Wall clock time and date at job start Tue Mar 31 2020 18:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99896 * 2 1 4 4 O 1.21283 * 120.00124 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99859 * 180.02562 * 3 2 1 6 6 O 1.42895 * 109.47093 * 179.97438 * 5 3 2 7 7 C 1.35982 * 117.00024 * 179.97438 * 6 5 3 8 8 C 1.38713 * 119.98480 * 0.27967 * 7 6 5 9 9 C 1.38096 * 120.01189 * 180.23242 * 8 7 6 10 10 C 1.38830 * 119.98656 * 359.46499 * 9 8 7 11 11 N 1.40154 * 120.01325 * 180.29791 * 10 9 8 12 12 C 1.34781 * 119.99626 * 144.91208 * 11 10 9 13 13 O 1.21589 * 120.00391 * 4.61454 * 12 11 10 14 14 N 1.34779 * 119.99496 * 184.62192 * 12 11 10 15 15 C 1.46500 * 119.99621 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47143 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47275 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47314 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00362 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00140 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99574 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47207 * 90.00454 * 22 20 18 24 24 H 1.48503 * 109.46908 * 210.00079 * 22 20 18 25 25 H 1.48502 * 109.47554 * 330.00448 * 22 20 18 26 26 C 1.38834 * 119.97149 * 0.28177 * 10 9 8 27 27 C 1.38091 * 119.98585 * 359.97438 * 26 10 9 28 28 H 1.09002 * 109.46985 * 59.99858 * 1 2 3 29 29 H 1.08996 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46899 * 300.00284 * 1 2 3 31 31 H 0.96994 * 119.99638 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47255 * 59.99549 * 5 3 2 33 33 H 1.09002 * 109.46800 * 299.99953 * 5 3 2 34 34 H 1.08003 * 119.99520 * 359.97438 * 8 7 6 35 35 H 1.08006 * 120.00976 * 179.73706 * 9 8 7 36 36 H 0.97001 * 120.00261 * 324.90531 * 11 10 9 37 37 H 0.96997 * 120.00163 * 359.97438 * 14 12 11 38 38 H 1.09008 * 109.47113 * 299.99234 * 15 14 12 39 39 H 1.08999 * 109.47907 * 59.99248 * 15 14 12 40 40 H 1.09000 * 109.46816 * 299.99945 * 16 15 14 41 41 H 1.09000 * 109.47291 * 59.99936 * 16 15 14 42 42 H 1.09000 * 109.46799 * 300.00036 * 17 16 15 43 43 H 1.09006 * 109.47062 * 59.99428 * 17 16 15 44 44 H 0.96996 * 119.99829 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.00821 * 180.02562 * 26 10 9 46 46 H 1.07998 * 119.99640 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1672 -0.0006 6 8 4.1222 2.5145 -0.0011 7 6 5.4703 2.6926 -0.0011 8 6 6.3150 1.5924 -0.0065 9 6 7.6841 1.7726 -0.0017 10 6 8.2151 3.0554 -0.0026 11 7 9.6046 3.2390 -0.0040 12 6 10.1468 4.2739 -0.6759 13 8 9.4275 5.0956 -1.2105 14 7 11.4865 4.3980 -0.7553 15 6 12.0760 5.5226 -1.4860 16 6 13.6018 5.4285 -1.4226 17 6 14.2174 6.6026 -2.1864 18 6 15.7202 6.5103 -2.1234 19 1 16.1894 5.6958 -1.5914 20 6 16.4963 7.4661 -2.7439 21 7 17.8078 7.3852 -2.6894 22 14 15.6848 8.8752 -3.6633 23 1 15.4671 10.0126 -2.7337 24 1 16.5634 9.3092 -4.7792 25 1 14.3790 8.4242 -4.2080 26 6 7.3691 4.1562 -0.0025 27 6 6.0002 3.9746 -0.0020 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 4.0089 0.6536 -0.8907 33 1 4.0095 0.6532 0.8892 34 1 5.9019 0.5945 -0.0103 35 1 8.3418 0.9159 -0.0016 36 1 10.1759 2.6213 0.4786 37 1 12.0604 3.7426 -0.3286 38 1 11.7525 5.4894 -2.5265 39 1 11.7510 6.4599 -1.0344 40 1 13.9249 5.4619 -0.3822 41 1 13.9271 4.4913 -1.8742 42 1 13.8942 6.5688 -3.2268 43 1 13.8920 7.5401 -1.7352 44 1 18.3537 8.0575 -3.1263 45 1 7.7815 5.1544 -0.0037 46 1 5.3420 4.8308 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171569714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:22 Heat of formation + Delta-G solvation = -75.714497 kcal Electronic energy + Delta-G solvation = -26621.525698 eV Core-core repulsion = 22511.788737 eV Total energy + Delta-G solvation = -4109.736961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97022 -40.39806 -39.48657 -37.68002 -35.61705 -35.19261 -34.47581 -33.31657 -31.50637 -31.39836 -30.17848 -28.71096 -26.99813 -26.35528 -23.44012 -23.19445 -22.13104 -21.28497 -20.89752 -20.26582 -18.73842 -18.50218 -17.88235 -17.63706 -16.88854 -16.70931 -16.38401 -15.88056 -15.54920 -15.23929 -15.17343 -14.70376 -14.40176 -14.35642 -14.11911 -13.89359 -13.57361 -13.48139 -13.27192 -12.89101 -12.86859 -12.76579 -12.69567 -12.12897 -11.94690 -11.68663 -11.27946 -11.10146 -10.91179 -10.42624 -10.34842 -10.07584 -10.02938 -9.83935 -9.79083 -9.70990 -9.24655 -9.21744 -8.95486 -8.56716 -7.91731 -6.07669 -4.06579 1.08947 1.13406 1.99742 2.06697 2.56118 3.07346 3.21760 3.31013 3.38774 3.43027 3.59723 4.02799 4.14456 4.36045 4.43634 4.46904 4.53804 4.59890 4.63784 4.92243 5.00838 5.15473 5.21715 5.26671 5.36650 5.46929 5.63886 5.64338 5.70350 5.73330 5.98939 5.99877 6.10069 6.25258 6.34271 6.42443 6.62890 6.63388 6.76263 6.77301 6.87526 7.07375 7.21035 7.34420 7.58206 7.74020 7.89913 8.47666 8.50907 8.95933 9.54668 11.05574 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.040837 B = 0.001403 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.489399 B =19946.954732 C =20379.423462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.513 3.487 4 O -0.512 6.512 5 C 0.042 3.958 6 O -0.291 6.291 7 C 0.106 3.894 8 C -0.191 4.191 9 C -0.110 4.110 10 C 0.137 3.863 11 N -0.689 5.689 12 C 0.700 3.300 13 O -0.577 6.577 14 N -0.735 5.735 15 C 0.131 3.869 16 C -0.113 4.113 17 C -0.011 4.011 18 C -0.523 4.523 19 H 0.072 0.928 20 C 0.068 3.932 21 N -0.903 5.903 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.264 1.264 26 C -0.079 4.079 27 C -0.125 4.125 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.404 0.596 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.406 0.594 37 H 0.397 0.603 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.263 0.737 45 H 0.151 0.849 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.046 -21.422 8.872 38.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.298 3.702 4 O -0.386 6.386 5 C -0.037 4.037 6 O -0.204 6.204 7 C 0.060 3.940 8 C -0.211 4.211 9 C -0.131 4.131 10 C 0.042 3.958 11 N -0.338 5.338 12 C 0.400 3.600 13 O -0.454 6.454 14 N -0.389 5.389 15 C 0.008 3.992 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.561 4.561 19 H 0.090 0.910 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.099 4.099 27 C -0.145 4.145 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.237 0.763 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.241 0.759 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.168 0.832 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -32.056 -19.585 8.272 38.466 hybrid contribution 0.702 -0.643 -0.096 0.957 sum -31.355 -20.228 8.177 38.199 Atomic orbital electron populations 1.21581 0.78659 1.02558 1.02728 1.45617 1.08120 1.08254 1.76871 1.20165 0.89073 0.84193 0.76797 1.90783 1.69854 1.31049 1.46874 1.22388 0.92324 0.85084 1.03901 1.86168 1.19370 1.25621 1.89236 1.18976 0.81449 0.94411 0.99147 1.20916 0.93514 0.97735 1.08891 1.20630 0.94718 0.95473 1.02251 1.17440 0.82130 0.93418 1.02840 1.42608 1.05516 1.31109 1.54546 1.15995 0.82915 0.81693 0.79401 1.90921 1.60009 1.42907 1.51525 1.45352 1.04170 1.30942 1.58461 1.21589 0.94456 0.87279 0.95851 1.21715 0.90413 1.01391 1.01590 1.19501 0.96852 0.93126 0.95410 1.21091 0.89020 1.11612 1.34385 0.91017 1.25016 0.94691 0.97835 0.95835 1.69907 1.04057 1.35697 1.44536 0.86785 0.79863 0.82793 0.79921 1.20220 1.21354 1.18859 1.21250 0.91446 0.99948 0.97237 1.20376 0.94752 0.94867 1.04461 0.91927 0.90259 0.91945 0.76261 0.88902 0.88912 0.85319 0.85361 0.75911 0.76925 0.91715 0.91699 0.92078 0.92075 0.96248 0.96679 0.92677 0.83153 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 10.70 59.85 0.64 0.94 16 2 N -0.73 -2.80 5.71 -67.07 -0.38 -3.18 16 3 C 0.51 3.99 7.91 -10.99 -0.09 3.91 16 4 O -0.51 -6.67 16.50 -14.36 -0.24 -6.91 16 5 C 0.04 0.25 5.22 36.00 0.19 0.44 16 6 O -0.29 -3.07 9.67 -39.60 -0.38 -3.45 16 7 C 0.11 1.08 6.69 -39.23 -0.26 0.82 16 8 C -0.19 -1.52 9.03 -39.46 -0.36 -1.88 16 9 C -0.11 -0.93 9.96 -39.41 -0.39 -1.32 16 10 C 0.14 1.50 6.30 -83.61 -0.53 0.97 16 11 N -0.69 -7.10 5.35 -14.19 -0.08 -7.18 16 12 C 0.70 9.79 8.41 -86.91 -0.73 9.06 16 13 O -0.58 -10.30 13.78 5.29 0.07 -10.23 16 14 N -0.74 -9.51 5.56 -65.22 -0.36 -9.88 16 15 C 0.13 2.10 5.67 -4.04 -0.02 2.08 16 16 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 17 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 19 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 22 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 26 C -0.08 -0.97 8.69 -39.41 -0.34 -1.32 16 27 C -0.13 -1.44 9.98 -39.46 -0.39 -1.83 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.40 0.06 8.83 -40.82 -0.36 -0.30 16 32 H 0.09 0.33 7.65 -51.93 -0.40 -0.07 16 33 H 0.09 0.29 7.67 -51.93 -0.40 -0.11 16 34 H 0.13 0.59 6.29 -52.48 -0.33 0.26 16 35 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 36 H 0.41 2.73 8.84 -40.82 -0.36 2.37 16 37 H 0.40 3.93 8.49 -40.82 -0.35 3.58 16 38 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 43 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.15 2.12 6.22 -52.49 -0.33 1.79 16 46 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -38.53 389.92 -9.04 -47.56 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.68 Total: 0.98 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.97 Total: -3.73 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.05 Total: -47.06 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.55 Total: -20.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.53 -9.04 -47.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171569714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.150 kcal (2) G-P(sol) polarization free energy of solvation -38.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds