Wall clock time and date at job start Tue Mar 31 2020 18:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41602 * 113.99984 * 2 1 4 4 C 1.46502 * 119.99980 * 275.42096 * 3 2 1 5 5 C 1.34780 * 120.00112 * 95.41627 * 3 2 1 6 6 O 1.21586 * 120.00091 * 186.08724 * 5 3 2 7 7 C 1.47581 * 120.00076 * 6.08943 * 5 3 2 8 8 C 1.39753 * 120.07303 * 195.84766 * 7 5 3 9 9 C 1.37658 * 119.92235 * 180.27419 * 8 7 5 10 10 C 1.39145 * 120.07679 * 359.51676 * 9 8 7 11 11 N 1.39427 * 119.92593 * 180.23227 * 10 9 8 12 12 C 1.34776 * 120.00035 * 213.56642 * 11 10 9 13 13 O 1.21583 * 119.99512 * 5.25583 * 12 11 10 14 14 N 1.34777 * 120.00381 * 185.25127 * 12 11 10 15 15 C 1.46496 * 120.00204 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47382 * 180.02562 * 15 14 12 17 17 C 1.52995 * 109.47210 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47179 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99517 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00279 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00152 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00203 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47006 * 60.00181 * 22 20 18 24 24 H 1.48495 * 109.47280 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47162 * 300.00328 * 22 20 18 26 26 C 1.39130 * 120.14451 * 0.46072 * 10 9 8 27 27 C 1.37662 * 120.07961 * 359.79593 * 26 10 9 28 28 H 1.08996 * 109.46910 * 300.00045 * 1 2 3 29 29 H 1.08997 * 109.46698 * 60.00147 * 1 2 3 30 30 H 1.09003 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46892 * 269.99726 * 4 3 2 32 32 H 1.08996 * 109.46992 * 29.99723 * 4 3 2 33 33 H 1.08996 * 109.47513 * 149.99634 * 4 3 2 34 34 H 1.08000 * 120.03889 * 0.02562 * 8 7 5 35 35 H 1.07996 * 119.96262 * 179.72713 * 9 8 7 36 36 H 0.97003 * 120.00137 * 33.57160 * 11 10 9 37 37 H 0.97003 * 119.99586 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47158 * 300.00387 * 15 14 12 39 39 H 1.09002 * 109.46830 * 60.00025 * 15 14 12 40 40 H 1.09000 * 109.47044 * 300.00156 * 16 15 14 41 41 H 1.09002 * 109.46876 * 59.99842 * 16 15 14 42 42 H 1.09000 * 109.47025 * 299.99900 * 17 16 15 43 43 H 1.08995 * 109.47348 * 60.00295 * 17 16 15 44 44 H 0.96996 * 120.00475 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.96108 * 179.76657 * 26 10 9 46 46 H 1.07995 * 120.04607 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.1934 2.0115 -1.2631 5 6 2.3797 1.8645 1.1620 6 8 2.7709 3.0156 1.1755 7 6 2.3154 1.0923 2.4180 8 6 2.3781 1.7509 3.6490 9 6 2.3235 1.0270 4.8187 10 6 2.1958 -0.3579 4.7763 11 7 2.1359 -1.0875 5.9630 12 6 2.6706 -2.3232 6.0220 13 8 3.2883 -2.7642 5.0722 14 7 2.5207 -3.0700 7.1339 15 6 3.1024 -4.4130 7.1982 16 6 2.7884 -5.0403 8.5579 17 6 3.3964 -6.4426 8.6253 18 6 3.0866 -7.0607 9.9643 19 1 2.5136 -6.5083 10.6944 20 6 3.5345 -8.3312 10.2574 21 7 4.2318 -9.0041 9.3682 22 14 3.1510 -9.0971 11.9175 23 1 1.6792 -9.1862 12.0933 24 1 3.7400 -10.4587 11.9824 25 1 3.7284 -8.2555 12.9961 26 6 2.1325 -1.0166 3.5525 27 6 2.1919 -0.2994 2.3790 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1748 1.7735 -1.6733 32 1 1.4210 1.7106 -1.9707 33 1 2.1247 3.0846 -1.0849 34 1 2.4735 2.8261 3.6826 35 1 2.3764 1.5350 5.7703 36 1 1.7093 -0.7057 6.7461 37 1 2.0276 -2.7182 7.8915 38 1 2.6783 -5.0309 6.4067 39 1 4.1827 -4.3476 7.0686 40 1 3.2121 -4.4225 9.3496 41 1 1.7080 -5.1057 8.6870 42 1 2.9730 -7.0606 7.8335 43 1 4.4767 -6.3768 8.4964 44 1 4.5473 -9.8978 9.5744 45 1 2.0372 -2.0920 3.5231 46 1 2.1432 -0.8113 1.4293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172418141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:05 Heat of formation + Delta-G solvation = -48.010572 kcal Electronic energy + Delta-G solvation = -27492.707964 eV Core-core repulsion = 23384.172335 eV Total energy + Delta-G solvation = -4108.535629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88306 -41.13546 -39.36073 -38.52786 -37.07227 -35.85895 -35.21360 -34.09824 -33.08169 -32.05894 -31.10768 -28.72425 -28.18003 -27.13121 -25.25792 -23.96067 -23.90444 -22.33835 -21.96387 -21.46694 -19.55160 -19.37395 -18.87731 -18.37458 -17.81237 -17.24186 -17.00152 -16.62219 -16.46100 -16.21758 -15.94260 -15.67652 -15.45662 -15.36780 -15.22319 -14.85537 -14.34929 -14.24729 -14.12332 -13.81261 -13.71782 -13.68962 -13.45523 -13.38818 -12.81693 -12.71261 -12.54515 -12.40466 -12.39113 -11.75652 -11.68971 -11.65078 -11.47159 -11.26172 -11.13147 -10.91940 -10.53254 -10.22348 -10.15474 -9.99285 -9.16161 -8.18010 -6.29474 -0.27467 0.40816 0.77681 1.41940 1.44254 1.45650 1.53501 1.57207 2.03055 2.43005 2.79342 2.90850 3.13357 3.15842 3.87363 3.91712 4.00462 4.15184 4.24248 4.31220 4.35524 4.37331 4.39534 4.44272 4.51391 4.55416 4.57385 4.73996 4.81216 4.95786 4.96863 5.05610 5.11332 5.17861 5.22695 5.24370 5.35193 5.40048 5.47044 5.54005 5.72976 5.85917 5.89244 5.92813 6.23791 6.24589 6.85237 6.87527 6.92940 7.39305 7.40364 8.93705 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.001631 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.477328 B =17166.616957 C =17712.121204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 O -0.150 6.150 3 N -0.481 5.481 4 C 0.079 3.921 5 C 0.573 3.427 6 O -0.555 6.555 7 C -0.182 4.182 8 C -0.038 4.038 9 C -0.153 4.153 10 C 0.194 3.806 11 N -0.670 5.670 12 C 0.698 3.302 13 O -0.613 6.613 14 N -0.720 5.720 15 C 0.148 3.852 16 C -0.101 4.101 17 C 0.022 3.978 18 C -0.542 4.542 19 H 0.067 0.933 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.266 1.266 26 C -0.154 4.154 27 C -0.052 4.052 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.164 0.836 36 H 0.428 0.572 37 H 0.416 0.584 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.070 0.930 42 H -0.007 1.007 43 H -0.008 1.008 44 H 0.263 0.737 45 H 0.122 0.878 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 25.337 -16.517 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.153 6.153 3 N -0.259 5.259 4 C -0.060 4.060 5 C 0.366 3.634 6 O -0.435 6.435 7 C -0.186 4.186 8 C -0.058 4.058 9 C -0.173 4.173 10 C 0.097 3.903 11 N -0.318 5.318 12 C 0.398 3.602 13 O -0.493 6.493 14 N -0.375 5.375 15 C 0.024 3.976 16 C -0.139 4.139 17 C -0.015 4.015 18 C -0.580 4.580 19 H 0.085 0.915 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.191 1.191 26 C -0.175 4.175 27 C -0.071 4.071 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.182 0.818 36 H 0.268 0.732 37 H 0.253 0.747 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.012 0.988 43 H 0.011 0.989 44 H 0.071 0.929 45 H 0.140 0.860 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.538 25.117 -17.348 32.293 hybrid contribution -0.466 -0.746 1.209 1.496 sum -11.005 24.371 -16.138 31.233 Atomic orbital electron populations 1.23608 0.79639 1.05676 1.02105 1.90537 1.22233 1.06277 1.96262 1.49877 1.58209 1.10340 1.07521 1.22121 1.03674 0.96952 0.83263 1.18485 0.76417 0.85183 0.83342 1.90792 1.49375 1.17571 1.85761 1.19801 1.11598 0.94067 0.93140 1.21169 0.93675 1.00839 0.90073 1.21027 1.05032 0.91096 1.00181 1.17950 0.95692 0.91182 0.85444 1.42382 1.60382 1.15001 1.14065 1.16106 0.79563 0.81021 0.83499 1.90947 1.47178 1.72925 1.38229 1.45029 1.58927 1.16735 1.16821 1.21150 0.97324 0.80746 0.98393 1.21593 1.01324 0.96520 0.94446 1.18948 0.94792 0.92050 0.95752 1.21663 1.34232 1.00642 1.01439 0.91451 1.26012 0.94927 0.98040 1.01110 1.70102 1.37968 1.12616 1.36778 0.85481 0.78849 0.77230 0.79354 1.19028 1.21309 1.19071 1.21202 1.03938 1.00785 0.91578 1.21981 0.93214 0.92612 0.99313 0.93095 0.91068 0.85318 0.91018 0.87912 0.89542 0.83589 0.81829 0.73221 0.74720 0.93006 0.93241 0.91243 0.91147 0.98845 0.98934 0.92863 0.85961 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 11.30 113.37 1.28 1.16 16 2 O -0.15 -2.28 7.54 -38.79 -0.29 -2.58 16 3 N -0.48 -8.38 3.35 -487.73 -1.64 -10.02 16 4 C 0.08 0.91 10.83 127.77 1.38 2.29 16 5 C 0.57 12.81 7.64 86.71 0.66 13.48 16 6 O -0.55 -14.92 16.00 -3.99 -0.06 -14.98 16 7 C -0.18 -3.91 5.83 -20.08 -0.12 -4.03 16 8 C -0.04 -0.71 9.58 22.50 0.22 -0.49 16 9 C -0.15 -2.50 9.94 22.35 0.22 -2.27 16 10 C 0.19 4.06 6.28 38.37 0.24 4.30 16 11 N -0.67 -12.57 5.32 -317.17 -1.69 -14.26 16 12 C 0.70 19.06 8.29 179.05 1.48 20.54 16 13 O -0.61 -22.56 14.00 -3.98 -0.06 -22.62 16 14 N -0.72 -17.87 5.56 -478.55 -2.66 -20.53 16 15 C 0.15 4.93 5.67 86.38 0.49 5.42 16 16 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 17 C 0.02 1.13 4.97 29.85 0.15 1.28 16 18 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 19 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 20 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 21 N -0.93 -56.48 13.29 21.44 0.28 -56.20 16 22 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C -0.15 -3.76 8.62 22.35 0.19 -3.56 16 27 C -0.05 -1.14 8.82 22.50 0.20 -0.94 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 1.07 7.35 -2.39 -0.02 1.06 16 34 H 0.15 2.41 7.73 -2.91 -0.02 2.39 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.43 4.39 8.83 -92.71 -0.82 3.57 16 37 H 0.42 7.12 8.49 -92.71 -0.79 6.34 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.12 3.50 6.39 -2.91 -0.02 3.48 16 46 H 0.16 3.24 5.04 -4.30 -0.02 3.21 16 Total: -1.00 -77.60 391.05 2.58 -75.02 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.60 Total: 16.43 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 7.26 Total: 4.57 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -5.70 Total: -101.00 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.41 Total: -40.18 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -77.60 2.58 -75.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172418141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.013 kcal (2) G-P(sol) polarization free energy of solvation -77.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds