Wall clock time and date at job start Tue Mar 31 2020 18:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00388 * 2 1 4 4 C 1.34780 * 119.99983 * 179.97438 * 2 1 3 5 5 O 1.21591 * 119.99817 * 0.02562 * 4 2 1 6 6 N 1.34775 * 120.00292 * 180.02562 * 4 2 1 7 7 C 1.46495 * 120.00172 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47156 * 180.02562 * 7 6 4 9 9 N 1.46495 * 109.47156 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09001 * 109.47460 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47040 * 300.00228 * 1 2 3 30 30 H 1.08996 * 109.47016 * 60.00310 * 1 2 3 31 31 H 1.08999 * 109.46895 * 269.99955 * 3 2 1 32 32 H 1.08998 * 109.46650 * 29.99328 * 3 2 1 33 33 H 1.08993 * 109.47426 * 149.99825 * 3 2 1 34 34 H 0.97005 * 119.99604 * 0.02562 * 6 4 2 35 35 H 1.08998 * 109.47323 * 59.99722 * 7 6 4 36 36 H 1.09005 * 109.46890 * 299.99941 * 7 6 4 37 37 H 1.08998 * 109.47672 * 59.99396 * 8 7 6 38 38 H 1.09005 * 109.46733 * 299.99498 * 8 7 6 39 39 H 0.97005 * 120.00223 * 359.97438 * 9 8 7 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5309 -2.2202 0.0005 6 7 3.4866 -1.1673 0.0010 7 6 4.2191 -2.4360 0.0010 8 6 5.7233 -2.1565 0.0023 9 7 6.4558 -3.4252 0.0017 10 6 7.8035 -3.4253 0.0021 11 8 8.4100 -2.3749 0.0035 12 6 8.5571 -4.7304 0.0021 13 6 10.0386 -4.4550 0.0032 14 6 10.7163 -4.3295 1.2023 15 6 12.0741 -4.0776 1.2067 16 6 12.7591 -3.9499 0.0053 17 8 14.0939 -3.7029 0.0064 18 6 14.7161 -3.7066 1.2025 19 1 14.1414 -3.8190 2.1099 20 6 16.0941 -3.5660 1.2676 21 7 16.7943 -3.4296 0.1623 22 14 16.9562 -3.5719 2.9247 23 1 16.6940 -4.8604 3.6147 24 1 18.4183 -3.4076 2.7227 25 1 16.4419 -2.4526 3.7542 26 6 12.0747 -4.0702 -1.1971 27 6 10.7178 -4.3277 -1.1948 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 3.9716 -0.3272 0.0014 35 1 3.9561 -3.0074 -0.8891 36 1 3.9554 -3.0078 0.8909 37 1 5.9861 -1.5852 0.8927 38 1 5.9873 -1.5846 -0.8873 39 1 5.9708 -4.2653 0.0010 40 1 8.2940 -5.3017 -0.8882 41 1 8.2935 -5.3022 0.8918 42 1 10.1832 -4.4293 2.1362 43 1 12.6027 -3.9801 2.1434 44 1 17.7582 -3.3309 0.2078 45 1 12.6037 -3.9670 -2.1329 46 1 10.1859 -4.4258 -2.1295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179572511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:22 Heat of formation + Delta-G solvation = -57.488693 kcal Electronic energy + Delta-G solvation = -26947.162912 eV Core-core repulsion = 22838.216281 eV Total energy + Delta-G solvation = -4108.946631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.62363 -39.81330 -38.77982 -36.72876 -36.24213 -35.77930 -34.16307 -32.45257 -31.47554 -30.11728 -29.65589 -28.29576 -26.76639 -25.90771 -25.01570 -23.00998 -21.93456 -21.28852 -20.51156 -20.05204 -18.63578 -17.94275 -17.19355 -16.95607 -16.64065 -16.62952 -15.97358 -15.82516 -14.97513 -14.74031 -14.53528 -14.44176 -14.32142 -14.12722 -13.73544 -13.68138 -13.40256 -13.38038 -13.15199 -13.06841 -12.67041 -12.57152 -12.45510 -12.18685 -12.14240 -11.77409 -11.46954 -11.23113 -10.81918 -10.72688 -10.64272 -10.61025 -10.40974 -9.78661 -9.65918 -9.29707 -9.25617 -9.08861 -8.78638 -8.11021 -7.12760 -6.41359 -3.99973 2.03880 2.29079 2.32224 2.72797 2.73494 3.05565 3.15500 3.17231 3.19200 3.59584 3.99869 4.25297 4.46956 4.58105 4.66699 4.75943 4.82164 4.96111 5.03626 5.06526 5.10082 5.14472 5.26833 5.30078 5.35329 5.37259 5.48360 5.54732 5.69293 5.76742 5.86366 5.88800 5.93096 6.23560 6.25591 6.35333 6.45828 6.74239 6.95426 7.08904 7.27277 7.36213 7.39801 7.40845 7.48939 7.88023 8.03836 8.09340 8.26597 9.04201 9.75116 10.76696 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.001554 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.198182 B =18017.473130 C =18428.781301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.638 5.638 3 C 0.078 3.922 4 C 0.707 3.293 5 O -0.589 6.589 6 N -0.742 5.742 7 C 0.128 3.872 8 C 0.109 3.891 9 N -0.738 5.738 10 C 0.511 3.489 11 O -0.518 6.518 12 C -0.079 4.079 13 C -0.172 4.172 14 C -0.056 4.056 15 C -0.233 4.233 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.116 0.884 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.423 4.710 0.226 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.376 5.376 3 C -0.066 4.066 4 C 0.408 3.592 5 O -0.467 6.467 6 N -0.400 5.400 7 C 0.003 3.997 8 C -0.015 4.015 9 N -0.393 5.393 10 C 0.298 3.702 11 O -0.392 6.392 12 C -0.118 4.118 13 C -0.173 4.173 14 C -0.074 4.074 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.211 4.211 27 C -0.078 4.078 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -28.981 4.802 -0.020 29.376 hybrid contribution 0.375 0.249 0.899 1.005 sum -28.606 5.051 0.879 29.062 Atomic orbital electron populations 1.21584 0.77604 1.04367 1.01024 1.46873 1.07260 1.04835 1.78675 1.21748 0.97068 0.85682 1.02072 1.15786 0.81639 0.83990 0.77793 1.90929 1.67653 1.29988 1.58088 1.45009 1.04817 1.09737 1.80413 1.21292 0.89693 0.85510 1.03248 1.21320 0.89497 0.87597 1.03121 1.45878 1.06802 1.08591 1.78078 1.21106 0.81155 0.92539 0.75408 1.90754 1.67759 1.33579 1.47109 1.20396 0.93381 0.94034 1.04039 1.18631 0.92413 1.12524 0.93735 1.20507 0.93708 0.97075 0.96157 1.21103 0.94662 1.11046 0.98399 1.19392 0.85340 0.91682 0.93287 1.83975 1.14978 1.76293 1.32923 1.21282 0.90242 1.52139 0.83131 0.89138 1.25280 0.95370 0.96609 0.99240 1.70030 1.07311 1.45458 1.27038 0.85787 0.78308 0.79137 0.80221 1.19523 1.20298 1.19537 1.20154 0.94070 1.10691 0.96203 1.20402 0.93225 0.97812 0.96321 0.89304 0.92363 0.92379 0.92332 0.90511 0.91360 0.76436 0.90759 0.90790 0.90991 0.90967 0.76460 0.88818 0.88861 0.87824 0.85601 0.92018 0.86551 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 10.69 59.85 0.64 1.17 16 2 N -0.64 -4.30 3.27 -195.34 -0.64 -4.94 16 3 C 0.08 0.26 10.25 59.85 0.61 0.87 16 4 C 0.71 6.73 8.28 -86.92 -0.72 6.01 16 5 O -0.59 -7.86 15.67 5.29 0.08 -7.78 16 6 N -0.74 -5.26 5.42 -65.22 -0.35 -5.62 16 7 C 0.13 0.90 5.79 -4.04 -0.02 0.88 16 8 C 0.11 0.87 5.79 -4.04 -0.02 0.85 16 9 N -0.74 -6.45 5.56 -60.29 -0.33 -6.78 16 10 C 0.51 6.66 7.82 -10.98 -0.09 6.57 16 11 O -0.52 -9.38 16.03 5.55 0.09 -9.29 16 12 C -0.08 -0.94 5.83 -29.04 -0.17 -1.11 16 13 C -0.17 -2.97 4.38 -104.58 -0.46 -3.43 16 14 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 15 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 16 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 17 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 18 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 19 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.63 13.67 55.48 0.76 -24.88 16 22 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.19 -4.21 9.99 -39.39 -0.39 -4.61 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 H 0.09 0.65 6.90 -51.93 -0.36 0.30 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16 33 H 0.07 0.17 6.36 -51.93 -0.33 -0.16 16 34 H 0.40 1.96 6.20 -40.82 -0.25 1.71 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 2.29 8.47 -40.82 -0.35 1.95 16 40 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 41 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 46 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -38.27 391.74 -7.81 -46.07 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.48 Total: 4.31 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.81 Total: -7.55 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.57 Total: -42.21 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.17 Total: -22.29 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.27 -7.81 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179572511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.414 kcal (2) G-P(sol) polarization free energy of solvation -38.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds