Wall clock time and date at job start Tue Mar 31 2020 18:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34759 * 117.00270 * 2 1 4 4 O 1.21507 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.47449 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.39781 * 120.05777 * 359.97438 * 5 3 2 7 7 C 1.37754 * 120.05150 * 179.74422 * 6 5 3 8 8 C 1.38940 * 120.15935 * 0.55482 * 7 6 5 9 9 N 1.39639 * 119.94391 * 179.71564 * 8 7 6 10 10 C 1.34777 * 120.00143 * 335.14124 * 9 8 7 11 11 O 1.21583 * 119.99818 * 354.33750 * 10 9 8 12 12 N 1.34776 * 119.99876 * 174.05396 * 10 9 8 13 13 C 1.46503 * 119.99873 * 0.28279 * 12 10 9 14 14 C 1.46495 * 119.99929 * 180.27488 * 12 10 9 15 15 C 1.50698 * 109.46940 * 90.00148 * 14 12 10 16 16 H 1.07991 * 120.00415 * 0.02562 * 15 14 12 17 17 C 1.37882 * 119.99646 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99643 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46776 * 90.00672 * 19 17 15 21 21 H 1.48500 * 109.46761 * 210.00186 * 19 17 15 22 22 H 1.48493 * 109.47339 * 330.00309 * 19 17 15 23 23 C 1.39703 * 120.11207 * 359.44724 * 8 7 6 24 24 N 1.39958 * 120.02874 * 180.29406 * 23 8 7 25 25 C 1.46901 * 111.00096 * 119.99466 * 24 23 8 26 26 C 1.46895 * 111.00318 * 243.95653 * 24 23 8 27 27 C 1.38257 * 119.94971 * 0.27329 * 23 8 7 28 28 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46848 * 299.99720 * 1 2 3 30 30 H 1.08994 * 109.47750 * 59.99500 * 1 2 3 31 31 H 1.08007 * 119.97160 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.92380 * 180.27252 * 7 6 5 33 33 H 0.97000 * 119.99808 * 155.13562 * 9 8 7 34 34 H 1.08991 * 109.47428 * 89.99758 * 13 12 10 35 35 H 1.09000 * 109.46613 * 209.99853 * 13 12 10 36 36 H 1.08999 * 109.46881 * 329.98758 * 13 12 10 37 37 H 1.09000 * 109.47435 * 210.00425 * 14 12 10 38 38 H 1.09005 * 109.46875 * 330.00198 * 14 12 10 39 39 H 0.96999 * 119.99445 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46648 * 63.95757 * 25 24 23 41 41 H 1.08999 * 109.47476 * 183.95459 * 25 24 23 42 42 H 1.09000 * 109.47434 * 303.95865 * 25 24 23 43 43 H 1.08999 * 109.47763 * 56.04143 * 26 24 23 44 44 H 1.09002 * 109.47450 * 176.04788 * 26 24 23 45 45 H 1.09002 * 109.47051 * 296.04397 * 26 24 23 46 46 H 1.07996 * 120.08072 * 179.97438 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5363 1.2778 -0.0006 6 6 4.2987 0.1063 -0.0006 7 6 5.6744 0.1785 -0.0064 8 6 6.3085 1.4148 -0.0007 9 7 7.7032 1.4827 -0.0007 10 6 8.4280 0.4554 0.4850 11 8 7.8696 -0.4848 1.0165 12 7 9.7713 0.4677 0.3763 13 6 10.4441 1.6006 -0.2641 14 6 10.5587 -0.6518 0.8988 15 6 10.7329 -1.6899 -0.1796 16 1 10.3008 -1.5315 -1.1565 17 6 11.4450 -2.8415 0.0808 18 7 11.9716 -3.0342 1.2704 19 14 11.6604 -4.1287 -1.2558 20 1 12.8941 -3.8372 -2.0294 21 1 11.7715 -5.4731 -0.6349 22 1 10.4871 -4.0989 -2.1654 23 6 5.5531 2.5900 -0.0007 24 7 6.1937 3.8343 -0.0011 25 6 5.8247 4.6160 -1.1889 26 6 5.8998 4.5783 1.2309 27 6 4.1722 2.5228 -0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.8089 -0.8563 -0.0006 32 1 6.2615 -0.7280 -0.0109 33 1 8.1505 2.2693 -0.3503 34 1 10.6801 2.3547 0.4866 35 1 11.3646 1.2569 -0.7360 36 1 9.7880 2.0328 -1.0197 37 1 11.5367 -0.2908 1.2172 38 1 10.0404 -1.0948 1.7493 39 1 12.4723 -3.8446 1.4536 40 1 4.7578 4.8379 -1.1607 41 1 6.3894 5.5482 -1.2003 42 1 6.0528 4.0420 -2.0870 43 1 6.1826 3.9768 2.0949 44 1 6.4651 5.5102 1.2363 45 1 4.8335 4.7999 1.2759 46 1 3.5861 3.4300 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191179237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:51 Heat of formation + Delta-G solvation = -56.732237 kcal Electronic energy + Delta-G solvation = -29145.100934 eV Core-core repulsion = 25036.187105 eV Total energy + Delta-G solvation = -4108.913828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93581 -40.21794 -39.00738 -36.69446 -36.43019 -35.08529 -34.45784 -32.59757 -30.25851 -30.03050 -28.01348 -27.78446 -27.53240 -25.90195 -24.74714 -24.09584 -22.62377 -21.76587 -20.66108 -19.44501 -18.11256 -17.94859 -17.03844 -16.92288 -16.56571 -16.45644 -15.67889 -15.50324 -15.22361 -14.98952 -14.81911 -14.24674 -13.95406 -13.89585 -13.66385 -13.58602 -13.17552 -12.94576 -12.75568 -12.60732 -12.48426 -12.22539 -12.20246 -12.14703 -11.90913 -11.88680 -11.36477 -11.22971 -10.96900 -10.94118 -10.68807 -10.60555 -10.33826 -10.15952 -9.69333 -9.33235 -8.89200 -8.77592 -8.46144 -8.04779 -7.64453 -6.06979 -4.11962 0.69172 1.26757 2.45500 2.58158 3.07980 3.28908 3.36018 3.40531 3.54731 3.64911 3.95857 4.35549 4.48387 4.67670 4.81552 4.90191 4.91990 4.97437 5.09045 5.12248 5.21950 5.27270 5.28458 5.30139 5.34819 5.45311 5.52309 5.65294 5.71401 5.82987 5.87801 5.98579 6.07529 6.16669 6.24756 6.32401 6.59184 6.62590 6.71868 6.88716 7.24886 7.31080 7.43578 7.61226 7.64572 7.90225 8.18970 8.47793 8.88068 9.11979 9.53411 11.00938 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003088 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.633816 B = 9064.107751 C =10767.319214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.516 3.484 4 O -0.520 6.520 5 C -0.164 4.164 6 C -0.034 4.034 7 C -0.148 4.148 8 C 0.256 3.744 9 N -0.676 5.676 10 C 0.695 3.305 11 O -0.564 6.564 12 N -0.608 5.608 13 C 0.082 3.918 14 C 0.259 3.741 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.018 3.982 24 N -0.503 5.503 25 C 0.024 3.976 26 C 0.028 3.972 27 C -0.055 4.055 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.413 0.587 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 14.229 -3.905 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.362 3.638 4 O -0.410 6.410 5 C -0.167 4.167 6 C -0.053 4.053 7 C -0.169 4.169 8 C 0.154 3.846 9 N -0.322 5.322 10 C 0.397 3.603 11 O -0.441 6.441 12 N -0.342 5.342 13 C -0.063 4.063 14 C 0.140 3.860 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.079 4.079 24 N -0.224 5.224 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.075 4.075 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.184 0.816 33 H 0.251 0.749 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.356 13.595 -3.410 20.791 hybrid contribution -0.628 -0.027 -0.862 1.067 sum -15.984 13.568 -4.272 21.397 Atomic orbital electron populations 1.23253 0.76256 1.03698 1.02437 1.86579 1.23322 1.32760 1.84387 1.21194 0.89188 0.81227 0.72148 1.90803 1.67003 1.36090 1.47090 1.18772 0.88564 0.94667 1.14707 1.21379 0.93278 0.97706 0.92914 1.21631 0.94317 0.98459 1.02515 1.17742 0.82634 0.92367 0.91892 1.42966 1.03909 1.21496 1.63786 1.15977 0.82404 0.82139 0.79827 1.90860 1.69555 1.35005 1.48630 1.47538 1.03551 1.22838 1.60295 1.21631 0.98879 0.89078 0.96681 1.19291 0.89668 0.81816 0.95275 1.21433 1.33597 1.03357 0.98285 0.92408 1.24928 0.95463 0.97944 0.95705 1.69930 1.35440 1.27301 1.20642 0.86491 0.78375 0.80846 0.81672 1.20679 1.21071 1.19865 1.18190 0.89885 0.89933 1.09921 1.59529 1.57475 1.01824 1.03601 1.22514 0.99234 0.98095 0.92443 1.22463 0.99465 0.98405 0.91516 1.21319 0.93734 0.96950 0.95537 0.88001 0.91954 0.91969 0.84203 0.81604 0.74910 0.93443 0.90148 0.92938 0.94672 0.93549 0.92662 0.94918 0.90761 0.91062 0.90971 0.90805 0.94964 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.35 -4.19 9.80 -40.65 -0.40 -4.59 16 3 C 0.52 6.98 7.89 34.48 0.27 7.25 16 4 O -0.52 -7.88 16.13 -19.27 -0.31 -8.19 16 5 C -0.16 -2.21 5.87 -104.99 -0.62 -2.82 16 6 C -0.03 -0.46 9.60 -39.18 -0.38 -0.84 16 7 C -0.15 -2.37 8.69 -39.50 -0.34 -2.71 16 8 C 0.26 3.91 6.45 -83.50 -0.54 3.37 16 9 N -0.68 -10.74 5.08 -14.08 -0.07 -10.81 16 10 C 0.69 14.16 8.08 -86.92 -0.70 13.46 16 11 O -0.56 -13.55 13.07 5.29 0.07 -13.49 16 12 N -0.61 -12.45 2.86 -188.75 -0.54 -12.99 16 13 C 0.08 1.22 10.16 59.85 0.61 1.83 16 14 C 0.26 6.55 5.16 -5.20 -0.03 6.52 16 15 C -0.53 -14.53 9.39 -34.44 -0.32 -14.86 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 19 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.02 0.23 4.73 -83.59 -0.40 -0.16 16 24 N -0.50 -5.42 4.30 -186.72 -0.80 -6.22 16 25 C 0.02 0.21 9.28 60.07 0.56 0.77 16 26 C 0.03 0.27 9.33 60.06 0.56 0.83 16 27 C -0.05 -0.70 8.19 -38.99 -0.32 -1.02 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.69 7.60 -52.48 -0.40 1.29 16 32 H 0.17 3.11 5.77 -52.49 -0.30 2.80 16 33 H 0.41 5.55 6.06 -40.82 -0.25 5.30 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 36 H 0.05 0.65 6.45 -51.93 -0.33 0.31 16 37 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.03 0.28 7.26 -51.93 -0.38 -0.10 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 43 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.29 7.47 -51.93 -0.39 -0.10 16 46 H 0.13 1.60 6.65 -52.49 -0.35 1.25 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -33.22 386.26 -7.74 -40.96 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.55 Total: 3.76 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -0.67 Total: 14.63 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.68 Total: -55.32 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.64 Total: -26.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.22 -7.74 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191179237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.772 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds