92278 0.96875 1.11637 0.93033 0.86751 0.93204 0.90627 0.88291 0.89206 0.86017 0.85615 0.81321 0.83079 0.87337 0.74067 0.90084 0.90567 0.90145 0.92532 0.96018 0.92270 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.16 127.77 1.30 2.06 16 2 N -0.62 -6.36 3.27 -871.88 -2.85 -9.21 16 3 C 0.06 0.04 10.21 127.77 1.30 1.35 16 4 C 0.51 9.31 7.75 87.66 0.68 9.99 16 5 O -0.57 -17.08 16.50 16.00 0.26 -16.81 16 6 C 0.04 0.52 3.77 71.24 0.27 0.79 16 7 O -0.31 -7.38 9.67 -73.38 -0.71 -8.09 16 8 C 0.14 3.38 6.68 22.49 0.15 3.53 16 9 C -0.21 -4.13 9.04 22.39 0.20 -3.93 16 10 C -0.06 -1.43 10.03 22.23 0.22 -1.20 16 11 C -0.18 -6.18 8.69 22.41 0.19 -5.98 16 12 C 0.19 6.29 6.30 38.13 0.24 6.53 16 13 N -0.68 -22.51 5.21 -317.23 -1.65 -24.16 16 14 C 0.70 30.08 8.12 179.06 1.45 31.53 16 15 O -0.61 -31.91 13.35 -3.98 -0.05 -31.96 16 16 N -0.62 -25.74 2.86 -869.33 -2.48 -28.22 16 17 C 0.08 2.19 10.24 127.77 1.31 3.50 16 18 C 0.24 11.78 4.23 85.63 0.36 12.15 16 19 C -0.54 -31.87 9.94 25.60 0.25 -31.62 16 20 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 21 C 0.01 0.65 5.47 84.66 0.46 1.11 16 22 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 23 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 27 C -0.19 -5.10 9.90 22.49 0.22 -4.87 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.15 7.80 -2.38 -0.02 0.13 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.10 -0.29 7.92 -2.38 -0.02 -0.31 16 33 H 0.09 -0.19 6.44 -2.39 -0.02 -0.21 16 34 H 0.12 0.94 7.61 -2.38 -0.02 0.92 16 35 H 0.13 0.85 6.93 -2.39 -0.02 0.84 16 36 H 0.17 1.62 6.29 -2.91 -0.02 1.60 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 38 H 0.11 4.55 6.22 -2.91 -0.02 4.54 16 39 H 0.42 10.73 6.52 -92.71 -0.60 10.12 16 40 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.08 2.31 8.07 -2.38 -0.02 2.29 16 42 H 0.08 1.86 6.30 -2.39 -0.02 1.85 16 43 H 0.06 2.51 7.13 -2.39 -0.02 2.49 16 44 H 0.02 1.14 6.85 -2.39 -0.02 1.13 16 45 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -92.43 382.72 3.67 -88.76 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.35 Total: 18.11 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 8.63 Total: 24.92 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.69 Total: -121.37 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -0.50 Total: -56.86 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -92.43 3.67 -88.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125840913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.236 kcal (2) G-P(sol) polarization free energy of solvation -92.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds