Wall clock time and date at job start Tue Mar 31 2020 18:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34905 * 116.99492 * 2 1 4 4 O 1.21624 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.46470 * 120.00129 * 180.02562 * 3 2 1 6 6 C 1.38015 * 126.18512 * 179.97438 * 5 3 2 7 7 C 1.40145 * 107.10340 * 180.02562 * 6 5 3 8 8 N 1.40789 * 126.11360 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99782 * 0.02562 * 8 7 6 10 10 O 1.21598 * 120.00289 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99582 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00005 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47310 * 270.00108 * 12 11 9 14 14 H 1.07997 * 119.99940 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00037 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00056 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00093 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46924 * 89.99863 * 17 15 13 19 19 H 1.48499 * 109.47472 * 209.99850 * 17 15 13 20 20 H 1.48501 * 109.47283 * 330.00165 * 17 15 13 21 21 C 1.46499 * 120.00337 * 359.97438 * 11 9 8 22 22 C 1.53000 * 109.46840 * 270.00307 * 21 11 9 23 23 C 1.53003 * 117.49371 * 243.61805 * 22 21 11 24 24 C 1.53001 * 117.49608 * 174.99880 * 22 21 11 25 25 C 1.35925 * 107.77019 * 0.22647 * 7 6 5 26 26 N 1.35830 * 108.79406 * 359.62645 * 25 7 6 27 27 C 1.46503 * 125.65249 * 180.14020 * 26 25 7 28 28 H 1.08999 * 109.47262 * 299.99497 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00553 * 1 2 3 30 30 H 1.09007 * 109.46194 * 180.02562 * 1 2 3 31 31 H 1.07996 * 126.44983 * 359.97438 * 6 5 3 32 32 H 0.96993 * 119.99939 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.46888 * 29.99915 * 12 11 9 34 34 H 1.08994 * 109.47490 * 149.99977 * 12 11 9 35 35 H 0.96994 * 120.00272 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47391 * 149.99977 * 21 11 9 37 37 H 1.09001 * 109.46813 * 30.00033 * 21 11 9 38 38 H 1.08995 * 115.55630 * 29.32490 * 22 21 11 39 39 H 1.08998 * 117.50656 * 0.02562 * 23 22 21 40 40 H 1.09001 * 117.49674 * 145.02590 * 23 22 21 41 41 H 1.09003 * 117.49710 * 214.97494 * 24 22 21 42 42 H 1.08998 * 117.50185 * 359.97438 * 24 22 21 43 43 H 1.07999 * 125.60401 * 179.77884 * 25 7 6 44 44 H 1.08997 * 109.47410 * 270.27414 * 27 26 25 45 45 H 1.09001 * 109.46905 * 30.27954 * 27 26 25 46 46 H 1.09004 * 109.47041 * 150.26938 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2021 0.0000 4 8 1.4019 2.2221 -0.0005 5 6 3.5270 1.2789 -0.0006 6 6 4.2823 2.4340 -0.0011 7 6 5.6290 2.0460 -0.0021 8 7 6.7412 2.9091 -0.0035 9 6 6.5580 4.2443 -0.0034 10 8 5.4321 4.7036 -0.0026 11 7 7.6228 5.0705 -0.0052 12 6 7.4238 6.5220 -0.0056 13 6 7.3536 7.0190 -1.4266 14 1 7.4483 6.3234 -2.2472 15 6 7.1686 8.3618 -1.6789 16 7 7.1078 8.7956 -2.9190 17 14 7.0041 9.5649 -0.2595 18 1 8.3476 10.0746 0.1156 19 1 6.1408 10.7009 -0.6709 20 1 6.3933 8.8756 0.9055 21 6 8.9793 4.5173 -0.0067 22 6 9.4534 4.3254 1.4353 23 6 10.6576 5.1478 1.8983 24 6 10.8073 3.6456 1.6492 25 6 5.6692 0.6873 -0.0073 26 7 4.3968 0.2119 -0.0012 27 6 4.0136 -1.2022 -0.0010 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 3.9064 3.4464 -0.0016 32 1 7.6393 2.5428 -0.0045 33 1 6.4933 6.7612 0.5093 34 1 8.2567 7.0031 0.5068 35 1 6.9773 9.7402 -3.0965 36 1 9.6512 5.2039 -0.5217 37 1 8.9789 3.5558 -0.5201 38 1 8.6691 4.1258 2.1655 39 1 11.1119 5.8259 1.1759 40 1 10.6657 5.4895 2.9334 41 1 10.9138 2.9991 2.5204 42 1 11.3601 3.3348 0.7628 43 1 6.5655 0.0848 -0.0127 44 1 3.9179 -1.5528 -1.0285 45 1 4.7779 -1.7856 0.5124 46 1 3.0599 -1.3201 0.5136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268401310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:06 Heat of formation + Delta-G solvation = -40.583278 kcal Electronic energy + Delta-G solvation = -29009.700808 eV Core-core repulsion = 24901.487251 eV Total energy + Delta-G solvation = -4108.213557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63858 -41.29761 -40.72173 -38.43107 -37.57873 -36.37407 -35.79214 -34.57784 -32.91857 -30.95619 -30.13080 -28.38936 -27.78174 -26.88860 -24.86873 -24.07369 -23.12389 -22.13852 -21.62169 -21.41371 -20.29058 -19.48746 -19.07317 -18.52421 -18.02963 -17.58710 -17.29304 -16.59232 -16.47590 -16.19921 -16.12890 -15.94561 -15.46188 -15.02205 -14.93177 -14.82897 -14.36566 -14.34731 -14.15288 -13.71021 -13.60173 -13.47136 -13.34988 -13.22192 -12.99237 -12.84063 -12.63735 -12.41226 -12.24440 -12.03468 -11.91394 -11.89397 -11.75520 -11.59136 -11.26484 -10.94838 -10.79609 -10.74088 -9.60983 -9.45195 -8.58433 -8.31783 -6.35797 0.08610 1.31543 1.36501 1.45505 1.48048 1.50268 1.56871 1.96571 2.04291 2.32988 2.51406 2.92436 3.02580 3.10786 3.70836 3.89836 4.00724 4.04551 4.13018 4.19384 4.28955 4.30966 4.36221 4.43375 4.52834 4.55350 4.66101 4.71917 4.75819 4.82402 4.88706 4.90667 4.91502 5.00407 5.12020 5.18240 5.25335 5.32561 5.38048 5.48806 5.60004 5.68202 5.93227 6.12264 6.25650 6.31147 6.62407 6.65221 7.12645 7.26070 7.71345 8.85391 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003319 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.935892 B = 8434.280620 C =10409.651062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.540 3.460 4 O -0.541 6.541 5 C -0.060 4.060 6 C -0.133 4.133 7 C 0.050 3.950 8 N -0.647 5.647 9 C 0.695 3.305 10 O -0.622 6.622 11 N -0.607 5.607 12 C 0.247 3.753 13 C -0.533 4.533 14 H 0.028 0.972 15 C 0.012 3.988 16 N -0.946 5.946 17 Si 0.945 3.055 18 H -0.247 1.247 19 H -0.283 1.283 20 H -0.259 1.259 21 C 0.140 3.860 22 C -0.185 4.185 23 C -0.189 4.189 24 C -0.143 4.143 25 C 0.037 3.963 26 N -0.403 5.403 27 C 0.063 3.937 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.145 0.855 31 H 0.125 0.875 32 H 0.422 0.578 33 H 0.016 0.984 34 H 0.050 0.950 35 H 0.268 0.732 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.232 0.768 44 H 0.092 0.908 45 H 0.125 0.875 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -27.554 10.995 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.387 3.613 4 O -0.431 6.431 5 C -0.171 4.171 6 C -0.163 4.163 7 C -0.050 4.050 8 N -0.298 5.298 9 C 0.396 3.604 10 O -0.502 6.502 11 N -0.340 5.340 12 C 0.124 3.876 13 C -0.571 4.571 14 H 0.046 0.954 15 C -0.186 4.186 16 N -0.586 5.586 17 Si 0.768 3.232 18 H -0.171 1.171 19 H -0.209 1.209 20 H -0.183 1.183 21 C 0.017 3.983 22 C -0.204 4.204 23 C -0.226 4.226 24 C -0.180 4.180 25 C -0.102 4.102 26 N -0.078 5.078 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.143 0.857 32 H 0.262 0.738 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.248 0.752 44 H 0.111 0.889 45 H 0.143 0.857 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.694 -27.128 10.887 29.239 hybrid contribution -0.370 1.575 -0.138 1.624 sum 0.325 -25.553 10.750 27.724 Atomic orbital electron populations 1.23622 0.74223 1.06192 1.02422 1.86571 1.25322 1.30387 1.84366 1.19863 0.87048 0.81990 0.72359 1.90914 1.66317 1.37503 1.48400 1.19039 0.86930 0.88108 1.23051 1.21522 0.92718 0.97393 1.04623 1.16902 0.86364 0.90200 1.11535 1.41780 1.08315 1.02510 1.77179 1.16066 0.84502 0.81587 0.78222 1.90822 1.24079 1.76379 1.58927 1.47046 1.05006 1.06254 1.75693 1.19155 0.96678 0.76713 0.95055 1.21591 1.49762 0.93307 0.92474 0.95353 1.25809 0.94013 1.00297 0.98506 1.70050 1.51519 1.15876 1.21188 0.85755 0.79705 0.78256 0.79528 1.17121 1.20895 1.18289 1.21246 0.82135 0.99550 0.95342 1.22702 0.92682 1.08013 0.97044 1.23102 1.01532 0.95421 1.02516 1.23040 0.96370 0.94295 1.04340 1.21962 0.88821 0.91243 1.08183 1.44008 1.04329 1.07159 1.52292 1.22650 1.04578 0.74801 1.05494 0.92195 0.92432 0.83666 0.85700 0.73838 0.96639 0.93223 0.92351 0.90411 0.88765 0.88719 0.89064 0.88571 0.86980 0.87124 0.75162 0.88942 0.85681 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.62 16 2 O -0.35 -7.40 7.98 -58.20 -0.46 -7.87 16 3 C 0.54 16.91 7.92 69.97 0.55 17.47 16 4 O -0.54 -21.57 16.68 19.43 0.32 -21.24 16 5 C -0.06 -1.87 6.88 40.32 0.28 -1.59 16 6 C -0.13 -5.24 9.44 22.68 0.21 -5.02 16 7 C 0.05 1.55 6.91 37.63 0.26 1.81 16 8 N -0.65 -20.72 5.34 -317.69 -1.70 -22.42 16 9 C 0.69 30.90 8.25 179.06 1.48 32.38 16 10 O -0.62 -34.66 13.10 -4.03 -0.05 -34.71 16 11 N -0.61 -25.72 2.46 -844.19 -2.07 -27.79 16 12 C 0.25 12.60 4.23 85.63 0.36 12.96 16 13 C -0.53 -32.50 9.94 25.60 0.25 -32.25 16 14 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 15 C 0.01 0.70 5.47 84.65 0.46 1.17 16 16 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 17 Si 0.94 46.29 27.47 68.60 1.88 48.17 16 18 H -0.25 -10.93 7.11 99.48 0.71 -10.23 16 19 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 21 C 0.14 4.17 5.45 86.38 0.47 4.64 16 22 C -0.18 -4.36 6.01 -10.79 -0.06 -4.42 16 23 C -0.19 -4.04 10.18 30.60 0.31 -3.73 16 24 C -0.14 -2.26 10.25 30.60 0.31 -1.95 16 25 C 0.04 0.71 11.42 83.54 0.95 1.67 16 26 N -0.40 -8.07 3.17 -533.70 -1.69 -9.76 16 27 C 0.06 0.56 10.56 127.77 1.35 1.91 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.15 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.13 6.31 5.97 -2.91 -0.02 6.29 16 32 H 0.42 9.51 6.56 -92.71 -0.61 8.91 16 33 H 0.02 0.87 6.48 -2.39 -0.02 0.86 16 34 H 0.05 2.30 7.50 -2.39 -0.02 2.28 16 35 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 36 H 0.08 2.50 7.81 -2.39 -0.02 2.48 16 37 H 0.09 2.20 6.36 -2.39 -0.02 2.18 16 38 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.09 2.08 8.03 -2.39 -0.02 2.07 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.23 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.10 0.94 6.14 -2.38 -0.01 0.92 16 Total: -1.00 -94.99 386.90 5.27 -89.72 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.35 Total: 20.57 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 8.39 Total: 26.66 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.16 Total: -121.29 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -0.19 Total: -63.83 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.88 Total: 48.17 kcal Total: -94.99 5.27 -89.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268401310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.133 kcal (2) G-P(sol) polarization free energy of solvation -94.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds