Wall clock time and date at job start Tue Mar 31 2020 18:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00501 * 2 1 4 4 O 1.21586 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.47612 * 120.00382 * 179.97438 * 3 2 1 6 6 C 1.39717 * 120.06050 * 359.97438 * 5 3 2 7 7 C 1.37798 * 120.03222 * 180.02562 * 6 5 3 8 8 C 1.38811 * 120.16556 * 359.97438 * 7 6 5 9 9 O 1.35791 * 119.93713 * 180.27880 * 8 7 6 10 10 C 1.42905 * 116.99861 * 359.73394 * 9 8 7 11 11 C 1.39526 * 120.12738 * 0.02562 * 8 7 6 12 12 N 1.40188 * 120.01720 * 180.02562 * 11 8 7 13 13 C 1.34781 * 119.99789 * 204.77735 * 12 11 8 14 14 O 1.21587 * 120.00054 * 5.63115 * 13 12 11 15 15 N 1.34781 * 119.99677 * 185.62742 * 13 12 11 16 16 C 1.46501 * 119.99474 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46784 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46963 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47109 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99774 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00041 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99788 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47441 * 59.99922 * 23 21 19 25 25 H 1.48507 * 109.46795 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47043 * 299.99250 * 23 21 19 27 27 C 1.38285 * 119.96535 * 359.97438 * 11 8 7 28 28 H 1.09004 * 109.46953 * 59.99650 * 1 2 3 29 29 H 1.08993 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47211 * 300.00352 * 1 2 3 31 31 H 0.97002 * 120.00019 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.98397 * 0.02562 * 6 5 3 33 33 H 1.08009 * 119.91916 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.46867 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.46736 * 299.99104 * 10 9 8 36 36 H 1.08994 * 109.47329 * 59.99551 * 10 9 8 37 37 H 0.96998 * 120.00507 * 24.77010 * 12 11 8 38 38 H 0.96999 * 120.00458 * 0.02562 * 15 13 12 39 39 H 1.08995 * 109.47487 * 300.00071 * 16 15 13 40 40 H 1.09006 * 109.47215 * 60.00620 * 16 15 13 41 41 H 1.09003 * 109.46838 * 299.99934 * 17 16 15 42 42 H 1.08997 * 109.46997 * 59.99932 * 17 16 15 43 43 H 1.09003 * 109.47079 * 299.99528 * 18 17 16 44 44 H 1.08997 * 109.47530 * 60.00000 * 18 17 16 45 45 H 0.96996 * 120.00414 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.08378 * 179.97438 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2202 0.0005 5 6 3.6151 1.1671 0.0006 6 6 4.3149 -0.0422 0.0017 7 6 5.6929 -0.0415 0.0027 8 6 6.3898 1.1589 0.0022 9 8 7.7477 1.1542 -0.0025 10 6 8.3920 -0.1214 -0.0008 11 6 5.6978 2.3705 0.0011 12 7 6.4040 3.5815 0.0000 13 6 5.8280 4.6979 0.4882 14 8 4.7375 4.6356 1.0223 15 7 6.4609 5.8834 0.3844 16 6 5.8344 7.0969 0.9146 17 6 6.7543 8.2947 0.6689 18 6 6.1004 9.5620 1.2231 19 6 7.0061 10.7419 0.9806 20 1 7.9535 10.6017 0.4815 21 6 6.6257 12.0000 1.3969 22 7 5.4722 12.1706 2.0051 23 14 7.7487 13.4623 1.0969 24 1 7.9763 13.6206 -0.3620 25 1 7.1140 14.6924 1.6347 26 1 9.0483 13.2365 1.7791 27 6 4.3150 2.3761 0.0000 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.7756 -0.9779 0.0017 33 1 6.2320 -0.9774 0.0031 34 1 9.4731 0.0176 -0.0045 35 1 8.1003 -0.6745 0.8921 36 1 8.0941 -0.6802 -0.8879 37 1 7.3072 3.6160 -0.3519 38 1 7.3307 5.9331 -0.0419 39 1 4.8810 7.2626 0.4130 40 1 5.6664 6.9811 1.9853 41 1 7.7079 8.1292 1.1703 42 1 6.9220 8.4104 -0.4019 43 1 5.1466 9.7277 0.7221 44 1 5.9330 9.4461 2.2939 45 1 5.2047 13.0557 2.2983 46 1 3.7774 3.3128 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171373086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:02 Heat of formation + Delta-G solvation = -77.478253 kcal Electronic energy + Delta-G solvation = -27749.796990 eV Core-core repulsion = 23639.983547 eV Total energy + Delta-G solvation = -4109.813443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18072 -39.86387 -39.56185 -37.36728 -35.63801 -34.91568 -34.64680 -33.32095 -31.35827 -30.80304 -29.85516 -28.15343 -26.85618 -26.42224 -23.72251 -23.35673 -22.55449 -20.93611 -20.71667 -20.30074 -19.04724 -18.17093 -18.04157 -16.89768 -16.56746 -16.22258 -16.19580 -15.68596 -15.50641 -15.37078 -14.89351 -14.47047 -14.40646 -14.33294 -14.14160 -13.96828 -13.60350 -13.36076 -13.11403 -12.84191 -12.57218 -12.33759 -12.25332 -11.81002 -11.77895 -11.66052 -11.44318 -10.88667 -10.71775 -10.67281 -10.60115 -10.14834 -9.99990 -9.83405 -9.42510 -9.41438 -9.11466 -8.93139 -8.78520 -8.34364 -8.00856 -5.98889 -4.02172 0.61582 1.03140 2.53055 2.61005 2.79239 2.96688 3.23349 3.33982 3.38711 3.40553 3.68670 4.17323 4.35797 4.46618 4.50508 4.51581 4.67437 4.71668 4.91061 4.93455 5.04930 5.17072 5.23189 5.36598 5.47065 5.51786 5.64137 5.74425 5.78529 5.82476 6.00862 6.08369 6.18993 6.22632 6.47468 6.56419 6.63514 6.77157 6.95748 6.99019 7.03695 7.21292 7.66419 7.79442 7.99109 7.99835 8.03722 8.40318 8.59704 9.04277 9.61728 11.12349 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002081 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.375842 B =13453.654839 C =15394.875897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.736 5.736 3 C 0.560 3.440 4 O -0.525 6.525 5 C -0.152 4.152 6 C -0.072 4.072 7 C -0.195 4.195 8 C 0.117 3.883 9 O -0.315 6.315 10 C 0.028 3.972 11 C 0.145 3.855 12 N -0.680 5.680 13 C 0.697 3.303 14 O -0.569 6.569 15 N -0.733 5.733 16 C 0.133 3.867 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.038 4.038 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.399 0.601 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.411 0.589 38 H 0.396 0.604 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -34.374 -6.514 35.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.348 3.652 4 O -0.401 6.401 5 C -0.156 4.156 6 C -0.092 4.092 7 C -0.214 4.214 8 C 0.069 3.931 9 O -0.228 6.228 10 C -0.067 4.067 11 C 0.048 3.952 12 N -0.327 5.327 13 C 0.398 3.602 14 O -0.446 6.446 15 N -0.387 5.387 16 C 0.010 3.990 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.060 4.060 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.234 0.766 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.247 0.753 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.174 -33.219 -5.928 33.744 hybrid contribution 1.741 0.082 -0.444 1.799 sum 1.567 -33.137 -6.372 33.780 Atomic orbital electron populations 1.21541 0.79262 1.02108 1.02660 1.45675 1.07798 1.08483 1.76968 1.18178 0.87168 0.83708 0.76167 1.90843 1.69801 1.30992 1.48484 1.19644 0.92773 0.93699 1.09506 1.20938 0.93533 0.96838 0.97901 1.20884 0.94845 0.96453 1.09246 1.18884 0.82645 0.92721 0.98892 1.85998 1.16008 1.32237 1.88565 1.23102 0.98170 0.83884 1.01515 1.16719 0.90507 0.82641 1.05310 1.42494 1.18910 1.06138 1.65196 1.16022 0.84437 0.80383 0.79407 1.90936 1.20294 1.84993 1.48368 1.45408 1.23277 1.06440 1.63556 1.21608 0.97023 0.81474 0.98889 1.21901 0.98175 0.94765 1.00999 1.19028 0.96117 0.89730 0.96497 1.21160 1.04291 0.92434 1.38241 0.92706 1.25033 0.95221 0.99030 0.95218 1.69954 1.20746 1.22962 1.39544 0.86637 0.80791 0.81923 0.78496 1.20263 1.21287 1.20276 1.21535 0.91227 0.99972 0.93224 0.92083 0.90686 0.92018 0.76636 0.85490 0.84494 0.87994 0.92390 0.92415 0.75336 0.77033 0.91551 0.91642 0.92714 0.92672 0.96171 0.96204 0.92859 0.81076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.84 0.64 1.25 16 2 N -0.74 -5.98 5.66 -68.12 -0.39 -6.36 16 3 C 0.56 7.14 7.76 -12.44 -0.10 7.05 16 4 O -0.52 -9.19 16.34 5.29 0.09 -9.10 16 5 C -0.15 -1.79 5.87 -104.97 -0.62 -2.41 16 6 C -0.07 -0.57 9.53 -39.19 -0.37 -0.94 16 7 C -0.20 -1.47 9.01 -39.53 -0.36 -1.83 16 8 C 0.12 1.16 6.71 -38.89 -0.26 0.90 16 9 O -0.32 -2.66 9.89 -19.09 -0.19 -2.85 16 10 C 0.03 0.12 9.81 101.05 0.99 1.11 16 11 C 0.14 1.84 6.44 -83.54 -0.54 1.30 16 12 N -0.68 -8.49 5.30 -14.14 -0.07 -8.56 16 13 C 0.70 11.11 8.37 -86.91 -0.73 10.39 16 14 O -0.57 -11.39 13.51 5.29 0.07 -11.32 16 15 N -0.73 -10.81 5.56 -65.22 -0.36 -11.17 16 16 C 0.13 2.40 5.67 -4.04 -0.02 2.38 16 17 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 18 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 20 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 23 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.04 -0.55 8.26 -39.02 -0.32 -0.87 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.40 1.82 6.85 -40.82 -0.28 1.54 16 32 H 0.13 0.51 6.39 -52.49 -0.34 0.18 16 33 H 0.14 0.60 6.27 -52.48 -0.33 0.27 16 34 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16 36 H 0.06 0.17 7.64 -51.93 -0.40 -0.22 16 37 H 0.41 3.92 8.35 -40.82 -0.34 3.58 16 38 H 0.40 4.58 8.49 -40.82 -0.35 4.23 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.17 3.09 5.36 -52.49 -0.28 2.80 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -37.77 387.84 -8.14 -45.92 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.48 Total: 4.53 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.37 Total: 2.78 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.09 Total: -52.47 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.03 Total: -23.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.77 -8.14 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171373086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.561 kcal (2) G-P(sol) polarization free energy of solvation -37.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds