Wall clock time and date at job start Tue Mar 31 2020 18:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99851 * 2 1 4 4 O 1.21280 * 119.99745 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99798 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46954 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47076 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.46969 * 180.02562 * 7 6 5 9 9 C 1.46494 * 120.00087 * 269.99950 * 8 7 6 10 10 C 1.34784 * 119.99728 * 89.99952 * 8 7 6 11 11 O 1.21581 * 119.99971 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99771 * 180.02562 * 10 8 7 13 13 C 1.39945 * 120.00303 * 174.69267 * 12 10 8 14 14 C 1.38962 * 120.03076 * 326.34202 * 13 12 10 15 15 C 1.38160 * 120.06637 * 180.02562 * 14 13 12 16 16 C 1.38167 * 120.13414 * 359.71878 * 15 14 13 17 17 C 1.38903 * 120.07541 * 0.55828 * 16 15 14 18 18 O 1.35748 * 120.03979 * 179.71538 * 17 16 15 19 19 C 1.34825 * 117.00174 * 173.81949 * 18 17 16 20 20 H 1.07998 * 120.00242 * 354.59912 * 19 18 17 21 21 C 1.38651 * 119.99955 * 174.59544 * 19 18 17 22 22 N 1.31559 * 120.00241 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00306 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46655 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47074 * 120.00034 * 23 21 19 26 26 H 1.48496 * 109.47068 * 240.00338 * 23 21 19 27 27 C 1.38700 * 120.03782 * 146.36633 * 13 12 10 28 28 H 1.08990 * 109.47007 * 299.99557 * 1 2 3 29 29 H 1.09004 * 109.46750 * 59.99983 * 1 2 3 30 30 H 1.09007 * 109.46414 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00266 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47152 * 60.00798 * 5 3 2 33 33 H 1.09002 * 109.47721 * 300.00619 * 5 3 2 34 34 H 1.09002 * 109.46644 * 60.00358 * 6 5 3 35 35 H 1.09002 * 109.47306 * 300.00744 * 6 5 3 36 36 H 1.08992 * 109.47424 * 60.00293 * 7 6 5 37 37 H 1.09004 * 109.46765 * 300.00015 * 7 6 5 38 38 H 1.08998 * 109.47348 * 270.00371 * 9 8 7 39 39 H 1.09003 * 109.46954 * 30.00146 * 9 8 7 40 40 H 1.09007 * 109.47372 * 149.99881 * 9 8 7 41 41 H 0.97006 * 120.00159 * 354.68564 * 12 10 8 42 42 H 1.08001 * 119.96171 * 0.02562 * 14 13 12 43 43 H 1.07998 * 119.92710 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.95750 * 180.27523 * 16 15 14 45 45 H 0.96993 * 120.00379 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.07244 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6098 0.0011 7 6 5.6859 2.6098 0.0011 8 7 6.1742 3.9910 0.0022 9 6 6.4183 4.6827 -1.2659 10 6 6.3988 4.6254 1.1700 11 8 6.1966 4.0512 2.2224 12 7 6.8475 5.8963 1.1710 13 6 6.9751 6.5924 2.3783 14 6 6.0801 6.3567 3.4149 15 6 6.2050 7.0438 4.6070 16 6 7.2230 7.9629 4.7744 17 6 8.1173 8.2073 3.7400 18 8 9.1137 9.1146 3.9033 19 6 10.0219 9.2116 2.9115 20 1 9.9876 8.5247 2.0788 21 6 10.9998 10.1932 2.9605 22 7 11.0419 11.0297 3.9750 23 14 12.2577 10.3281 1.5860 24 1 11.9946 9.2780 0.5696 25 1 12.1560 11.6669 0.9517 26 1 13.6219 10.1470 2.1440 27 6 7.9945 7.5186 2.5414 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0090 0.6535 0.8907 34 1 3.7922 3.1233 0.8911 35 1 3.7928 3.1239 -0.8888 36 1 6.0492 2.0964 -0.8891 37 1 6.0492 2.0956 0.8909 38 1 7.4477 4.5117 -1.5808 39 1 5.7374 4.2992 -2.0259 40 1 6.2512 5.7519 -1.1348 41 1 7.0822 6.3285 0.3349 42 1 5.2861 5.6355 3.2885 43 1 5.5085 6.8586 5.4113 44 1 7.3207 8.4953 5.7090 45 1 11.7258 11.7167 4.0092 46 1 8.6913 7.7036 1.7373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269840307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:26 Heat of formation + Delta-G solvation = -58.682059 kcal Electronic energy + Delta-G solvation = -27909.624523 eV Core-core repulsion = 23800.626144 eV Total energy + Delta-G solvation = -4108.998379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54928 -39.95889 -38.78953 -36.87532 -35.77426 -34.97473 -34.42611 -33.27186 -32.18283 -29.46709 -28.79685 -28.25317 -27.01725 -25.73476 -25.19883 -22.78830 -21.75439 -21.39695 -20.69922 -19.67449 -18.48680 -17.87014 -17.54524 -17.20513 -16.34639 -16.19169 -15.92451 -15.62652 -15.03878 -14.91617 -14.70695 -14.33724 -14.12766 -13.88897 -13.86028 -13.53370 -13.29394 -13.20559 -12.93865 -12.82865 -12.68725 -12.45668 -12.21806 -12.09065 -11.89718 -11.69507 -11.51678 -11.08862 -10.99368 -10.94114 -10.67624 -10.40753 -10.23721 -9.96651 -9.57086 -9.54472 -9.43425 -8.81715 -8.76014 -7.64597 -7.07852 -6.41653 -4.01045 2.11026 2.31647 2.44619 2.58973 2.87887 3.12825 3.13682 3.19349 3.34172 3.93158 3.98632 4.34933 4.62774 4.66085 4.67297 4.78795 4.85460 4.98450 5.09193 5.11593 5.14368 5.21233 5.30774 5.33283 5.38848 5.40644 5.45575 5.71548 5.84283 5.94698 6.06340 6.09183 6.14745 6.25554 6.32107 6.42874 6.62228 6.83948 7.05177 7.06649 7.15767 7.27549 7.39764 7.48137 7.86859 7.88643 7.99423 8.03435 8.66351 9.04006 9.75642 10.76668 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.002065 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.128321 B =13553.797766 C =14539.496786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.535 6.535 5 C -0.137 4.137 6 C -0.122 4.122 7 C 0.135 3.865 8 N -0.634 5.634 9 C 0.076 3.924 10 C 0.705 3.295 11 O -0.567 6.567 12 N -0.682 5.682 13 C 0.198 3.802 14 C -0.203 4.203 15 C -0.063 4.063 16 C -0.202 4.202 17 C 0.169 3.831 18 O -0.178 6.178 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.258 4.258 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.402 0.598 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.402 0.598 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.269 0.731 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -21.870 -13.458 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.297 3.703 4 O -0.411 6.411 5 C -0.177 4.177 6 C -0.161 4.161 7 C 0.011 3.989 8 N -0.371 5.371 9 C -0.067 4.067 10 C 0.407 3.593 11 O -0.443 6.443 12 N -0.330 5.330 13 C 0.104 3.896 14 C -0.224 4.224 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.115 3.885 18 O -0.081 6.081 19 C -0.466 4.466 20 H 0.107 0.893 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.279 4.279 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.235 0.765 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.238 0.762 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.489 -21.187 -12.479 28.541 hybrid contribution 0.936 -0.184 -1.358 1.660 sum -13.553 -21.372 -13.838 28.843 Atomic orbital electron populations 1.21531 0.79737 1.02126 1.02403 1.45859 1.07820 1.08857 1.76778 1.20832 0.90543 0.83485 0.75452 1.90739 1.70571 1.31304 1.48468 1.21588 0.91488 1.00071 1.04592 1.21743 0.95350 0.94700 1.04302 1.21307 0.93109 0.81291 1.03172 1.46985 1.70502 1.14870 1.04792 1.21768 1.01503 0.97615 0.85859 1.15837 0.78397 0.81170 0.83908 1.90933 1.57905 1.65915 1.29576 1.42745 1.68589 1.12418 1.09200 1.17200 0.94296 0.92885 0.85207 1.20576 1.01988 1.05369 0.94503 1.20526 0.96595 0.94707 0.96340 1.20232 0.98552 1.04402 0.99014 1.19060 0.88469 0.88986 0.91983 1.84017 1.31713 1.49399 1.43004 1.21305 1.06677 1.16586 1.02068 0.89263 1.25268 0.98106 0.94990 0.98191 1.70045 1.33600 1.17067 1.29102 0.85668 0.79701 0.78485 0.79652 1.19250 1.20205 1.20188 1.20773 1.01600 1.05346 1.00230 0.92195 0.92296 0.90718 0.76471 0.88760 0.88405 0.90385 0.91202 0.90587 0.89518 0.92407 0.90657 0.91304 0.76176 0.86235 0.86667 0.86431 0.92134 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.85 0.64 1.11 16 2 N -0.74 -4.32 5.71 -67.08 -0.38 -4.71 16 3 C 0.51 4.66 7.83 -10.98 -0.09 4.57 16 4 O -0.53 -7.49 15.98 5.56 0.09 -7.40 16 5 C -0.14 -0.88 5.70 -27.88 -0.16 -1.04 16 6 C -0.12 -1.16 4.83 -26.73 -0.13 -1.28 16 7 C 0.13 1.23 5.41 -4.04 -0.02 1.21 16 8 N -0.63 -7.28 2.87 -187.35 -0.54 -7.82 16 9 C 0.08 0.60 10.16 59.84 0.61 1.21 16 10 C 0.70 11.34 8.01 -86.91 -0.70 10.65 16 11 O -0.57 -11.09 13.63 5.29 0.07 -11.02 16 12 N -0.68 -11.10 5.17 -14.24 -0.07 -11.17 16 13 C 0.20 3.98 6.27 -83.71 -0.52 3.45 16 14 C -0.20 -4.13 8.65 -39.34 -0.34 -4.47 16 15 C -0.06 -1.24 10.03 -39.64 -0.40 -1.64 16 16 C -0.20 -4.48 9.99 -39.36 -0.39 -4.87 16 17 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 18 O -0.18 -5.13 9.76 0.07 0.00 -5.13 16 19 C -0.39 -10.93 9.44 30.88 0.29 -10.64 16 20 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.41 13.67 55.48 0.76 -24.66 16 23 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 C -0.26 -5.74 9.04 -39.21 -0.35 -6.10 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.40 0.99 8.83 -40.82 -0.36 0.63 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 37 H 0.09 0.91 7.42 -51.93 -0.39 0.53 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 40 H 0.07 0.54 6.45 -51.93 -0.33 0.20 16 41 H 0.40 5.30 6.63 -40.82 -0.27 5.03 16 42 H 0.12 2.42 6.43 -52.49 -0.34 2.08 16 43 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 45 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.13 2.80 5.71 -52.49 -0.30 2.50 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -37.99 388.26 -7.63 -45.62 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.46 Total: 7.89 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.92 Total: -2.94 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.24 Total: -48.35 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.99 -7.63 -45.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269840307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.058 kcal (2) G-P(sol) polarization free energy of solvation -37.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds