Wall clock time and date at job start Tue Mar 31 2020 18:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.40102 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99522 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99546 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00381 * 0.02562 * 14 13 12 17 17 C 1.46501 * 119.99750 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46838 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47255 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47596 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99368 * 359.97438 * 20 19 18 22 22 C 1.37865 * 120.00162 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00302 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47194 * 90.00164 * 24 22 20 26 26 H 1.48495 * 109.47163 * 210.00132 * 24 22 20 27 27 H 1.48505 * 109.47200 * 330.00388 * 24 22 20 28 28 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 29 29 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 30 30 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 32 32 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 33 33 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 36 36 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 37 37 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 38 38 H 0.97001 * 119.99835 * 0.02562 * 13 12 10 39 39 H 0.96997 * 120.00020 * 359.97438 * 16 14 13 40 40 H 1.08999 * 109.47062 * 299.99234 * 17 16 14 41 41 H 1.09002 * 109.47375 * 59.99888 * 17 16 14 42 42 H 1.09003 * 109.47159 * 299.99791 * 18 17 16 43 43 H 1.08994 * 109.47456 * 59.99800 * 18 17 16 44 44 H 1.09003 * 109.46856 * 299.99964 * 19 18 17 45 45 H 1.08993 * 109.47575 * 59.99463 * 19 18 17 46 46 H 0.97006 * 119.99740 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 7 5.2871 -2.0441 -2.9759 14 6 5.9933 -3.1656 -3.2208 15 8 6.1305 -3.5604 -4.3626 16 7 6.5473 -3.8495 -2.2001 17 6 7.3154 -5.0683 -2.4665 18 6 7.8314 -5.6446 -1.1465 19 6 8.6341 -6.9171 -1.4246 20 6 9.1430 -7.4844 -0.1245 21 1 8.9168 -6.9868 0.8070 22 6 9.8971 -8.6385 -0.1242 23 7 10.1729 -9.2441 -1.2586 24 14 10.5284 -9.3413 1.4873 25 1 9.5284 -10.2903 2.0390 26 1 11.8086 -10.0548 1.2484 27 1 10.7501 -8.2375 2.4557 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0010 32 1 1.3339 4.5114 0.0026 33 1 3.7920 4.6381 -0.0024 34 1 5.1344 2.5754 -0.0023 35 1 5.2326 0.2265 0.4336 36 1 3.7469 -0.7414 0.5899 37 1 5.5282 -2.0811 -0.9257 38 1 4.8886 -1.5517 -3.7105 39 1 6.4382 -3.5344 -1.2893 40 1 6.6752 -5.8011 -2.9576 41 1 8.1597 -4.8315 -3.1139 42 1 8.4718 -4.9116 -0.6556 43 1 6.9874 -5.8813 -0.4987 44 1 7.9941 -7.6502 -1.9156 45 1 9.4781 -6.6800 -2.0722 46 1 10.7038 -10.0560 -1.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170886130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:16 Heat of formation + Delta-G solvation = -77.456213 kcal Electronic energy + Delta-G solvation = -27477.863899 eV Core-core repulsion = 23368.051411 eV Total energy + Delta-G solvation = -4109.812487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76452 -41.17932 -40.14826 -38.27222 -37.04868 -36.84339 -35.14432 -34.08273 -32.98164 -31.95430 -31.01246 -28.81084 -28.42550 -27.81033 -25.11592 -23.39436 -23.03131 -22.43514 -22.21430 -21.71156 -20.06157 -18.93461 -18.83758 -18.41745 -17.37239 -17.22183 -17.03990 -16.78363 -16.54503 -16.51135 -16.22944 -16.15816 -15.54017 -15.51391 -15.31034 -15.01752 -14.59975 -14.24747 -14.06542 -13.72166 -13.62517 -13.40873 -13.14776 -12.85897 -12.75043 -12.52672 -12.48294 -12.35483 -12.23336 -11.99192 -11.95191 -11.74534 -11.64343 -11.40981 -11.22036 -11.14733 -10.52013 -10.31682 -9.80058 -9.40124 -9.07965 -8.16209 -6.27237 0.29837 0.53202 0.85486 1.42525 1.44674 1.45604 1.56380 1.93624 1.96633 2.39938 2.44884 2.81862 3.18017 3.50342 3.66602 3.89994 4.03268 4.13153 4.15287 4.26227 4.27518 4.37481 4.37877 4.46474 4.58326 4.58896 4.66805 4.72212 4.84115 4.94100 4.98818 5.09164 5.19441 5.30815 5.35450 5.40055 5.50301 5.53308 5.59041 5.62725 5.75429 5.88326 5.89341 6.25362 6.26770 6.46082 6.61675 6.90791 7.18833 7.35509 7.42359 8.95705 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.001826 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.195550 B =15329.535792 C =16028.587185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.123 3.877 4 C -0.222 4.222 5 C -0.086 4.086 6 C -0.167 4.167 7 C -0.077 4.077 8 C -0.122 4.122 9 C -0.077 4.077 10 C 0.522 3.478 11 O -0.569 6.569 12 N -0.518 5.518 13 N -0.532 5.532 14 C 0.711 3.289 15 O -0.620 6.620 16 N -0.722 5.722 17 C 0.145 3.855 18 C -0.101 4.101 19 C 0.021 3.979 20 C -0.537 4.537 21 H 0.069 0.931 22 C -0.005 4.005 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.274 1.274 26 H -0.288 1.288 27 H -0.258 1.258 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.127 0.873 37 H 0.436 0.564 38 H 0.438 0.562 39 H 0.409 0.591 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.072 0.928 44 H -0.008 1.008 45 H -0.007 1.007 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.948 27.552 9.227 34.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.246 6.246 3 C 0.078 3.922 4 C -0.241 4.241 5 C -0.104 4.104 6 C -0.185 4.185 7 C -0.095 4.095 8 C -0.124 4.124 9 C -0.117 4.117 10 C 0.310 3.690 11 O -0.445 6.445 12 N -0.272 5.272 13 N -0.287 5.287 14 C 0.410 3.590 15 O -0.497 6.497 16 N -0.379 5.379 17 C 0.021 3.979 18 C -0.139 4.139 19 C -0.016 4.016 20 C -0.576 4.576 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.791 3.209 25 H -0.200 1.200 26 H -0.214 1.214 27 H -0.182 1.182 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.280 0.720 38 H 0.283 0.717 39 H 0.246 0.754 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.944 27.222 7.781 34.065 hybrid contribution 0.085 -0.583 0.469 0.753 sum -18.859 26.639 8.250 33.665 Atomic orbital electron populations 1.23266 0.76895 1.05200 1.01987 1.86011 1.23029 1.27064 1.88523 1.19094 0.92309 0.84805 0.95992 1.21474 1.00910 0.92440 1.09242 1.21295 0.95206 0.97535 0.96332 1.21360 0.94180 0.99226 1.03745 1.21205 1.01065 0.90899 0.96303 1.18827 0.90363 0.95348 1.07838 1.20489 1.03935 0.96496 0.90812 1.21483 0.76360 0.78181 0.92996 1.90736 1.49119 1.57128 1.47508 1.45042 1.56644 1.27619 0.97878 1.44411 1.58012 1.26405 0.99828 1.15800 0.78758 0.79524 0.84938 1.91004 1.67029 1.69526 1.22162 1.44997 1.56331 1.27974 1.08622 1.21224 0.94062 0.84067 0.98535 1.21607 0.99878 0.97563 0.94847 1.18959 0.94130 0.92607 0.95947 1.21688 1.32351 1.09220 0.94294 0.91240 1.26021 0.96664 0.97626 0.99952 1.70118 1.39965 1.19574 1.27913 0.85431 0.77460 0.78657 0.79376 1.19974 1.21372 1.18230 0.91167 0.92653 0.86936 0.84154 0.83766 0.83899 0.83479 0.83700 0.85463 0.71989 0.71691 0.75380 0.92989 0.92909 0.90866 0.90939 0.98932 0.98872 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -5.83 9.63 -92.39 -0.89 -6.72 16 3 C 0.12 2.20 6.66 22.51 0.15 2.35 16 4 C -0.22 -3.34 9.04 22.37 0.20 -3.13 16 5 C -0.09 -1.11 10.04 22.26 0.22 -0.89 16 6 C -0.17 -2.15 10.04 22.28 0.22 -1.93 16 7 C -0.08 -1.06 9.68 22.25 0.22 -0.85 16 8 C -0.12 -1.97 4.39 -19.77 -0.09 -2.06 16 9 C -0.08 -0.87 5.55 29.10 0.16 -0.71 16 10 C 0.52 9.58 7.94 87.65 0.70 10.28 16 11 O -0.57 -15.55 15.87 -3.02 -0.05 -15.60 16 12 N -0.52 -8.46 6.26 -173.53 -1.09 -9.54 16 13 N -0.53 -12.63 6.26 -184.74 -1.16 -13.79 16 14 C 0.71 21.05 8.68 179.06 1.55 22.61 16 15 O -0.62 -24.40 17.18 -4.02 -0.07 -24.46 16 16 N -0.72 -18.42 5.52 -478.53 -2.64 -21.07 16 17 C 0.15 4.82 5.67 86.38 0.49 5.31 16 18 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 19 C 0.02 1.06 4.97 29.85 0.15 1.21 16 20 C -0.54 -28.89 9.11 25.60 0.23 -28.65 16 21 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 22 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 23 N -0.94 -56.26 13.29 21.44 0.28 -55.97 16 24 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 28 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.05 0.57 7.66 -2.39 -0.02 0.55 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 1.54 6.30 -2.91 -0.02 1.52 16 32 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.15 0.58 8.05 -2.38 -0.02 0.56 16 36 H 0.13 1.10 7.69 -2.38 -0.02 1.08 16 37 H 0.44 4.16 6.70 -213.32 -1.43 2.73 16 38 H 0.44 11.21 8.10 -213.32 -1.73 9.48 16 39 H 0.41 7.08 6.39 -92.71 -0.59 6.48 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -80.98 392.96 -0.36 -81.34 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -2.72 Total: 19.42 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.95 Total: 1.64 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -4.60 Total: -100.37 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.01 Total: -46.79 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -80.98 -0.36 -81.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170886130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.883 kcal (2) G-P(sol) polarization free energy of solvation -80.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds