Wall clock time and date at job start Tue Mar 31 2020 18:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.40102 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99522 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99546 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00381 * 0.02562 * 14 13 12 17 17 C 1.46501 * 119.99750 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46838 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47255 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47596 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99368 * 359.97438 * 20 19 18 22 22 C 1.37865 * 120.00162 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00302 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47194 * 90.00164 * 24 22 20 26 26 H 1.48495 * 109.47163 * 210.00132 * 24 22 20 27 27 H 1.48505 * 109.47200 * 330.00388 * 24 22 20 28 28 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 29 29 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 30 30 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 32 32 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 33 33 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 36 36 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 37 37 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 38 38 H 0.97001 * 119.99835 * 0.02562 * 13 12 10 39 39 H 0.96997 * 120.00020 * 359.97438 * 16 14 13 40 40 H 1.08999 * 109.47062 * 299.99234 * 17 16 14 41 41 H 1.09002 * 109.47375 * 59.99888 * 17 16 14 42 42 H 1.09003 * 109.47159 * 299.99791 * 18 17 16 43 43 H 1.08994 * 109.47456 * 59.99800 * 18 17 16 44 44 H 1.09003 * 109.46856 * 299.99964 * 19 18 17 45 45 H 1.08993 * 109.47575 * 59.99463 * 19 18 17 46 46 H 0.97006 * 119.99740 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 7 5.2871 -2.0441 -2.9759 14 6 5.9933 -3.1656 -3.2208 15 8 6.1305 -3.5604 -4.3626 16 7 6.5473 -3.8495 -2.2001 17 6 7.3154 -5.0683 -2.4665 18 6 7.8314 -5.6446 -1.1465 19 6 8.6341 -6.9171 -1.4246 20 6 9.1430 -7.4844 -0.1245 21 1 8.9168 -6.9868 0.8070 22 6 9.8971 -8.6385 -0.1242 23 7 10.1729 -9.2441 -1.2586 24 14 10.5284 -9.3413 1.4873 25 1 9.5284 -10.2903 2.0390 26 1 11.8086 -10.0548 1.2484 27 1 10.7501 -8.2375 2.4557 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0010 32 1 1.3339 4.5114 0.0026 33 1 3.7920 4.6381 -0.0024 34 1 5.1344 2.5754 -0.0023 35 1 5.2326 0.2265 0.4336 36 1 3.7469 -0.7414 0.5899 37 1 5.5282 -2.0811 -0.9257 38 1 4.8886 -1.5517 -3.7105 39 1 6.4382 -3.5344 -1.2893 40 1 6.6752 -5.8011 -2.9576 41 1 8.1597 -4.8315 -3.1139 42 1 8.4718 -4.9116 -0.6556 43 1 6.9874 -5.8813 -0.4987 44 1 7.9941 -7.6502 -1.9156 45 1 9.4781 -6.6800 -2.0722 46 1 10.7038 -10.0560 -1.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170886130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:17 Heat of formation + Delta-G solvation = -51.234791 kcal Electronic energy + Delta-G solvation = -27476.726852 eV Core-core repulsion = 23368.051411 eV Total energy + Delta-G solvation = -4108.675441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95646 -40.32329 -39.19903 -37.72908 -35.81743 -35.53905 -33.46744 -33.29894 -31.46615 -30.81944 -30.47882 -28.18439 -27.32783 -26.67333 -23.36592 -22.71151 -22.49624 -21.22619 -21.00668 -20.57525 -18.94324 -18.33493 -17.94063 -16.77861 -16.54497 -16.21745 -16.11278 -15.90006 -15.88571 -15.23900 -15.19728 -14.83936 -14.53670 -14.34862 -14.21825 -13.99581 -13.95224 -13.54712 -12.88533 -12.64502 -12.42050 -12.32144 -11.94893 -11.87133 -11.75831 -11.50287 -11.37565 -11.26309 -10.93173 -10.82017 -10.66988 -10.56126 -10.25023 -9.92220 -9.50792 -9.25337 -9.16286 -9.02767 -8.52152 -8.41025 -8.39667 -6.04295 -4.07705 0.87644 1.08988 1.74166 2.23369 2.89071 3.05525 3.15500 3.28851 3.35560 3.37691 3.38750 4.17199 4.28546 4.37944 4.41803 4.55000 4.70402 4.76879 4.81828 4.85910 4.92115 5.05413 5.11195 5.14242 5.31560 5.32162 5.56128 5.59482 5.73326 5.92056 6.02089 6.09783 6.15451 6.24520 6.35000 6.39377 6.48709 6.54627 6.81858 6.94505 6.98855 7.14069 7.56790 7.60389 7.72527 7.93977 8.12295 8.34235 8.49294 8.98822 9.56653 11.06859 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.001826 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.195550 B =15329.535792 C =16028.587185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.146 3.854 4 C -0.210 4.210 5 C -0.078 4.078 6 C -0.158 4.158 7 C -0.067 4.067 8 C -0.102 4.102 9 C -0.084 4.084 10 C 0.519 3.481 11 O -0.527 6.527 12 N -0.530 5.530 13 N -0.537 5.537 14 C 0.709 3.291 15 O -0.573 6.573 16 N -0.738 5.738 17 C 0.132 3.868 18 C -0.121 4.121 19 C 0.023 3.977 20 C -0.523 4.523 21 H 0.055 0.945 22 C 0.057 3.943 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.421 0.579 38 H 0.439 0.561 39 H 0.389 0.611 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 26.125 6.459 32.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.100 3.900 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.176 4.176 7 C -0.085 4.085 8 C -0.103 4.103 9 C -0.125 4.125 10 C 0.306 3.694 11 O -0.400 6.400 12 N -0.282 5.282 13 N -0.295 5.295 14 C 0.408 3.592 15 O -0.447 6.447 16 N -0.394 5.394 17 C 0.009 3.991 18 C -0.159 4.159 19 C -0.014 4.014 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.531 5.531 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.262 0.738 38 H 0.285 0.715 39 H 0.222 0.778 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.615 25.762 4.938 32.165 hybrid contribution 0.060 -0.220 1.347 1.366 sum -18.555 25.542 6.285 32.190 Atomic orbital electron populations 1.23073 0.78168 1.04162 1.01306 1.86058 1.21539 1.26761 1.88324 1.18777 0.91623 0.84386 0.95191 1.21200 1.00028 0.92348 1.09251 1.20955 0.94755 0.96945 0.96942 1.21018 0.93910 0.98379 1.04278 1.20878 0.99958 0.90971 0.96656 1.18507 0.90123 0.94299 1.07376 1.20383 1.02101 0.96872 0.93111 1.20804 0.77601 0.78922 0.92112 1.90747 1.47453 1.55870 1.45976 1.44968 1.56618 1.27541 0.99112 1.44650 1.59249 1.27460 0.98132 1.15821 0.78702 0.79115 0.85553 1.91033 1.65354 1.68074 1.20201 1.45430 1.57101 1.29140 1.07767 1.21625 0.94503 0.83273 0.99706 1.21907 0.99912 1.00142 0.93932 1.19032 0.94721 0.90318 0.97349 1.21181 1.32814 1.09099 0.93045 0.92639 1.25031 0.96227 0.96959 0.96265 1.69965 1.38880 1.18970 1.25331 0.86580 0.78326 0.79171 0.83807 1.20671 1.21214 1.19908 0.92607 0.92584 0.88096 0.85458 0.85821 0.85757 0.85255 0.87203 0.86896 0.73816 0.71522 0.77754 0.91526 0.91524 0.92663 0.92662 0.96175 0.96163 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -2.87 9.63 -19.42 -0.19 -3.05 16 3 C 0.15 1.36 6.66 -39.22 -0.26 1.10 16 4 C -0.21 -1.66 9.04 -39.43 -0.36 -2.02 16 5 C -0.08 -0.56 10.04 -39.60 -0.40 -0.95 16 6 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 7 C -0.07 -0.52 9.68 -39.61 -0.38 -0.90 16 8 C -0.10 -0.89 4.39 -104.48 -0.46 -1.35 16 9 C -0.08 -0.58 5.55 -29.04 -0.16 -0.74 16 10 C 0.52 5.21 7.94 -10.98 -0.09 5.12 16 11 O -0.53 -7.36 15.87 5.56 0.09 -7.27 16 12 N -0.53 -4.89 6.26 31.22 0.20 -4.70 16 13 N -0.54 -6.66 6.26 27.63 0.17 -6.48 16 14 C 0.71 10.76 8.68 -86.92 -0.75 10.00 16 15 O -0.57 -11.14 17.18 5.28 0.09 -11.05 16 16 N -0.74 -10.04 5.52 -65.22 -0.36 -10.40 16 17 C 0.13 2.22 5.67 -4.04 -0.02 2.20 16 18 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 19 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 20 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 21 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 24 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 32 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.11 0.43 8.05 -51.93 -0.42 0.01 16 36 H 0.11 0.64 7.69 -51.93 -0.40 0.24 16 37 H 0.42 2.67 6.70 -182.60 -1.22 1.45 16 38 H 0.44 5.67 8.10 -182.59 -1.48 4.20 16 39 H 0.39 3.96 6.39 -40.82 -0.26 3.70 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -36.54 392.96 -10.02 -46.56 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.68 Total: 2.94 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.98 Total: -2.90 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.74 Total: -47.23 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.01 Total: -21.37 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.54 -10.02 -46.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170886130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.672 kcal (2) G-P(sol) polarization free energy of solvation -36.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds