Wall clock time and date at job start Tue Mar 31 2020 18:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34905 * 116.99492 * 2 1 4 4 O 1.21624 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.46470 * 120.00129 * 180.02562 * 3 2 1 6 6 C 1.38015 * 126.18512 * 179.97438 * 5 3 2 7 7 C 1.40145 * 107.10340 * 180.02562 * 6 5 3 8 8 N 1.40789 * 126.11360 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99782 * 0.02562 * 8 7 6 10 10 O 1.21598 * 120.00289 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99582 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00005 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47310 * 270.00108 * 12 11 9 14 14 H 1.07997 * 119.99940 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00037 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00056 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00093 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46924 * 89.99863 * 17 15 13 19 19 H 1.48499 * 109.47472 * 209.99850 * 17 15 13 20 20 H 1.48501 * 109.47283 * 330.00165 * 17 15 13 21 21 C 1.46499 * 120.00337 * 359.97438 * 11 9 8 22 22 C 1.53000 * 109.46840 * 270.00307 * 21 11 9 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 C 1.35925 * 107.77019 * 0.22647 * 7 6 5 26 26 N 1.35830 * 108.79406 * 359.62645 * 25 7 6 27 27 C 1.46503 * 125.65249 * 180.14020 * 26 25 7 28 28 H 1.08999 * 109.47262 * 299.99497 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00553 * 1 2 3 30 30 H 1.09007 * 109.46194 * 180.02562 * 1 2 3 31 31 H 1.07996 * 126.44983 * 359.97438 * 6 5 3 32 32 H 0.96993 * 119.99939 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.46888 * 29.99915 * 12 11 9 34 34 H 1.08994 * 109.47490 * 149.99977 * 12 11 9 35 35 H 0.96994 * 120.00272 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47391 * 149.99977 * 21 11 9 37 37 H 1.09001 * 109.46813 * 30.00033 * 21 11 9 38 38 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 39 39 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 40 40 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 41 41 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 42 42 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 43 43 H 1.07999 * 125.60401 * 179.77884 * 25 7 6 44 44 H 1.08997 * 109.47410 * 270.27414 * 27 26 25 45 45 H 1.09001 * 109.46905 * 30.27954 * 27 26 25 46 46 H 1.09004 * 109.47041 * 150.26938 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2021 0.0000 4 8 1.4019 2.2221 -0.0005 5 6 3.5270 1.2789 -0.0006 6 6 4.2823 2.4340 -0.0011 7 6 5.6290 2.0460 -0.0021 8 7 6.7412 2.9091 -0.0035 9 6 6.5580 4.2443 -0.0034 10 8 5.4321 4.7036 -0.0026 11 7 7.6228 5.0705 -0.0052 12 6 7.4238 6.5220 -0.0056 13 6 7.3536 7.0190 -1.4266 14 1 7.4483 6.3234 -2.2472 15 6 7.1686 8.3618 -1.6789 16 7 7.1078 8.7956 -2.9190 17 14 7.0041 9.5649 -0.2595 18 1 8.3476 10.0746 0.1156 19 1 6.1408 10.7009 -0.6709 20 1 6.3933 8.8756 0.9055 21 6 8.9793 4.5173 -0.0067 22 6 9.4534 4.3254 1.4353 23 6 10.6576 5.1478 1.8983 24 6 10.8073 3.6456 1.6492 25 6 5.6692 0.6873 -0.0073 26 7 4.3968 0.2119 -0.0012 27 6 4.0136 -1.2022 -0.0010 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 3.9064 3.4464 -0.0016 32 1 7.6393 2.5428 -0.0045 33 1 6.4933 6.7612 0.5093 34 1 8.2567 7.0031 0.5068 35 1 6.9773 9.7402 -3.0965 36 1 9.6512 5.2039 -0.5217 37 1 8.9789 3.5558 -0.5201 38 1 8.6691 4.1258 2.1655 39 1 11.1119 5.8259 1.1759 40 1 10.6657 5.4895 2.9334 41 1 10.9138 2.9991 2.5204 42 1 11.3601 3.3348 0.7628 43 1 6.5655 0.0848 -0.0127 44 1 3.9179 -1.5528 -1.0285 45 1 4.7779 -1.7856 0.5124 46 1 3.0599 -1.3201 0.5136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268401310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:07 Heat of formation + Delta-G solvation = -14.806923 kcal Electronic energy + Delta-G solvation = -29008.583061 eV Core-core repulsion = 24901.487251 eV Total energy + Delta-G solvation = -4107.095810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51732 -40.03069 -39.39532 -37.32688 -36.47683 -34.91188 -34.25417 -32.52363 -31.74478 -29.75053 -28.39917 -27.53736 -26.57188 -25.74336 -23.45571 -22.55097 -22.23489 -20.89379 -20.42238 -20.28797 -18.89555 -18.29091 -17.22731 -16.93692 -16.83973 -16.56463 -15.86497 -15.54490 -15.33818 -15.08686 -14.82129 -14.41102 -13.93275 -13.86525 -13.82160 -13.38207 -13.29856 -12.93911 -12.72884 -12.50878 -12.46407 -12.23744 -12.12977 -12.07358 -11.68889 -11.50706 -11.43611 -10.96414 -10.91731 -10.70827 -10.53273 -10.45314 -10.28036 -9.99903 -9.81894 -9.47088 -9.17542 -8.52197 -8.41388 -7.84698 -7.35951 -6.01736 -3.99836 1.22766 2.50663 2.61980 2.64571 3.22553 3.28670 3.33202 3.43543 3.46686 3.85463 4.04188 4.35242 4.46546 4.64124 4.69632 4.89444 4.89735 4.95439 4.99691 4.99736 5.03443 5.12136 5.27298 5.31326 5.34834 5.42446 5.53190 5.65213 5.67411 5.82399 5.92794 5.97903 6.03536 6.18315 6.22429 6.38229 6.52509 6.67855 6.78608 7.00481 7.09957 7.32571 7.36510 7.59166 7.71614 7.73866 8.54825 8.57151 9.02111 9.27404 9.59129 11.11810 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003319 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.935892 B = 8434.280620 C =10409.651062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.537 3.463 4 O -0.492 6.492 5 C -0.045 4.045 6 C -0.087 4.087 7 C 0.092 3.908 8 N -0.670 5.670 9 C 0.704 3.296 10 O -0.565 6.565 11 N -0.600 5.600 12 C 0.233 3.767 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.873 3.127 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.143 3.857 22 C -0.171 4.171 23 C -0.175 4.175 24 C -0.180 4.180 25 C -0.015 4.015 26 N -0.422 5.422 27 C 0.074 3.926 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.180 0.820 32 H 0.402 0.598 33 H 0.042 0.958 34 H 0.027 0.973 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.172 0.828 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -23.450 9.106 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.383 3.617 4 O -0.379 6.379 5 C -0.155 4.155 6 C -0.115 4.115 7 C -0.010 4.010 8 N -0.320 5.320 9 C 0.406 3.594 10 O -0.441 6.441 11 N -0.334 5.334 12 C 0.112 3.888 13 C -0.566 4.566 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.700 3.300 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.187 1.187 21 C 0.018 3.982 22 C -0.191 4.191 23 C -0.212 4.212 24 C -0.218 4.218 25 C -0.152 4.152 26 N -0.100 5.100 27 C -0.067 4.067 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.197 0.803 32 H 0.238 0.762 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.189 0.811 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.557 -22.893 8.989 24.643 hybrid contribution 0.372 0.522 0.535 0.835 sum -1.185 -22.370 9.524 24.342 Atomic orbital electron populations 1.23247 0.76140 1.03432 1.02873 1.86576 1.23597 1.32994 1.85291 1.19777 0.86960 0.81596 0.73402 1.90942 1.65326 1.35670 1.45963 1.19282 0.86486 0.87588 1.22158 1.21879 0.90194 0.98388 1.01087 1.16643 0.87706 0.88377 1.08240 1.42243 1.07037 1.04462 1.78225 1.15783 0.85309 0.79921 0.78389 1.90831 1.21798 1.74915 1.56558 1.47125 1.02850 1.07738 1.75696 1.19580 0.97264 0.73731 0.98187 1.21368 1.50084 0.93701 0.91414 0.90774 1.24834 0.94551 0.98101 0.95491 1.69896 1.50036 1.15140 1.18645 0.86887 0.78379 0.81299 0.83442 1.20195 1.21020 1.18706 1.20990 0.85283 0.98923 0.92997 1.22973 0.91689 1.05164 0.99287 1.23011 1.02100 0.93756 1.02354 1.22926 1.00012 0.95700 1.03114 1.21205 0.87413 0.92927 1.13684 1.43600 1.04947 1.06015 1.55408 1.22183 1.02998 0.77806 1.03682 0.91804 0.91722 0.88203 0.80310 0.76208 0.93977 0.95475 0.92645 0.89199 0.91578 0.87804 0.88339 0.89163 0.89124 0.88706 0.81094 0.90706 0.89807 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.37 -4.09 7.98 -41.05 -0.33 -4.42 16 3 C 0.54 8.11 7.92 34.05 0.27 8.38 16 4 O -0.49 -9.04 16.68 -19.36 -0.32 -9.36 16 5 C -0.05 -0.69 6.88 -82.01 -0.56 -1.26 16 6 C -0.09 -1.58 9.44 -38.95 -0.37 -1.95 16 7 C 0.09 1.44 6.91 -83.85 -0.58 0.87 16 8 N -0.67 -10.75 5.34 -14.39 -0.08 -10.83 16 9 C 0.70 14.85 8.25 -86.92 -0.72 14.14 16 10 O -0.57 -14.39 13.10 5.28 0.07 -14.32 16 11 N -0.60 -12.27 2.46 -180.80 -0.44 -12.72 16 12 C 0.23 5.72 4.23 -5.19 -0.02 5.69 16 13 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 14 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 17 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 C 0.14 2.17 5.45 -4.04 -0.02 2.15 16 22 C -0.17 -2.18 6.01 -90.62 -0.54 -2.73 16 23 C -0.18 -2.07 10.18 -26.73 -0.27 -2.34 16 24 C -0.18 -1.77 10.25 -26.73 -0.27 -2.05 16 25 C -0.02 -0.18 11.42 -16.61 -0.19 -0.37 16 26 N -0.42 -4.88 3.17 -120.04 -0.38 -5.26 16 27 C 0.07 0.52 10.56 59.85 0.63 1.15 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.18 3.94 5.97 -52.49 -0.31 3.63 16 32 H 0.40 4.97 6.56 -40.82 -0.27 4.70 16 33 H 0.04 1.13 6.48 -51.93 -0.34 0.79 16 34 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.09 1.45 7.81 -51.93 -0.41 1.04 16 37 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 38 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.67 6.14 -51.93 -0.32 0.35 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -37.74 386.90 -8.17 -45.91 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.60 Total: 5.77 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -2.02 Total: 9.51 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.13 Total: -56.10 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.58 Total: -28.10 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.74 -8.17 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268401310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.103 kcal (2) G-P(sol) polarization free energy of solvation -37.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds