Wall clock time and date at job start Tue Mar 31 2020 18:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99896 * 2 1 4 4 O 1.21283 * 120.00124 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99859 * 180.02562 * 3 2 1 6 6 O 1.42895 * 109.47093 * 179.97438 * 5 3 2 7 7 C 1.35982 * 117.00024 * 179.97438 * 6 5 3 8 8 C 1.38713 * 119.98480 * 0.27967 * 7 6 5 9 9 C 1.38096 * 120.01189 * 180.23242 * 8 7 6 10 10 C 1.38830 * 119.98656 * 359.46499 * 9 8 7 11 11 N 1.40154 * 120.01325 * 180.29791 * 10 9 8 12 12 C 1.34781 * 119.99626 * 144.91208 * 11 10 9 13 13 O 1.21589 * 120.00391 * 4.61454 * 12 11 10 14 14 N 1.34779 * 119.99496 * 184.62192 * 12 11 10 15 15 C 1.46500 * 119.99621 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47143 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47275 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47314 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00362 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00140 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99574 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47207 * 90.00454 * 22 20 18 24 24 H 1.48503 * 109.46908 * 210.00079 * 22 20 18 25 25 H 1.48502 * 109.47554 * 330.00448 * 22 20 18 26 26 C 1.38834 * 119.97149 * 0.28177 * 10 9 8 27 27 C 1.38091 * 119.98585 * 359.97438 * 26 10 9 28 28 H 1.09002 * 109.46985 * 59.99858 * 1 2 3 29 29 H 1.08996 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46899 * 300.00284 * 1 2 3 31 31 H 0.96994 * 119.99638 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47255 * 59.99549 * 5 3 2 33 33 H 1.09002 * 109.46800 * 299.99953 * 5 3 2 34 34 H 1.08003 * 119.99520 * 359.97438 * 8 7 6 35 35 H 1.08006 * 120.00976 * 179.73706 * 9 8 7 36 36 H 0.97001 * 120.00261 * 324.90531 * 11 10 9 37 37 H 0.96997 * 120.00163 * 359.97438 * 14 12 11 38 38 H 1.09008 * 109.47113 * 299.99234 * 15 14 12 39 39 H 1.08999 * 109.47907 * 59.99248 * 15 14 12 40 40 H 1.09000 * 109.46816 * 299.99945 * 16 15 14 41 41 H 1.09000 * 109.47291 * 59.99936 * 16 15 14 42 42 H 1.09000 * 109.46799 * 300.00036 * 17 16 15 43 43 H 1.09006 * 109.47062 * 59.99428 * 17 16 15 44 44 H 0.96996 * 119.99829 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.00821 * 180.02562 * 26 10 9 46 46 H 1.07998 * 119.99640 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1672 -0.0006 6 8 4.1222 2.5145 -0.0011 7 6 5.4703 2.6926 -0.0011 8 6 6.3150 1.5924 -0.0065 9 6 7.6841 1.7726 -0.0017 10 6 8.2151 3.0554 -0.0026 11 7 9.6046 3.2390 -0.0040 12 6 10.1468 4.2739 -0.6759 13 8 9.4275 5.0956 -1.2105 14 7 11.4865 4.3980 -0.7553 15 6 12.0760 5.5226 -1.4860 16 6 13.6018 5.4285 -1.4226 17 6 14.2174 6.6026 -2.1864 18 6 15.7202 6.5103 -2.1234 19 1 16.1894 5.6958 -1.5914 20 6 16.4963 7.4661 -2.7439 21 7 17.8078 7.3852 -2.6894 22 14 15.6848 8.8752 -3.6633 23 1 15.4671 10.0126 -2.7337 24 1 16.5634 9.3092 -4.7792 25 1 14.3790 8.4242 -4.2080 26 6 7.3691 4.1562 -0.0025 27 6 6.0002 3.9746 -0.0020 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 4.0089 0.6536 -0.8907 33 1 4.0095 0.6532 0.8892 34 1 5.9019 0.5945 -0.0103 35 1 8.3418 0.9159 -0.0016 36 1 10.1759 2.6213 0.4786 37 1 12.0604 3.7426 -0.3286 38 1 11.7525 5.4894 -2.5265 39 1 11.7510 6.4599 -1.0344 40 1 13.9249 5.4619 -0.3822 41 1 13.9271 4.4913 -1.8742 42 1 13.8942 6.5688 -3.2268 43 1 13.8920 7.5401 -1.7352 44 1 18.3537 8.0575 -3.1263 45 1 7.7815 5.1544 -0.0037 46 1 5.3420 4.8308 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171569714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:21 Heat of formation + Delta-G solvation = -105.548035 kcal Electronic energy + Delta-G solvation = -26622.819378 eV Core-core repulsion = 22511.788737 eV Total energy + Delta-G solvation = -4111.030640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78994 -41.16796 -40.21708 -38.49460 -36.96846 -35.71173 -35.45227 -35.09582 -33.23454 -32.11931 -30.80184 -29.65941 -28.43851 -26.80439 -24.84983 -24.01083 -23.14400 -22.27217 -21.90477 -21.44772 -19.53094 -19.33475 -18.98352 -18.52509 -18.29360 -17.40837 -17.00744 -16.90527 -16.55145 -16.27236 -16.00447 -15.79944 -15.69973 -15.45625 -15.09242 -14.78893 -14.76003 -14.32723 -14.09316 -13.93582 -13.81054 -13.69561 -13.59474 -13.41003 -13.10666 -12.73391 -12.69468 -12.36084 -12.01596 -11.87629 -11.76628 -11.58237 -11.31900 -11.27585 -11.05665 -10.87456 -10.75134 -10.22622 -10.11069 -9.97283 -8.69603 -8.28617 -6.32146 0.34326 0.36873 1.37619 1.39496 1.45912 1.50915 1.54966 1.63390 2.03628 2.37146 2.72246 2.81850 3.07678 3.21621 3.62610 3.88419 3.97186 4.08703 4.10564 4.15288 4.23540 4.29595 4.42503 4.46749 4.52339 4.60372 4.61670 4.84380 4.91367 4.91634 4.94981 5.05487 5.05804 5.28555 5.32880 5.33306 5.38299 5.49727 5.53673 5.58007 5.66406 5.85759 5.98317 6.28590 6.33520 6.51954 6.76094 7.00664 7.16041 7.32946 7.48088 8.87804 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.040837 B = 0.001403 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.489399 B =19946.954732 C =20379.423462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.506 3.494 4 O -0.579 6.579 5 C 0.036 3.964 6 O -0.322 6.322 7 C 0.103 3.897 8 C -0.178 4.178 9 C -0.095 4.095 10 C 0.115 3.885 11 N -0.670 5.670 12 C 0.697 3.303 13 O -0.620 6.620 14 N -0.725 5.725 15 C 0.146 3.854 16 C -0.099 4.099 17 C -0.013 4.013 18 C -0.530 4.530 19 H 0.039 0.961 20 C 0.007 3.993 21 N -0.951 5.951 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.248 1.248 26 C -0.099 4.099 27 C -0.149 4.149 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.425 0.575 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.425 0.575 37 H 0.414 0.586 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.266 0.734 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.392 -24.691 9.039 41.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.292 3.708 4 O -0.458 6.458 5 C -0.042 4.042 6 O -0.236 6.236 7 C 0.058 3.942 8 C -0.197 4.197 9 C -0.115 4.115 10 C 0.021 3.979 11 N -0.320 5.320 12 C 0.397 3.603 13 O -0.500 6.500 14 N -0.380 5.380 15 C 0.021 3.979 16 C -0.137 4.137 17 C -0.051 4.051 18 C -0.568 4.568 19 H 0.058 0.942 20 C -0.190 4.190 21 N -0.591 5.591 22 Si 0.768 3.232 23 H -0.193 1.193 24 H -0.211 1.211 25 H -0.172 1.172 26 C -0.120 4.120 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.263 0.737 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.264 0.736 37 H 0.251 0.749 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -33.400 -22.981 8.483 41.420 hybrid contribution 1.046 0.207 -0.084 1.069 sum -32.354 -22.774 8.399 40.447 Atomic orbital electron populations 1.21706 0.78388 1.04592 1.01377 1.45525 1.08414 1.08177 1.74690 1.20681 0.90096 0.84172 0.75824 1.90760 1.71195 1.33481 1.50352 1.22760 0.90821 0.83532 1.07066 1.86131 1.19466 1.28732 1.89277 1.19039 0.81898 0.94487 0.98811 1.21371 0.92961 0.98859 1.06502 1.21015 0.95462 0.95160 0.99873 1.17650 0.81944 0.94194 1.04140 1.42325 1.05680 1.30268 1.53711 1.16132 0.82728 0.82027 0.79396 1.90908 1.60988 1.44695 1.53399 1.45018 1.04196 1.30564 1.58218 1.21190 0.92889 0.88082 0.95725 1.21473 0.91516 0.99545 1.01143 1.19471 0.93862 0.95445 0.96331 1.21476 0.91721 1.10364 1.33251 0.94241 1.25937 0.95157 1.00860 0.97025 1.70050 1.05772 1.37126 1.46188 0.85741 0.79392 0.79372 0.78671 1.19337 1.21071 1.17164 1.21058 0.92181 0.99494 0.99232 1.20357 0.94484 0.95895 1.06078 0.93421 0.86441 0.93303 0.73717 0.85660 0.85275 0.80871 0.81670 0.73603 0.74922 0.92597 0.92510 0.91531 0.91516 0.96107 0.96251 0.92535 0.86014 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 10.70 127.77 1.37 1.81 16 2 N -0.71 -3.75 5.71 -484.50 -2.77 -6.52 16 3 C 0.51 7.24 7.91 87.66 0.69 7.93 16 4 O -0.58 -15.62 16.50 16.00 0.26 -15.35 16 5 C 0.04 0.32 5.22 71.23 0.37 0.69 16 6 O -0.32 -6.47 9.67 -74.31 -0.72 -7.19 16 7 C 0.10 1.97 6.69 22.50 0.15 2.12 16 8 C -0.18 -2.10 9.03 22.35 0.20 -1.89 16 9 C -0.09 -1.22 9.96 22.38 0.22 -1.00 16 10 C 0.12 2.35 6.30 38.09 0.24 2.59 16 11 N -0.67 -12.56 5.35 -317.06 -1.70 -14.25 16 12 C 0.70 18.90 8.41 179.05 1.51 20.41 16 13 O -0.62 -22.54 13.78 -4.00 -0.06 -22.60 16 14 N -0.72 -17.62 5.56 -478.51 -2.66 -20.29 16 15 C 0.15 4.49 5.67 86.38 0.49 4.98 16 16 C -0.10 -3.44 5.27 30.60 0.16 -3.28 16 17 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 18 C -0.53 -29.78 9.66 25.60 0.25 -29.53 16 19 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 20 C 0.01 0.41 5.47 84.66 0.46 0.88 16 21 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 22 Si 0.94 44.34 27.47 68.60 1.88 46.23 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.25 -10.92 6.54 99.48 0.65 -10.26 16 26 C -0.10 -2.55 8.69 22.38 0.19 -2.36 16 27 C -0.15 -3.58 9.98 22.35 0.22 -3.36 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.43 -1.51 8.83 -92.71 -0.82 -2.33 16 32 H 0.13 0.29 7.65 -2.39 -0.02 0.27 16 33 H 0.13 0.19 7.67 -2.39 -0.02 0.17 16 34 H 0.17 0.44 6.29 -2.91 -0.02 0.42 16 35 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.43 4.41 8.84 -92.71 -0.82 3.59 16 37 H 0.41 7.19 8.49 -92.71 -0.79 6.41 16 38 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 43 H 0.02 0.85 7.57 -2.38 -0.02 0.84 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.12 3.77 6.22 -2.91 -0.02 3.75 16 46 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -89.59 389.92 -0.24 -89.84 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -1.45 Total: 9.44 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.65 Total: -0.47 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -6.83 Total: -99.89 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.51 Total: -45.14 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Total: -89.59 -0.24 -89.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171569714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.711 kcal (2) G-P(sol) polarization free energy of solvation -89.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds