Wall clock time and date at job start Tue Mar 31 2020 18:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00388 * 2 1 4 4 C 1.34780 * 119.99983 * 179.97438 * 2 1 3 5 5 O 1.21591 * 119.99817 * 0.02562 * 4 2 1 6 6 N 1.34775 * 120.00292 * 180.02562 * 4 2 1 7 7 C 1.46495 * 120.00172 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47156 * 180.02562 * 7 6 4 9 9 N 1.46495 * 109.47156 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09001 * 109.47460 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47040 * 300.00228 * 1 2 3 30 30 H 1.08996 * 109.47016 * 60.00310 * 1 2 3 31 31 H 1.08999 * 109.46895 * 269.99955 * 3 2 1 32 32 H 1.08998 * 109.46650 * 29.99328 * 3 2 1 33 33 H 1.08993 * 109.47426 * 149.99825 * 3 2 1 34 34 H 0.97005 * 119.99604 * 0.02562 * 6 4 2 35 35 H 1.08998 * 109.47323 * 59.99722 * 7 6 4 36 36 H 1.09005 * 109.46890 * 299.99941 * 7 6 4 37 37 H 1.08998 * 109.47672 * 59.99396 * 8 7 6 38 38 H 1.09005 * 109.46733 * 299.99498 * 8 7 6 39 39 H 0.97005 * 120.00223 * 359.97438 * 9 8 7 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5309 -2.2202 0.0005 6 7 3.4866 -1.1673 0.0010 7 6 4.2191 -2.4360 0.0010 8 6 5.7233 -2.1565 0.0023 9 7 6.4558 -3.4252 0.0017 10 6 7.8035 -3.4253 0.0021 11 8 8.4100 -2.3749 0.0035 12 6 8.5571 -4.7304 0.0021 13 6 10.0386 -4.4550 0.0032 14 6 10.7163 -4.3295 1.2023 15 6 12.0741 -4.0776 1.2067 16 6 12.7591 -3.9499 0.0053 17 8 14.0939 -3.7029 0.0064 18 6 14.7161 -3.7066 1.2025 19 1 14.1414 -3.8190 2.1099 20 6 16.0941 -3.5660 1.2676 21 7 16.7943 -3.4296 0.1623 22 14 16.9562 -3.5719 2.9247 23 1 16.6940 -4.8604 3.6147 24 1 18.4183 -3.4076 2.7227 25 1 16.4419 -2.4526 3.7542 26 6 12.0747 -4.0702 -1.1971 27 6 10.7178 -4.3277 -1.1948 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 3.9716 -0.3272 0.0014 35 1 3.9561 -3.0074 -0.8891 36 1 3.9554 -3.0078 0.8909 37 1 5.9861 -1.5852 0.8927 38 1 5.9873 -1.5846 -0.8873 39 1 5.9708 -4.2653 0.0010 40 1 8.2940 -5.3017 -0.8882 41 1 8.2935 -5.3022 0.8918 42 1 10.1832 -4.4293 2.1362 43 1 12.6027 -3.9801 2.1434 44 1 17.7582 -3.3309 0.2078 45 1 12.6037 -3.9670 -2.1329 46 1 10.1859 -4.4258 -2.1295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179572511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:21 Heat of formation + Delta-G solvation = -87.028577 kcal Electronic energy + Delta-G solvation = -26948.443857 eV Core-core repulsion = 22838.216281 eV Total energy + Delta-G solvation = -4110.227576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29436 -41.01997 -40.34552 -38.25683 -37.08439 -36.47034 -34.97707 -34.38233 -32.88604 -31.75733 -30.46618 -28.76239 -28.04974 -27.07766 -26.35597 -23.73340 -23.61415 -22.53848 -21.45144 -21.00944 -19.82868 -19.21057 -18.82103 -18.01986 -17.39149 -17.25493 -16.95157 -16.69054 -16.33125 -16.21449 -15.78782 -15.50008 -15.42945 -15.23296 -15.04545 -14.91335 -14.53773 -14.40189 -14.33502 -14.06498 -13.58585 -13.46037 -13.35753 -13.00867 -12.94846 -12.91237 -12.76494 -12.65588 -12.43142 -12.27181 -12.23776 -12.12240 -11.41624 -11.16533 -10.94381 -10.73508 -10.33539 -10.09081 -9.74147 -9.55597 -8.88275 -8.46049 -6.14396 0.63688 0.68983 1.34678 1.45154 1.50914 1.51373 1.74574 2.04834 2.18801 2.31902 2.85273 3.05070 3.21798 3.53880 3.64469 3.89600 4.03557 4.08731 4.20026 4.21755 4.26504 4.38530 4.43492 4.52307 4.52589 4.62143 4.75311 4.76039 4.82490 4.85847 4.86189 4.88547 4.96304 5.11525 5.16123 5.31458 5.33461 5.42664 5.48288 5.58786 5.73583 5.80264 5.84224 6.04033 6.25477 6.61026 6.83948 6.98280 7.35560 7.45237 7.79910 8.77145 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.001554 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.198182 B =18017.473130 C =18428.781301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.639 5.639 3 C 0.072 3.928 4 C 0.697 3.303 5 O -0.634 6.634 6 N -0.734 5.734 7 C 0.137 3.863 8 C 0.116 3.884 9 N -0.717 5.717 10 C 0.514 3.486 11 O -0.578 6.578 12 C -0.078 4.078 13 C -0.146 4.146 14 C -0.060 4.060 15 C -0.245 4.245 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.416 4.416 19 H 0.100 0.900 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.256 1.256 24 H -0.270 1.270 25 H -0.259 1.259 26 C -0.208 4.208 27 C -0.058 4.058 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.420 0.580 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.111 0.889 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.757 4.406 1.333 33.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.376 5.376 3 C -0.070 4.070 4 C 0.398 3.602 5 O -0.516 6.516 6 N -0.392 5.392 7 C 0.012 3.988 8 C -0.008 4.008 9 N -0.372 5.372 10 C 0.302 3.698 11 O -0.456 6.456 12 C -0.117 4.117 13 C -0.147 4.147 14 C -0.078 4.078 15 C -0.264 4.264 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.492 4.492 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.180 1.180 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.227 4.227 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.258 0.742 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.129 0.871 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -32.415 4.499 1.081 32.744 hybrid contribution 0.969 0.332 0.448 1.119 sum -31.446 4.831 1.529 31.852 Atomic orbital electron populations 1.21676 0.77108 1.03334 1.02746 1.47043 1.07846 1.05150 1.77577 1.21971 0.97470 0.84470 1.03083 1.16048 0.82139 0.84182 0.77807 1.90892 1.68633 1.31803 1.60281 1.44908 1.04226 1.10348 1.79754 1.21162 0.88856 0.85538 1.03208 1.21262 0.89729 0.87093 1.02758 1.45639 1.05678 1.09913 1.75974 1.21144 0.82180 0.91836 0.74679 1.90763 1.69115 1.35452 1.50299 1.20531 0.88965 0.94357 1.07847 1.19282 0.95527 1.07529 0.92411 1.20945 0.92278 0.95926 0.98642 1.21235 0.96430 1.11586 0.97184 1.19956 0.84574 0.93937 0.95431 1.83934 1.17176 1.79523 1.33531 1.21789 0.91113 1.52641 0.83629 0.88248 1.26607 0.95764 0.95847 1.03831 1.70182 1.07661 1.48187 1.29921 0.84642 0.76941 0.79901 0.74665 1.18014 1.19489 1.18337 1.20447 0.95844 1.11183 0.95211 1.20891 0.91739 0.96112 0.98799 0.91681 0.90560 0.90710 0.91448 0.88731 0.90528 0.75118 0.90804 0.90844 0.91403 0.91356 0.74244 0.84962 0.85204 0.84315 0.86527 0.91856 0.87076 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.69 127.77 1.37 2.27 16 2 N -0.64 -7.54 3.27 -890.19 -2.91 -10.45 16 3 C 0.07 0.30 10.25 127.77 1.31 1.61 16 4 C 0.70 12.44 8.28 179.05 1.48 13.92 16 5 O -0.63 -16.71 15.67 -4.00 -0.06 -16.77 16 6 N -0.73 -9.03 5.42 -478.53 -2.59 -11.63 16 7 C 0.14 1.61 5.79 86.38 0.50 2.11 16 8 C 0.12 1.53 5.79 86.38 0.50 2.03 16 9 N -0.72 -9.61 5.56 -463.05 -2.57 -12.18 16 10 C 0.51 11.30 7.82 87.66 0.69 11.98 16 11 O -0.58 -19.51 16.03 -3.05 -0.05 -19.55 16 12 C -0.08 -1.43 5.83 29.10 0.17 -1.26 16 13 C -0.15 -4.56 4.38 -19.84 -0.09 -4.65 16 14 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 15 C -0.25 -11.24 9.17 22.39 0.21 -11.04 16 16 C 0.11 5.83 6.65 22.58 0.15 5.98 16 17 O -0.23 -14.75 9.76 -22.72 -0.22 -14.97 16 18 C -0.42 -25.06 9.49 67.92 0.64 -24.42 16 19 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 20 C -0.02 -1.35 5.49 84.84 0.47 -0.89 16 21 N -0.92 -57.84 13.67 21.62 0.30 -57.55 16 22 Si 1.02 43.83 29.55 68.60 2.03 45.85 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 26 C -0.21 -9.34 9.99 22.39 0.22 -9.11 16 27 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 28 H 0.06 0.96 6.90 -2.39 -0.02 0.94 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.09 0.09 8.07 -2.39 -0.02 0.07 16 33 H 0.08 0.19 6.36 -2.39 -0.02 0.17 16 34 H 0.41 3.13 6.20 -92.70 -0.58 2.55 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.42 2.73 8.47 -92.70 -0.79 1.94 16 40 H 0.13 1.57 8.08 -2.39 -0.02 1.55 16 41 H 0.13 1.60 8.08 -2.39 -0.02 1.58 16 42 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 46 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -91.65 391.74 1.62 -90.03 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.34 Total: 22.40 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 8.05 Total: -15.19 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -7.79 Total: -91.81 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.33 Total: -51.30 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -91.65 1.62 -90.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179572511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.006 kcal (2) G-P(sol) polarization free energy of solvation -91.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds