Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34759 * 117.00270 * 2 1 4 4 O 1.21507 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.47449 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.39781 * 120.05777 * 359.97438 * 5 3 2 7 7 C 1.37754 * 120.05150 * 179.74422 * 6 5 3 8 8 C 1.38940 * 120.15935 * 0.55482 * 7 6 5 9 9 N 1.39639 * 119.94391 * 179.71564 * 8 7 6 10 10 C 1.34777 * 120.00143 * 335.14124 * 9 8 7 11 11 O 1.21583 * 119.99818 * 354.33750 * 10 9 8 12 12 N 1.34776 * 119.99876 * 174.05396 * 10 9 8 13 13 C 1.46503 * 119.99873 * 0.28279 * 12 10 9 14 14 C 1.46495 * 119.99929 * 180.27488 * 12 10 9 15 15 C 1.50698 * 109.46940 * 90.00148 * 14 12 10 16 16 H 1.07991 * 120.00415 * 0.02562 * 15 14 12 17 17 C 1.37882 * 119.99646 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99643 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46776 * 90.00672 * 19 17 15 21 21 H 1.48500 * 109.46761 * 210.00186 * 19 17 15 22 22 H 1.48493 * 109.47339 * 330.00309 * 19 17 15 23 23 C 1.39703 * 120.11207 * 359.44724 * 8 7 6 24 24 N 1.39958 * 120.02874 * 180.29406 * 23 8 7 25 25 C 1.46901 * 111.00096 * 119.99466 * 24 23 8 26 26 C 1.46895 * 111.00318 * 243.95653 * 24 23 8 27 27 C 1.38257 * 119.94971 * 0.27329 * 23 8 7 28 28 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46848 * 299.99720 * 1 2 3 30 30 H 1.08994 * 109.47750 * 59.99500 * 1 2 3 31 31 H 1.08007 * 119.97160 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.92380 * 180.27252 * 7 6 5 33 33 H 0.97000 * 119.99808 * 155.13562 * 9 8 7 34 34 H 1.08991 * 109.47428 * 89.99758 * 13 12 10 35 35 H 1.09000 * 109.46613 * 209.99853 * 13 12 10 36 36 H 1.08999 * 109.46881 * 329.98758 * 13 12 10 37 37 H 1.09000 * 109.47435 * 210.00425 * 14 12 10 38 38 H 1.09005 * 109.46875 * 330.00198 * 14 12 10 39 39 H 0.96999 * 119.99445 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46648 * 63.95757 * 25 24 23 41 41 H 1.08999 * 109.47476 * 183.95459 * 25 24 23 42 42 H 1.09000 * 109.47434 * 303.95865 * 25 24 23 43 43 H 1.08999 * 109.47763 * 56.04143 * 26 24 23 44 44 H 1.09002 * 109.47450 * 176.04788 * 26 24 23 45 45 H 1.09002 * 109.47051 * 296.04397 * 26 24 23 46 46 H 1.07996 * 120.08072 * 179.97438 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5363 1.2778 -0.0006 6 6 4.2987 0.1063 -0.0006 7 6 5.6744 0.1785 -0.0064 8 6 6.3085 1.4148 -0.0007 9 7 7.7032 1.4827 -0.0007 10 6 8.4280 0.4554 0.4850 11 8 7.8696 -0.4848 1.0165 12 7 9.7713 0.4677 0.3763 13 6 10.4441 1.6006 -0.2641 14 6 10.5587 -0.6518 0.8988 15 6 10.7329 -1.6899 -0.1796 16 1 10.3008 -1.5315 -1.1565 17 6 11.4450 -2.8415 0.0808 18 7 11.9716 -3.0342 1.2704 19 14 11.6604 -4.1287 -1.2558 20 1 12.8941 -3.8372 -2.0294 21 1 11.7715 -5.4731 -0.6349 22 1 10.4871 -4.0989 -2.1654 23 6 5.5531 2.5900 -0.0007 24 7 6.1937 3.8343 -0.0011 25 6 5.8247 4.6160 -1.1889 26 6 5.8998 4.5783 1.2309 27 6 4.1722 2.5228 -0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.8089 -0.8563 -0.0006 32 1 6.2615 -0.7280 -0.0109 33 1 8.1505 2.2693 -0.3503 34 1 10.6801 2.3547 0.4866 35 1 11.3646 1.2569 -0.7360 36 1 9.7880 2.0328 -1.0197 37 1 11.5367 -0.2908 1.2172 38 1 10.0404 -1.0948 1.7493 39 1 12.4723 -3.8446 1.4536 40 1 4.7578 4.8379 -1.1607 41 1 6.3894 5.5482 -1.2003 42 1 6.0528 4.0420 -2.0870 43 1 6.1826 3.9768 2.0949 44 1 6.4651 5.5102 1.2363 45 1 4.8335 4.7999 1.2759 46 1 3.5861 3.4300 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191179237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = -77.694556 kcal Electronic energy + Delta-G solvation = -29146.009928 eV Core-core repulsion = 25036.187105 eV Total energy + Delta-G solvation = -4109.822823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12296 -41.39202 -40.24429 -37.65141 -37.49810 -36.67629 -35.91553 -34.62235 -31.48178 -31.09493 -29.63499 -28.52750 -28.48435 -27.37614 -25.67338 -25.55888 -24.20309 -22.90401 -21.68060 -20.91107 -19.44216 -18.94956 -18.67154 -18.34921 -18.04972 -17.40076 -16.83696 -16.72726 -16.57244 -16.29530 -15.96498 -15.85891 -15.15257 -14.89139 -14.76169 -14.66520 -14.48127 -14.38584 -13.91827 -13.85833 -13.55798 -13.45509 -13.28356 -13.12274 -13.07985 -12.94408 -12.79952 -12.61959 -12.50447 -12.42132 -12.16679 -11.83170 -11.77485 -11.73430 -11.59291 -10.94442 -10.60745 -9.97295 -9.63791 -9.57654 -9.05586 -8.19112 -6.33524 -0.43920 0.17910 1.31950 1.39760 1.42452 1.52280 1.63844 1.69836 2.14530 2.41233 2.69067 2.78096 3.01974 3.11320 3.68201 3.74470 3.99070 4.11852 4.18699 4.29437 4.29685 4.33496 4.39379 4.42438 4.56968 4.66098 4.66527 4.69605 4.81133 4.84276 4.93341 4.98626 5.00306 5.03501 5.08771 5.17911 5.23047 5.26293 5.38990 5.56292 5.68719 5.79755 5.87855 6.05890 6.08226 6.23196 6.62798 6.75024 6.99735 7.32898 7.56941 8.87486 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003088 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.633816 B = 9064.107751 C =10767.319214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.519 3.481 4 O -0.537 6.537 5 C -0.163 4.163 6 C -0.029 4.029 7 C -0.164 4.164 8 C 0.233 3.767 9 N -0.657 5.657 10 C 0.692 3.308 11 O -0.610 6.610 12 N -0.616 5.616 13 C 0.077 3.923 14 C 0.275 3.725 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.273 1.273 23 C 0.037 3.963 24 N -0.511 5.511 25 C 0.024 3.976 26 C 0.028 3.972 27 C -0.051 4.051 28 H 0.132 0.868 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.152 0.848 32 H 0.134 0.866 33 H 0.425 0.575 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.003 0.997 39 H 0.267 0.733 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.037 0.963 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.561 15.909 -5.425 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.366 3.634 4 O -0.429 6.429 5 C -0.166 4.166 6 C -0.048 4.048 7 C -0.186 4.186 8 C 0.132 3.868 9 N -0.305 5.305 10 C 0.394 3.606 11 O -0.490 6.490 12 N -0.350 5.350 13 C -0.065 4.065 14 C 0.154 3.846 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.060 4.060 24 N -0.232 5.232 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.072 4.072 28 H 0.150 0.850 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.152 0.848 33 H 0.266 0.734 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.021 0.979 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.056 0.944 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.367 15.343 -4.965 22.976 hybrid contribution -0.455 -0.484 -0.366 0.758 sum -16.822 14.859 -5.331 23.069 Atomic orbital electron populations 1.23598 0.74156 1.05876 1.02758 1.86569 1.25397 1.31759 1.83811 1.21122 0.89033 0.81493 0.71730 1.90792 1.67317 1.36725 1.48065 1.18909 0.88946 0.94768 1.13947 1.21399 0.92330 0.98626 0.92406 1.21402 0.95089 0.97812 1.04248 1.17897 0.82243 0.93087 0.93534 1.42557 1.04035 1.20592 1.63269 1.16101 0.82396 0.82478 0.79605 1.90835 1.70491 1.37060 1.50579 1.47389 1.03714 1.23164 1.60712 1.21908 0.98982 0.87715 0.97909 1.18743 0.89248 0.83039 0.93604 1.21693 1.33471 1.04328 0.98461 0.92869 1.25805 0.95093 1.00065 0.97962 1.70044 1.36110 1.28067 1.22517 0.85440 0.78725 0.77963 0.78820 1.18958 1.20755 1.19821 1.18178 0.89688 0.90330 1.07832 1.59585 1.57346 1.01337 1.04971 1.22596 0.99898 0.98583 0.91194 1.22509 1.00246 0.98812 0.90255 1.21474 0.93696 0.97176 0.94811 0.84991 0.91753 0.91557 0.82985 0.84798 0.73365 0.90851 0.90538 0.89861 0.95176 0.97900 0.92412 0.94530 0.88520 0.91265 0.92512 0.88475 0.94399 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.62 16 2 O -0.36 -7.99 9.80 -56.70 -0.56 -8.54 16 3 C 0.52 13.36 7.89 70.25 0.55 13.92 16 4 O -0.54 -15.46 16.13 19.81 0.32 -15.14 16 5 C -0.16 -4.22 5.87 -20.10 -0.12 -4.34 16 6 C -0.03 -0.79 9.60 22.53 0.22 -0.57 16 7 C -0.16 -5.43 8.69 22.32 0.19 -5.24 16 8 C 0.23 7.12 6.45 38.42 0.25 7.37 16 9 N -0.66 -20.76 5.08 -316.72 -1.61 -22.37 16 10 C 0.69 29.04 8.08 179.05 1.45 30.49 16 11 O -0.61 -31.00 13.07 -3.98 -0.05 -31.05 16 12 N -0.62 -25.67 2.86 -869.33 -2.48 -28.15 16 13 C 0.08 2.21 10.16 127.77 1.30 3.51 16 14 C 0.28 14.50 5.16 85.63 0.44 14.94 16 15 C -0.54 -30.53 9.39 25.60 0.24 -30.29 16 16 H 0.05 2.98 7.81 -2.92 -0.02 2.96 16 17 C 0.01 0.56 5.46 84.66 0.46 1.02 16 18 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 19 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.04 0.91 4.73 38.20 0.18 1.09 16 24 N -0.51 -9.78 4.30 -744.65 -3.20 -12.98 16 25 C 0.02 0.33 9.28 127.69 1.19 1.52 16 26 C 0.03 0.46 9.33 127.69 1.19 1.65 16 27 C -0.05 -1.22 8.19 22.65 0.19 -1.03 16 28 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.15 3.69 7.60 -2.91 -0.02 3.67 16 32 H 0.13 5.39 5.77 -2.91 -0.02 5.37 16 33 H 0.43 10.77 6.06 -92.71 -0.56 10.21 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 36 H 0.08 1.86 6.45 -2.39 -0.02 1.84 16 37 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 38 H 0.00 0.17 7.42 -2.38 -0.02 0.16 16 39 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.04 0.50 7.26 -2.39 -0.02 0.48 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 43 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 44 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.04 0.59 7.47 -2.39 -0.02 0.57 16 46 H 0.15 3.17 6.65 -2.91 -0.02 3.15 16 Total: -1.00 -74.51 386.26 4.09 -70.42 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.44 Total: 20.81 kcal Atomic # 6 Polarization: 26.73 SS G_CDS: 8.92 Total: 35.65 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -7.01 Total: -118.47 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.29 Total: -54.74 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.51 4.09 -70.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191179237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.278 kcal (2) G-P(sol) polarization free energy of solvation -74.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds