Wall clock time and date at job start Tue Mar 31 2020 18:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41602 * 113.99984 * 2 1 4 4 C 1.46502 * 119.99980 * 275.42096 * 3 2 1 5 5 C 1.34780 * 120.00112 * 95.41627 * 3 2 1 6 6 O 1.21586 * 120.00091 * 186.08724 * 5 3 2 7 7 C 1.47581 * 120.00076 * 6.08943 * 5 3 2 8 8 C 1.39753 * 120.07303 * 195.84766 * 7 5 3 9 9 C 1.37658 * 119.92235 * 180.27419 * 8 7 5 10 10 C 1.39145 * 120.07679 * 359.51676 * 9 8 7 11 11 N 1.39427 * 119.92593 * 180.23227 * 10 9 8 12 12 C 1.34776 * 120.00035 * 213.56642 * 11 10 9 13 13 O 1.21583 * 119.99512 * 5.25583 * 12 11 10 14 14 N 1.34777 * 120.00381 * 185.25127 * 12 11 10 15 15 C 1.46496 * 120.00204 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47382 * 180.02562 * 15 14 12 17 17 C 1.52995 * 109.47210 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47179 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99517 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00279 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00203 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47006 * 60.00181 * 22 20 18 24 24 H 1.48495 * 109.47280 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47162 * 300.00328 * 22 20 18 26 26 C 1.39130 * 120.14451 * 0.46072 * 10 9 8 27 27 C 1.37662 * 120.07961 * 359.79593 * 26 10 9 28 28 H 1.08996 * 109.46910 * 300.00045 * 1 2 3 29 29 H 1.08997 * 109.46698 * 60.00147 * 1 2 3 30 30 H 1.09003 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46892 * 269.99726 * 4 3 2 32 32 H 1.08996 * 109.46992 * 29.99723 * 4 3 2 33 33 H 1.08996 * 109.47513 * 149.99634 * 4 3 2 34 34 H 1.08000 * 120.03889 * 0.02562 * 8 7 5 35 35 H 1.07996 * 119.96262 * 179.72713 * 9 8 7 36 36 H 0.97003 * 120.00137 * 33.57160 * 11 10 9 37 37 H 0.97003 * 119.99586 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47158 * 300.00387 * 15 14 12 39 39 H 1.09002 * 109.46830 * 60.00025 * 15 14 12 40 40 H 1.09000 * 109.47044 * 300.00156 * 16 15 14 41 41 H 1.09002 * 109.46876 * 59.99842 * 16 15 14 42 42 H 1.09000 * 109.47025 * 299.99900 * 17 16 15 43 43 H 1.08995 * 109.47348 * 60.00295 * 17 16 15 44 44 H 0.96996 * 120.00475 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.96108 * 179.76657 * 26 10 9 46 46 H 1.07995 * 120.04607 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1934 2.0115 -1.2631 5 6 2.3797 1.8645 1.1620 6 8 2.7709 3.0156 1.1755 7 6 2.3154 1.0923 2.4180 8 6 2.3781 1.7509 3.6490 9 6 2.3235 1.0270 4.8187 10 6 2.1958 -0.3579 4.7763 11 7 2.1359 -1.0875 5.9630 12 6 2.6706 -2.3232 6.0220 13 8 3.2883 -2.7642 5.0722 14 7 2.5207 -3.0700 7.1339 15 6 3.1024 -4.4130 7.1982 16 6 2.7884 -5.0403 8.5579 17 6 3.3964 -6.4426 8.6253 18 6 3.0866 -7.0607 9.9643 19 1 2.5136 -6.5083 10.6944 20 6 3.5345 -8.3312 10.2574 21 7 4.2318 -9.0041 9.3682 22 14 3.1510 -9.0971 11.9175 23 1 1.6792 -9.1862 12.0933 24 1 3.7400 -10.4587 11.9824 25 1 3.7284 -8.2555 12.9961 26 6 2.1325 -1.0166 3.5525 27 6 2.1919 -0.2994 2.3790 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1748 1.7735 -1.6733 32 1 1.4210 1.7106 -1.9707 33 1 2.1247 3.0846 -1.0849 34 1 2.4735 2.8261 3.6826 35 1 2.3764 1.5350 5.7703 36 1 1.7093 -0.7057 6.7461 37 1 2.0276 -2.7182 7.8915 38 1 2.6783 -5.0309 6.4067 39 1 4.1827 -4.3476 7.0686 40 1 3.2121 -4.4225 9.3496 41 1 1.7080 -5.1057 8.6870 42 1 2.9730 -7.0606 7.8335 43 1 4.4767 -6.3768 8.4964 44 1 4.5473 -9.8978 9.5744 45 1 2.0372 -2.0920 3.5231 46 1 2.1432 -0.8113 1.4293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172418141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:06 Heat of formation + Delta-G solvation = -24.255935 kcal Electronic energy + Delta-G solvation = -27491.677886 eV Core-core repulsion = 23384.172335 eV Total energy + Delta-G solvation = -4107.505550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93386 -40.24396 -38.45140 -37.82433 -35.68981 -34.80574 -33.44497 -33.38639 -31.43124 -31.23414 -30.11522 -27.87312 -26.91854 -26.33282 -23.84149 -23.09720 -22.69745 -21.10387 -20.81929 -20.36784 -18.64103 -18.50915 -17.82585 -17.08135 -16.60457 -16.36971 -15.93871 -15.57445 -15.27697 -15.00699 -14.77173 -14.61983 -14.46370 -14.30366 -14.20143 -13.88077 -13.61438 -13.42785 -13.16848 -12.81363 -12.73693 -12.31919 -12.30216 -11.87997 -11.83960 -11.62922 -10.98059 -10.92063 -10.79380 -10.65829 -10.57813 -10.24736 -10.13066 -9.91581 -9.50321 -9.49422 -9.18289 -9.16925 -8.95515 -8.39939 -8.28192 -6.04549 -4.08090 0.58093 1.21987 1.40070 2.37023 2.53139 3.09566 3.29898 3.35039 3.36604 3.52470 3.70340 4.10428 4.41949 4.55063 4.66200 4.75419 4.75678 4.79996 4.82447 4.99104 5.10600 5.15365 5.25068 5.27929 5.31151 5.35441 5.58538 5.71997 5.83883 5.88608 5.93735 6.05962 6.09768 6.17413 6.29883 6.38003 6.53929 6.66206 6.78130 6.87392 6.93793 6.94889 7.59492 7.64003 7.71800 7.85574 7.93536 8.33886 8.46234 8.98221 9.56262 11.06598 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.001631 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.477328 B =17166.616957 C =17712.121204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.139 6.139 3 N -0.482 5.482 4 C 0.084 3.916 5 C 0.579 3.421 6 O -0.525 6.525 7 C -0.174 4.174 8 C -0.035 4.035 9 C -0.168 4.168 10 C 0.208 3.792 11 N -0.690 5.690 12 C 0.698 3.302 13 O -0.570 6.570 14 N -0.733 5.733 15 C 0.133 3.867 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.139 4.139 27 C -0.054 4.054 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.408 0.592 37 H 0.396 0.604 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.143 0.857 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 23.797 -17.683 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.142 6.142 3 N -0.262 5.262 4 C -0.056 4.056 5 C 0.371 3.629 6 O -0.402 6.402 7 C -0.178 4.178 8 C -0.054 4.054 9 C -0.189 4.189 10 C 0.111 3.889 11 N -0.337 5.337 12 C 0.398 3.602 13 O -0.446 6.446 14 N -0.387 5.387 15 C 0.010 3.990 16 C -0.159 4.159 17 C -0.014 4.014 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.159 4.159 27 C -0.073 4.073 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.244 0.756 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.161 0.839 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.933 23.532 -18.529 31.255 hybrid contribution -0.917 -0.284 1.682 1.936 sum -9.849 23.248 -16.847 30.353 Atomic orbital electron populations 1.23413 0.81310 1.04343 1.01604 1.90567 1.20512 1.06941 1.96207 1.49841 1.58944 1.10094 1.07298 1.21927 1.02426 0.97345 0.83925 1.18420 0.76421 0.85428 0.82616 1.90817 1.47784 1.16525 1.85119 1.19641 1.11568 0.94090 0.92529 1.20944 0.94140 1.00188 0.90169 1.20784 1.06993 0.92104 0.99046 1.17804 0.94926 0.90397 0.85746 1.42708 1.61144 1.16462 1.13393 1.16018 0.79843 0.80178 0.84164 1.90963 1.45214 1.71724 1.36676 1.45443 1.59031 1.18102 1.16134 1.21612 0.98205 0.79206 0.99971 1.21904 1.00949 0.99981 0.93043 1.19025 0.96258 0.88718 0.97359 1.21153 1.34549 1.00211 1.00371 0.92697 1.25025 0.95116 0.97252 0.97019 1.69950 1.36581 1.12214 1.34433 0.86634 0.78572 0.78373 0.84267 1.20261 1.21251 1.20248 1.21276 1.02635 1.01633 0.90400 1.22006 0.93269 0.92571 0.99476 0.92528 0.92676 0.87112 0.91427 0.90526 0.89207 0.84655 0.85022 0.75640 0.76993 0.91603 0.91619 0.92671 0.92661 0.96199 0.96193 0.92830 0.83888 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.30 101.05 1.14 1.10 16 2 O -0.14 -1.11 7.54 -11.47 -0.09 -1.20 16 3 N -0.48 -4.35 3.35 -68.13 -0.23 -4.57 16 4 C 0.08 0.52 10.83 59.85 0.65 1.17 16 5 C 0.58 6.54 7.64 -12.45 -0.10 6.44 16 6 O -0.53 -7.08 16.00 5.29 0.08 -6.99 16 7 C -0.17 -1.91 5.83 -104.95 -0.61 -2.53 16 8 C -0.03 -0.35 9.58 -39.23 -0.38 -0.73 16 9 C -0.17 -1.57 9.94 -39.46 -0.39 -1.96 16 10 C 0.21 2.31 6.28 -83.74 -0.53 1.79 16 11 N -0.69 -7.12 5.32 -14.22 -0.08 -7.20 16 12 C 0.70 9.83 8.29 -86.92 -0.72 9.11 16 13 O -0.57 -10.32 14.00 5.29 0.07 -10.25 16 14 N -0.73 -9.64 5.56 -65.23 -0.36 -10.00 16 15 C 0.13 2.21 5.67 -4.05 -0.02 2.19 16 16 C -0.12 -2.25 5.27 -26.74 -0.14 -2.39 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 19 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.14 -1.68 8.62 -39.46 -0.34 -2.02 16 27 C -0.05 -0.59 8.82 -39.22 -0.35 -0.94 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.58 7.35 -51.93 -0.38 0.20 16 34 H 0.14 1.23 7.73 -52.49 -0.41 0.82 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.41 2.72 8.83 -40.82 -0.36 2.36 16 37 H 0.40 3.95 8.49 -40.82 -0.35 3.61 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.14 1.96 6.39 -52.49 -0.34 1.62 16 46 H 0.16 1.56 5.04 -52.58 -0.26 1.30 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -35.01 391.05 -8.03 -43.03 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.71 Total: 2.29 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.33 Total: -1.47 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.07 Total: -47.49 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.07 Total: -18.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.01 -8.03 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172418141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.778 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds