Wall clock time and date at job start Tue Mar 31 2020 18:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38844 * 119.98649 * 359.73021 * 3 2 1 5 5 C 1.38243 * 120.23915 * 179.72580 * 4 3 2 6 6 C 1.38015 * 120.20418 * 0.54151 * 5 4 3 7 7 C 1.39555 * 119.96346 * 359.73158 * 6 5 4 8 8 C 1.47860 * 120.11565 * 180.02562 * 7 6 5 9 9 O 1.21560 * 119.99819 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00213 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99857 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46919 * 179.97438 * 11 10 8 13 13 N 1.46492 * 109.47121 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00055 * 179.97438 * 13 12 11 15 15 O 1.21582 * 119.99929 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99968 * 180.02562 * 14 13 12 17 17 C 1.46509 * 119.99657 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46938 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47301 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99753 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00098 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00018 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47022 * 60.00041 * 23 21 19 25 25 H 1.48502 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47170 * 299.99875 * 23 21 19 27 27 C 1.38455 * 119.98141 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 29 29 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 31 31 H 1.08001 * 119.88067 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.90477 * 180.25715 * 5 4 3 33 33 H 1.07996 * 120.01824 * 179.74800 * 6 5 4 34 34 H 0.96994 * 119.99736 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.47428 * 299.99371 * 11 10 8 36 36 H 1.09001 * 109.46894 * 59.99948 * 11 10 8 37 37 H 1.08999 * 109.46892 * 300.00109 * 12 11 10 38 38 H 1.08998 * 109.47213 * 59.99697 * 12 11 10 39 39 H 0.97003 * 120.00490 * 0.02562 * 13 12 11 40 40 H 0.96994 * 120.00292 * 359.97438 * 16 14 13 41 41 H 1.08997 * 109.46993 * 299.99396 * 17 16 14 42 42 H 1.08991 * 109.47071 * 59.99802 * 17 16 14 43 43 H 1.09005 * 109.46964 * 300.00148 * 18 17 16 44 44 H 1.08999 * 109.47577 * 59.99387 * 18 17 16 45 45 H 0.97005 * 119.99861 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.10165 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3753 -0.0057 5 6 1.9115 3.6098 0.0000 6 6 3.2891 3.6932 0.0001 7 6 4.0579 2.5284 0.0001 8 6 5.5340 2.6138 0.0007 9 8 6.2015 1.5979 0.0012 10 7 6.1394 3.8180 0.0008 11 6 7.6020 3.9025 0.0020 12 6 8.0279 5.3720 0.0012 13 7 9.4904 5.4566 0.0031 14 6 10.0958 6.6607 0.0022 15 8 9.4281 7.6768 0.0004 16 7 11.4413 6.7385 0.0034 17 6 12.0993 8.0475 0.0030 18 6 13.6172 7.8552 0.0039 19 6 14.2941 9.2016 0.0042 20 1 13.7011 10.1042 0.0033 21 6 15.6706 9.2812 0.0055 22 7 16.3928 8.1821 0.0070 23 14 16.5096 10.9501 0.0051 24 1 16.1053 11.7077 1.2167 25 1 17.9829 10.7635 0.0060 26 1 16.1077 11.7059 -1.2084 27 6 3.4286 1.2832 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2111 2.3162 -0.0105 32 1 1.3177 4.5119 -0.0002 33 1 3.7719 4.6592 0.0004 34 1 5.6067 4.6285 0.0001 35 1 7.9936 3.4109 0.8926 36 1 7.9951 3.4101 -0.8875 37 1 7.6363 5.8633 -0.8895 38 1 7.6347 5.8648 0.8904 39 1 10.0231 4.6460 0.0041 40 1 11.9740 5.9279 0.0052 41 1 11.8043 8.6022 -0.8877 42 1 11.8026 8.6035 0.8923 43 1 13.9126 7.3002 0.8944 44 1 13.9136 7.2992 -0.8856 45 1 17.3612 8.2381 0.0083 46 1 4.0182 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273200776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:42 Heat of formation + Delta-G solvation = -83.750239 kcal Electronic energy + Delta-G solvation = -26347.927223 eV Core-core repulsion = 22237.841806 eV Total energy + Delta-G solvation = -4110.085417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95674 -39.93902 -39.53403 -37.62183 -36.24063 -34.84322 -34.05357 -32.81755 -31.84968 -31.07202 -29.87612 -28.43606 -27.87769 -24.97350 -24.14504 -23.03747 -22.63386 -21.24780 -20.86883 -20.49993 -19.17294 -18.12815 -17.12428 -16.73212 -16.59275 -16.39271 -16.34820 -16.18140 -16.01321 -15.52582 -15.24601 -14.54728 -14.41483 -14.33788 -14.18604 -14.07933 -13.93520 -13.49264 -13.27862 -13.03278 -12.80038 -12.46162 -12.26853 -12.06178 -12.03254 -11.67545 -11.53402 -11.19341 -11.01029 -10.64575 -10.44794 -10.31219 -10.00935 -9.68114 -9.56464 -9.46609 -9.27653 -9.12538 -8.83296 -8.48549 -8.27291 -6.08302 -4.11157 0.28193 0.84424 2.33699 2.40170 2.74764 3.24466 3.32168 3.34045 3.36070 3.39861 3.53478 4.12074 4.18100 4.37384 4.40246 4.43754 4.52760 4.57833 4.58159 4.69211 4.78816 4.82586 4.92407 4.94416 5.14489 5.28835 5.36387 5.58401 5.60260 5.65462 5.75234 5.78203 5.89550 6.04085 6.27802 6.39204 6.47091 6.77068 6.78803 6.96957 7.00340 7.17228 7.56555 7.63731 7.74768 7.90516 8.25347 8.39162 8.90996 8.96440 9.53631 11.03323 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.049332 B = 0.001289 C = 0.001258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.448746 B =21721.118450 C =22252.213894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.120 3.880 4 C -0.184 4.184 5 C -0.085 4.085 6 C -0.123 4.123 7 C -0.094 4.094 8 C 0.561 3.439 9 O -0.529 6.529 10 N -0.720 5.720 11 C 0.108 3.892 12 C 0.131 3.869 13 N -0.751 5.751 14 C 0.701 3.299 15 O -0.598 6.598 16 N -0.737 5.737 17 C 0.140 3.860 18 C 0.013 3.987 19 C -0.522 4.522 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.092 4.092 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.397 0.603 40 H 0.394 0.606 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.779 -15.920 -0.010 37.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.075 3.925 4 C -0.203 4.203 5 C -0.103 4.103 6 C -0.142 4.142 7 C -0.097 4.097 8 C 0.348 3.652 9 O -0.406 6.406 10 N -0.373 5.373 11 C -0.016 4.016 12 C 0.005 3.995 13 N -0.409 5.409 14 C 0.400 3.600 15 O -0.476 6.476 16 N -0.390 5.390 17 C 0.017 3.983 18 C -0.025 4.025 19 C -0.561 4.561 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.111 4.111 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.240 0.760 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.227 0.773 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -33.599 -15.919 -0.012 37.179 hybrid contribution 0.490 0.655 0.000 0.818 sum -33.108 -15.264 -0.012 36.457 Atomic orbital electron populations 1.23110 0.78019 1.04327 1.01442 1.86117 1.21625 1.26430 1.88622 1.18875 0.92019 0.84549 0.97082 1.21473 1.00471 0.92339 1.06051 1.20911 0.94302 0.97347 0.97779 1.21248 0.94149 0.97503 1.01324 1.19625 0.92633 0.93595 1.03893 1.18140 0.87288 0.83319 0.76431 1.90814 1.65966 1.34815 1.49021 1.45649 1.07460 1.08513 1.75700 1.21496 0.79850 0.96592 1.03655 1.21124 0.80779 0.94547 1.03044 1.44859 1.06302 1.07620 1.82159 1.15988 0.82735 0.83225 0.78028 1.90891 1.64274 1.34089 1.58373 1.45532 1.03894 1.11307 1.78271 1.21611 0.94942 0.81049 1.00687 1.19324 0.87156 0.98136 0.97846 1.21013 0.91416 0.92198 1.51474 0.92267 1.24984 0.97471 0.96784 0.94968 1.69946 1.05861 1.27214 1.50309 0.86572 0.78171 0.84003 0.78781 1.20104 1.21252 1.20110 1.20476 0.91386 0.98315 1.00961 0.92470 0.87951 0.92461 0.84926 0.84839 0.85167 0.76020 0.90331 0.90337 0.91065 0.91070 0.76883 0.77258 0.92729 0.92726 0.95947 0.95944 0.92797 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.35 10.49 -19.47 -0.20 -2.56 16 3 C 0.12 0.93 6.68 -39.28 -0.26 0.67 16 4 C -0.18 -1.04 9.03 -39.36 -0.36 -1.40 16 5 C -0.09 -0.43 10.03 -39.66 -0.40 -0.83 16 6 C -0.12 -0.73 9.54 -39.17 -0.37 -1.10 16 7 C -0.09 -0.79 5.87 -104.99 -0.62 -1.41 16 8 C 0.56 5.60 7.77 -12.32 -0.10 5.51 16 9 O -0.53 -7.21 16.35 5.31 0.09 -7.12 16 10 N -0.72 -5.44 5.51 -61.24 -0.34 -5.78 16 11 C 0.11 0.88 5.79 -4.04 -0.02 0.86 16 12 C 0.13 1.25 5.79 -4.04 -0.02 1.23 16 13 N -0.75 -8.84 5.56 -65.23 -0.36 -9.20 16 14 C 0.70 11.85 8.57 -86.92 -0.74 11.11 16 15 O -0.60 -12.45 16.34 5.29 0.09 -12.36 16 16 N -0.74 -12.77 5.56 -65.22 -0.36 -13.13 16 17 C 0.14 2.98 5.61 -4.04 -0.02 2.96 16 18 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 19 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 23 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C -0.09 -0.83 9.53 -39.02 -0.37 -1.20 16 28 H 0.06 0.13 7.64 -51.93 -0.40 -0.27 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.13 7.67 -51.93 -0.40 -0.27 16 31 H 0.13 0.43 6.28 -52.49 -0.33 0.10 16 32 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 33 H 0.13 0.45 6.40 -52.49 -0.34 0.12 16 34 H 0.40 2.04 6.50 -40.82 -0.27 1.78 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.40 3.62 8.49 -40.82 -0.35 3.28 16 40 H 0.39 5.84 8.49 -40.82 -0.35 5.50 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.15 1.42 7.65 -52.49 -0.40 1.02 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -36.42 394.13 -8.88 -45.30 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.59 Total: 3.53 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.85 Total: 4.42 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.33 Total: -53.48 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.03 Total: -22.04 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.42 -8.88 -45.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273200776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.449 kcal (2) G-P(sol) polarization free energy of solvation -36.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds