Wall clock time and date at job start Tue Mar 31 2020 18:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99851 * 2 1 4 4 O 1.21280 * 119.99745 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99798 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46954 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47076 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.46969 * 180.02562 * 7 6 5 9 9 C 1.46494 * 120.00087 * 269.99950 * 8 7 6 10 10 C 1.34784 * 119.99728 * 89.99952 * 8 7 6 11 11 O 1.21581 * 119.99971 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99771 * 180.02562 * 10 8 7 13 13 C 1.39945 * 120.00303 * 174.69267 * 12 10 8 14 14 C 1.38962 * 120.03076 * 326.34202 * 13 12 10 15 15 C 1.38160 * 120.06637 * 180.02562 * 14 13 12 16 16 C 1.38167 * 120.13414 * 359.71878 * 15 14 13 17 17 C 1.38903 * 120.07541 * 0.55828 * 16 15 14 18 18 O 1.35748 * 120.03979 * 179.71538 * 17 16 15 19 19 C 1.34825 * 117.00174 * 173.81949 * 18 17 16 20 20 H 1.07998 * 120.00242 * 354.59912 * 19 18 17 21 21 C 1.38651 * 119.99955 * 174.59544 * 19 18 17 22 22 N 1.31559 * 120.00241 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00306 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46655 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47074 * 120.00034 * 23 21 19 26 26 H 1.48496 * 109.47068 * 240.00338 * 23 21 19 27 27 C 1.38700 * 120.03782 * 146.36633 * 13 12 10 28 28 H 1.08990 * 109.47007 * 299.99557 * 1 2 3 29 29 H 1.09004 * 109.46750 * 59.99983 * 1 2 3 30 30 H 1.09007 * 109.46414 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00266 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47152 * 60.00798 * 5 3 2 33 33 H 1.09002 * 109.47721 * 300.00619 * 5 3 2 34 34 H 1.09002 * 109.46644 * 60.00358 * 6 5 3 35 35 H 1.09002 * 109.47306 * 300.00744 * 6 5 3 36 36 H 1.08992 * 109.47424 * 60.00293 * 7 6 5 37 37 H 1.09004 * 109.46765 * 300.00015 * 7 6 5 38 38 H 1.08998 * 109.47348 * 270.00371 * 9 8 7 39 39 H 1.09003 * 109.46954 * 30.00146 * 9 8 7 40 40 H 1.09007 * 109.47372 * 149.99881 * 9 8 7 41 41 H 0.97006 * 120.00159 * 354.68564 * 12 10 8 42 42 H 1.08001 * 119.96171 * 0.02562 * 14 13 12 43 43 H 1.07998 * 119.92710 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.95750 * 180.27523 * 16 15 14 45 45 H 0.96993 * 120.00379 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.07244 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6098 0.0011 7 6 5.6859 2.6098 0.0011 8 7 6.1742 3.9910 0.0022 9 6 6.4183 4.6827 -1.2659 10 6 6.3988 4.6254 1.1700 11 8 6.1966 4.0512 2.2224 12 7 6.8475 5.8963 1.1710 13 6 6.9751 6.5924 2.3783 14 6 6.0801 6.3567 3.4149 15 6 6.2050 7.0438 4.6070 16 6 7.2230 7.9629 4.7744 17 6 8.1173 8.2073 3.7400 18 8 9.1137 9.1146 3.9033 19 6 10.0219 9.2116 2.9115 20 1 9.9876 8.5247 2.0788 21 6 10.9998 10.1932 2.9605 22 7 11.0419 11.0297 3.9750 23 14 12.2577 10.3281 1.5860 24 1 11.9946 9.2780 0.5696 25 1 12.1560 11.6669 0.9517 26 1 13.6219 10.1470 2.1440 27 6 7.9945 7.5186 2.5414 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0090 0.6535 0.8907 34 1 3.7922 3.1233 0.8911 35 1 3.7928 3.1239 -0.8888 36 1 6.0492 2.0964 -0.8891 37 1 6.0492 2.0956 0.8909 38 1 7.4477 4.5117 -1.5808 39 1 5.7374 4.2992 -2.0259 40 1 6.2512 5.7519 -1.1348 41 1 7.0822 6.3285 0.3349 42 1 5.2861 5.6355 3.2885 43 1 5.5085 6.8586 5.4113 44 1 7.3207 8.4953 5.7090 45 1 11.7258 11.7167 4.0092 46 1 8.6913 7.7036 1.7373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269840307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:25 Heat of formation + Delta-G solvation = -86.884903 kcal Electronic energy + Delta-G solvation = -27910.847490 eV Core-core repulsion = 23800.626144 eV Total energy + Delta-G solvation = -4110.221346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83061 -40.72964 -40.47485 -38.43422 -36.97915 -35.83109 -35.59798 -34.32207 -34.03990 -31.01257 -30.26389 -29.25497 -27.71844 -27.31267 -26.42686 -23.86211 -23.49867 -22.62373 -21.33949 -21.05647 -19.84664 -19.54607 -18.78280 -18.23211 -17.39059 -17.04363 -16.88894 -16.79833 -16.59611 -16.33525 -15.97260 -15.66605 -15.52173 -15.42517 -14.91648 -14.69207 -14.56190 -14.39463 -14.04471 -13.88782 -13.55580 -13.44265 -13.25320 -13.16409 -12.99315 -12.77387 -12.74769 -12.64260 -12.56435 -12.38167 -12.07570 -11.67444 -11.51078 -11.27897 -11.11502 -10.98180 -10.72163 -10.13049 -9.77407 -9.31243 -8.83223 -8.45168 -6.13882 0.44884 0.70617 1.36679 1.44966 1.51540 1.55179 1.64913 2.02437 2.18902 2.34515 2.84953 2.86192 3.18632 3.49847 3.80199 3.97221 4.02423 4.11449 4.22875 4.33277 4.39438 4.43306 4.46397 4.54682 4.59271 4.63444 4.64062 4.69532 4.73737 4.80521 4.87496 4.93875 5.00347 5.08416 5.12634 5.27612 5.33965 5.46178 5.48715 5.60472 5.67723 5.69004 5.87570 6.03022 6.20164 6.57488 6.79180 6.99113 7.29688 7.41621 7.78731 8.78049 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.002065 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.128321 B =13553.797766 C =14539.496786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.501 3.499 4 O -0.595 6.595 5 C -0.128 4.128 6 C -0.113 4.113 7 C 0.133 3.867 8 N -0.625 5.625 9 C 0.067 3.933 10 C 0.697 3.303 11 O -0.608 6.608 12 N -0.676 5.676 13 C 0.205 3.795 14 C -0.201 4.201 15 C -0.051 4.051 16 C -0.214 4.214 17 C 0.137 3.863 18 O -0.226 6.226 19 C -0.412 4.412 20 H 0.102 0.898 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.019 2.981 24 H -0.249 1.249 25 H -0.268 1.268 26 H -0.271 1.271 27 C -0.260 4.260 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.421 0.579 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.030 0.970 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.417 0.583 42 H 0.124 0.876 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.272 0.728 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.200 -24.934 -16.391 33.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.378 5.378 3 C 0.289 3.711 4 O -0.476 6.476 5 C -0.168 4.168 6 C -0.153 4.153 7 C 0.011 3.989 8 N -0.361 5.361 9 C -0.075 4.075 10 C 0.399 3.601 11 O -0.487 6.487 12 N -0.325 5.325 13 C 0.110 3.890 14 C -0.222 4.222 15 C -0.069 4.069 16 C -0.234 4.234 17 C 0.085 3.915 18 O -0.132 6.132 19 C -0.488 4.488 20 H 0.119 0.881 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.839 3.161 24 H -0.172 1.172 25 H -0.193 1.193 26 H -0.196 1.196 27 C -0.282 4.282 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.130 0.870 31 H 0.258 0.742 32 H 0.154 0.846 33 H 0.131 0.869 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.256 0.744 42 H 0.142 0.858 43 H 0.170 0.830 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.650 -24.359 -15.485 32.369 hybrid contribution 0.709 0.530 -0.461 0.998 sum -13.942 -23.828 -15.947 31.882 Atomic orbital electron populations 1.21630 0.79509 1.04093 1.01008 1.45789 1.08148 1.08935 1.74920 1.21379 0.91751 0.83370 0.74552 1.90716 1.71842 1.33496 1.51531 1.21589 0.89455 0.98453 1.07279 1.21597 0.95557 0.96365 1.01759 1.21545 0.92638 0.80101 1.04663 1.47137 1.68883 1.15625 1.04485 1.22075 1.03399 0.97473 0.84561 1.16082 0.78246 0.80863 0.84868 1.90898 1.59566 1.66702 1.31529 1.42633 1.68651 1.12679 1.08570 1.17212 0.93106 0.92069 0.86620 1.20827 1.01765 1.04841 0.94721 1.20889 0.95957 0.92950 0.97149 1.20451 0.98944 1.05251 0.98790 1.19560 0.88768 0.89323 0.93800 1.83984 1.33371 1.51561 1.44276 1.21826 1.07234 1.17335 1.02380 0.88085 1.26599 1.00190 0.94178 1.01068 1.70192 1.35238 1.18443 1.31868 0.84520 0.76225 0.79164 0.76226 1.17217 1.19323 1.19596 1.20778 1.02211 1.05649 0.99536 0.94003 0.93383 0.87027 0.74179 0.84599 0.86878 0.95085 0.91630 0.86028 0.90912 0.90610 0.87928 0.91420 0.74389 0.85798 0.83011 0.86142 0.91851 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.70 127.77 1.37 2.15 16 2 N -0.73 -6.98 5.71 -484.51 -2.77 -9.74 16 3 C 0.50 8.55 7.83 87.66 0.69 9.23 16 4 O -0.60 -17.00 15.98 -3.03 -0.05 -17.05 16 5 C -0.13 -1.30 5.70 29.85 0.17 -1.13 16 6 C -0.11 -1.99 4.83 30.60 0.15 -1.84 16 7 C 0.13 2.06 5.41 86.38 0.47 2.53 16 8 N -0.63 -12.92 2.87 -864.91 -2.49 -15.41 16 9 C 0.07 0.83 10.16 127.77 1.30 2.13 16 10 C 0.70 21.65 8.01 179.05 1.43 23.08 16 11 O -0.61 -23.52 13.63 -3.97 -0.05 -23.58 16 12 N -0.68 -21.26 5.17 -317.24 -1.64 -22.90 16 13 C 0.21 8.18 6.27 38.13 0.24 8.42 16 14 C -0.20 -8.00 8.65 22.42 0.19 -7.80 16 15 C -0.05 -1.97 10.03 22.23 0.22 -1.75 16 16 C -0.21 -9.68 9.99 22.41 0.22 -9.45 16 17 C 0.14 7.02 6.64 22.56 0.15 7.17 16 18 O -0.23 -13.67 9.76 -22.66 -0.22 -13.89 16 19 C -0.41 -23.84 9.44 67.92 0.64 -23.20 16 20 H 0.10 5.35 5.30 -2.91 -0.02 5.33 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -56.31 13.67 21.61 0.30 -56.01 16 23 Si 1.02 42.29 29.55 68.60 2.03 44.32 16 24 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 C -0.26 -11.73 9.04 22.51 0.20 -11.53 16 28 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.42 0.70 8.83 -92.71 -0.82 -0.12 16 32 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.03 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.12 0.84 8.07 -2.39 -0.02 0.82 16 37 H 0.07 1.38 7.42 -2.39 -0.02 1.37 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 0.77 8.07 -2.39 -0.02 0.75 16 40 H 0.07 0.88 6.45 -2.38 -0.02 0.86 16 41 H 0.42 10.34 6.63 -92.70 -0.61 9.72 16 42 H 0.12 4.92 6.43 -2.91 -0.02 4.90 16 43 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 44 H 0.12 5.25 8.06 -2.91 -0.02 5.22 16 45 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.13 5.70 5.71 -2.91 -0.02 5.69 16 Total: -1.00 -89.68 388.26 2.61 -87.07 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.41 Total: 30.02 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 7.91 Total: -2.82 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -6.60 Total: -104.07 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -0.32 Total: -54.52 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -89.68 2.61 -87.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269840307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.182 kcal (2) G-P(sol) polarization free energy of solvation -89.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds