Wall clock time and date at job start Tue Mar 31 2020 18:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00501 * 2 1 4 4 O 1.21586 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.47612 * 120.00382 * 179.97438 * 3 2 1 6 6 C 1.39717 * 120.06050 * 359.97438 * 5 3 2 7 7 C 1.37798 * 120.03222 * 180.02562 * 6 5 3 8 8 C 1.38811 * 120.16556 * 359.97438 * 7 6 5 9 9 O 1.35791 * 119.93713 * 180.27880 * 8 7 6 10 10 C 1.42905 * 116.99861 * 359.73394 * 9 8 7 11 11 C 1.39526 * 120.12738 * 0.02562 * 8 7 6 12 12 N 1.40188 * 120.01720 * 180.02562 * 11 8 7 13 13 C 1.34781 * 119.99789 * 204.77735 * 12 11 8 14 14 O 1.21587 * 120.00054 * 5.63115 * 13 12 11 15 15 N 1.34781 * 119.99677 * 185.62742 * 13 12 11 16 16 C 1.46501 * 119.99474 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46784 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46963 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47109 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99774 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00041 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99788 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47441 * 59.99922 * 23 21 19 25 25 H 1.48507 * 109.46795 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47043 * 299.99250 * 23 21 19 27 27 C 1.38285 * 119.96535 * 359.97438 * 11 8 7 28 28 H 1.09004 * 109.46953 * 59.99650 * 1 2 3 29 29 H 1.08993 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47211 * 300.00352 * 1 2 3 31 31 H 0.97002 * 120.00019 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.98397 * 0.02562 * 6 5 3 33 33 H 1.08009 * 119.91916 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.46867 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.46736 * 299.99104 * 10 9 8 36 36 H 1.08994 * 109.47329 * 59.99551 * 10 9 8 37 37 H 0.96998 * 120.00507 * 24.77010 * 12 11 8 38 38 H 0.96999 * 120.00458 * 0.02562 * 15 13 12 39 39 H 1.08995 * 109.47487 * 300.00071 * 16 15 13 40 40 H 1.09006 * 109.47215 * 60.00620 * 16 15 13 41 41 H 1.09003 * 109.46838 * 299.99934 * 17 16 15 42 42 H 1.08997 * 109.46997 * 59.99932 * 17 16 15 43 43 H 1.09003 * 109.47079 * 299.99528 * 18 17 16 44 44 H 1.08997 * 109.47530 * 60.00000 * 18 17 16 45 45 H 0.96996 * 120.00414 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.08378 * 179.97438 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2202 0.0005 5 6 3.6151 1.1671 0.0006 6 6 4.3149 -0.0422 0.0017 7 6 5.6929 -0.0415 0.0027 8 6 6.3898 1.1589 0.0022 9 8 7.7477 1.1542 -0.0025 10 6 8.3920 -0.1214 -0.0008 11 6 5.6978 2.3705 0.0011 12 7 6.4040 3.5815 0.0000 13 6 5.8280 4.6979 0.4882 14 8 4.7375 4.6356 1.0223 15 7 6.4609 5.8834 0.3844 16 6 5.8344 7.0969 0.9146 17 6 6.7543 8.2947 0.6689 18 6 6.1004 9.5620 1.2231 19 6 7.0061 10.7419 0.9806 20 1 7.9535 10.6017 0.4815 21 6 6.6257 12.0000 1.3969 22 7 5.4722 12.1706 2.0051 23 14 7.7487 13.4623 1.0969 24 1 7.9763 13.6206 -0.3620 25 1 7.1140 14.6924 1.6347 26 1 9.0483 13.2365 1.7791 27 6 4.3150 2.3761 0.0000 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.7756 -0.9779 0.0017 33 1 6.2320 -0.9774 0.0031 34 1 9.4731 0.0176 -0.0045 35 1 8.1003 -0.6745 0.8921 36 1 8.0941 -0.6802 -0.8879 37 1 7.3072 3.6160 -0.3519 38 1 7.3307 5.9331 -0.0419 39 1 4.8810 7.2626 0.4130 40 1 5.6664 6.9811 1.9853 41 1 7.7079 8.1292 1.1703 42 1 6.9220 8.4104 -0.4019 43 1 5.1466 9.7277 0.7221 44 1 5.9330 9.4461 2.2939 45 1 5.2047 13.0557 2.2983 46 1 3.7774 3.3128 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171373086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:01 Heat of formation + Delta-G solvation = -107.831942 kcal Electronic energy + Delta-G solvation = -27751.113225 eV Core-core repulsion = 23639.983547 eV Total energy + Delta-G solvation = -4111.129678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10835 -40.94231 -40.39890 -38.20169 -37.08125 -35.98247 -35.63393 -35.22860 -33.10907 -31.56843 -30.88806 -28.66251 -28.47725 -27.24679 -25.26060 -24.18199 -23.76834 -22.37324 -21.86114 -21.54700 -19.92557 -19.29500 -18.75160 -18.51847 -17.69158 -17.41791 -16.96412 -16.67179 -16.56306 -16.41512 -16.23762 -16.00234 -15.71706 -15.42995 -15.20824 -14.86035 -14.50090 -14.26210 -14.12506 -13.82775 -13.75192 -13.69787 -13.47790 -13.16300 -12.98236 -12.72278 -12.55618 -12.41671 -12.23257 -12.01326 -11.76136 -11.67433 -11.55713 -11.26681 -11.16152 -11.09722 -10.54921 -10.23172 -10.22293 -9.67693 -8.87224 -8.19062 -6.31050 -0.20075 0.21818 1.40742 1.44388 1.45004 1.52932 1.68367 2.04228 2.16638 2.24124 2.42071 2.81399 3.10651 3.14341 3.73956 3.76490 3.90357 4.10891 4.17462 4.20667 4.29691 4.43078 4.47342 4.50281 4.53704 4.61480 4.72183 4.82528 4.85494 4.93446 4.94390 4.96604 5.09959 5.15711 5.25194 5.31332 5.37502 5.41464 5.51603 5.64398 5.70082 5.83774 5.86459 6.21903 6.30806 6.52589 6.85725 6.91432 7.21194 7.38167 7.39168 8.93005 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002081 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.375842 B =13453.654839 C =15394.875897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.552 3.448 4 O -0.591 6.591 5 C -0.173 4.173 6 C -0.046 4.046 7 C -0.184 4.184 8 C 0.130 3.870 9 O -0.327 6.327 10 C 0.015 3.985 11 C 0.113 3.887 12 N -0.664 5.664 13 C 0.695 3.305 14 O -0.616 6.616 15 N -0.720 5.720 16 C 0.148 3.852 17 C -0.099 4.099 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.068 0.932 21 C -0.006 4.006 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.264 1.264 27 C -0.068 4.068 28 H 0.048 0.952 29 H 0.122 0.878 30 H 0.045 0.955 31 H 0.420 0.580 32 H 0.175 0.825 33 H 0.183 0.817 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.425 0.575 38 H 0.415 0.585 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.069 0.931 43 H -0.009 1.009 44 H -0.008 1.008 45 H 0.263 0.737 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -38.276 -7.568 39.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.341 3.659 4 O -0.472 6.472 5 C -0.177 4.177 6 C -0.066 4.066 7 C -0.202 4.202 8 C 0.081 3.919 9 O -0.240 6.240 10 C -0.079 4.079 11 C 0.017 3.983 12 N -0.312 5.312 13 C 0.395 3.605 14 O -0.496 6.496 15 N -0.376 5.376 16 C 0.024 3.976 17 C -0.137 4.137 18 C -0.015 4.015 19 C -0.579 4.579 20 H 0.087 0.913 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.189 1.189 27 C -0.090 4.090 28 H 0.067 0.933 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.259 0.741 32 H 0.192 0.808 33 H 0.201 0.799 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.264 0.736 38 H 0.252 0.748 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.009 0.991 44 H 0.011 0.989 45 H 0.072 0.928 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.883 -37.238 -7.022 38.004 hybrid contribution 0.830 1.093 -0.120 1.378 sum 3.713 -36.144 -7.143 37.030 Atomic orbital electron populations 1.21718 0.78376 1.04673 1.01303 1.45532 1.08415 1.07969 1.74688 1.18545 0.87877 0.84006 0.75516 1.90807 1.71025 1.33510 1.51878 1.19668 0.92309 0.94459 1.11256 1.21393 0.93950 0.96753 0.94479 1.21405 0.94704 0.97180 1.06944 1.18930 0.83636 0.92161 0.97144 1.85999 1.15010 1.35033 1.87993 1.23491 0.98807 0.82461 1.03111 1.16860 0.90179 0.83577 1.07705 1.42196 1.19273 1.05324 1.64425 1.16160 0.83888 0.81233 0.79228 1.90931 1.22450 1.85777 1.50417 1.45006 1.23853 1.05196 1.63513 1.21155 0.96169 0.82439 0.97856 1.21594 0.98245 0.92315 1.01577 1.18945 0.95238 0.92517 0.94774 1.21647 1.04965 0.93284 1.37998 0.91348 1.26071 0.96824 1.02611 0.94846 1.70115 1.22907 1.23771 1.40823 0.85430 0.78730 0.77505 0.78943 1.18989 1.21227 1.18894 1.21214 0.92314 0.99370 0.96088 0.93341 0.86000 0.93659 0.74138 0.80754 0.79948 0.86471 0.91001 0.90411 0.73618 0.74816 0.93487 0.93241 0.91029 0.91184 0.99092 0.98947 0.92818 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.70 127.77 1.37 2.44 16 2 N -0.71 -10.63 5.66 -487.70 -2.76 -13.39 16 3 C 0.55 14.70 7.76 86.72 0.67 15.37 16 4 O -0.59 -22.89 16.34 -3.99 -0.07 -22.96 16 5 C -0.17 -4.11 5.87 -20.09 -0.12 -4.23 16 6 C -0.05 -0.56 9.53 22.52 0.21 -0.35 16 7 C -0.18 -1.95 9.01 22.30 0.20 -1.75 16 8 C 0.13 2.26 6.71 22.72 0.15 2.42 16 9 O -0.33 -4.49 9.89 -91.21 -0.90 -5.39 16 10 C 0.01 0.06 9.81 113.37 1.11 1.17 16 11 C 0.11 2.91 6.44 38.13 0.25 3.16 16 12 N -0.66 -17.03 5.30 -316.91 -1.68 -18.70 16 13 C 0.69 23.52 8.37 179.05 1.50 25.02 16 14 O -0.62 -27.06 13.51 -3.99 -0.05 -27.12 16 15 N -0.72 -21.88 5.56 -478.51 -2.66 -24.54 16 16 C 0.15 5.65 5.67 86.38 0.49 6.14 16 17 C -0.10 -3.97 5.27 30.60 0.16 -3.81 16 18 C 0.02 1.24 4.97 29.85 0.15 1.38 16 19 C -0.54 -30.80 9.11 25.60 0.23 -30.56 16 20 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 21 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 22 N -0.94 -58.59 13.29 21.45 0.28 -58.30 16 23 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 C -0.07 -2.12 8.26 22.63 0.19 -1.94 16 28 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.42 2.33 6.85 -92.71 -0.63 1.69 16 32 H 0.18 0.38 6.39 -2.91 -0.02 0.36 16 33 H 0.18 0.32 6.27 -2.91 -0.02 0.30 16 34 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.07 0.13 7.66 -2.39 -0.02 0.11 16 36 H 0.08 0.04 7.64 -2.39 -0.02 0.03 16 37 H 0.43 7.89 8.35 -92.71 -0.77 7.12 16 38 H 0.41 9.31 8.49 -92.71 -0.79 8.52 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.12 5.05 5.36 -2.91 -0.02 5.04 16 Total: -1.00 -91.67 387.84 0.07 -91.61 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -1.15 Total: 17.59 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 7.03 Total: 14.57 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -6.82 Total: -114.93 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.02 Total: -55.46 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -91.67 0.07 -91.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171373086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.225 kcal (2) G-P(sol) polarization free energy of solvation -91.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds