Wall clock time and date at job start Tue Mar 31 2020 18:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38844 * 119.98649 * 359.73021 * 3 2 1 5 5 C 1.38243 * 120.23915 * 179.72580 * 4 3 2 6 6 C 1.38015 * 120.20418 * 0.54151 * 5 4 3 7 7 C 1.39555 * 119.96346 * 359.73158 * 6 5 4 8 8 C 1.47860 * 120.11565 * 180.02562 * 7 6 5 9 9 O 1.21560 * 119.99819 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00213 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99857 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46919 * 179.97438 * 11 10 8 13 13 N 1.46492 * 109.47121 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00055 * 179.97438 * 13 12 11 15 15 O 1.21582 * 119.99929 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99968 * 180.02562 * 14 13 12 17 17 C 1.46509 * 119.99657 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46938 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47301 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99753 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00098 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00018 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47022 * 60.00041 * 23 21 19 25 25 H 1.48502 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47170 * 299.99875 * 23 21 19 27 27 C 1.38455 * 119.98141 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 29 29 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 31 31 H 1.08001 * 119.88067 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.90477 * 180.25715 * 5 4 3 33 33 H 1.07996 * 120.01824 * 179.74800 * 6 5 4 34 34 H 0.96994 * 119.99736 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.47428 * 299.99371 * 11 10 8 36 36 H 1.09001 * 109.46894 * 59.99948 * 11 10 8 37 37 H 1.08999 * 109.46892 * 300.00109 * 12 11 10 38 38 H 1.08998 * 109.47213 * 59.99697 * 12 11 10 39 39 H 0.97003 * 120.00490 * 0.02562 * 13 12 11 40 40 H 0.96994 * 120.00292 * 359.97438 * 16 14 13 41 41 H 1.08997 * 109.46993 * 299.99396 * 17 16 14 42 42 H 1.08991 * 109.47071 * 59.99802 * 17 16 14 43 43 H 1.09005 * 109.46964 * 300.00148 * 18 17 16 44 44 H 1.08999 * 109.47577 * 59.99387 * 18 17 16 45 45 H 0.97005 * 119.99861 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.10165 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3753 -0.0057 5 6 1.9115 3.6098 0.0000 6 6 3.2891 3.6932 0.0001 7 6 4.0579 2.5284 0.0001 8 6 5.5340 2.6138 0.0007 9 8 6.2015 1.5979 0.0012 10 7 6.1394 3.8180 0.0008 11 6 7.6020 3.9025 0.0020 12 6 8.0279 5.3720 0.0012 13 7 9.4904 5.4566 0.0031 14 6 10.0958 6.6607 0.0022 15 8 9.4281 7.6768 0.0004 16 7 11.4413 6.7385 0.0034 17 6 12.0993 8.0475 0.0030 18 6 13.6172 7.8552 0.0039 19 6 14.2941 9.2016 0.0042 20 1 13.7011 10.1042 0.0033 21 6 15.6706 9.2812 0.0055 22 7 16.3928 8.1821 0.0070 23 14 16.5096 10.9501 0.0051 24 1 16.1053 11.7077 1.2167 25 1 17.9829 10.7635 0.0060 26 1 16.1077 11.7059 -1.2084 27 6 3.4286 1.2832 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2111 2.3162 -0.0105 32 1 1.3177 4.5119 -0.0002 33 1 3.7719 4.6592 0.0004 34 1 5.6067 4.6285 0.0001 35 1 7.9936 3.4109 0.8926 36 1 7.9951 3.4101 -0.8875 37 1 7.6363 5.8633 -0.8895 38 1 7.6347 5.8648 0.8904 39 1 10.0231 4.6460 0.0041 40 1 11.9740 5.9279 0.0052 41 1 11.8043 8.6022 -0.8877 42 1 11.8026 8.6035 0.8923 43 1 13.9126 7.3002 0.8944 44 1 13.9136 7.2992 -0.8856 45 1 17.3612 8.2381 0.0083 46 1 4.0182 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273200776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:42 Heat of formation + Delta-G solvation = -111.819997 kcal Electronic energy + Delta-G solvation = -26349.144419 eV Core-core repulsion = 22237.841806 eV Total energy + Delta-G solvation = -4111.302613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54666 -40.99795 -40.43885 -38.13668 -37.26139 -36.42759 -35.12204 -34.74206 -32.42406 -31.83194 -31.28753 -29.49746 -28.18479 -26.67078 -25.05287 -23.62812 -23.34536 -22.85801 -22.08274 -21.45767 -19.81882 -19.36740 -18.41208 -17.76109 -17.27126 -17.19822 -17.13479 -16.96359 -16.71281 -16.50993 -16.40315 -16.39983 -15.46585 -15.25942 -15.21794 -14.81782 -14.74863 -14.70485 -14.46907 -14.23521 -13.58702 -13.20157 -13.19431 -13.02671 -12.93845 -12.83895 -12.71065 -12.51694 -12.19302 -12.05318 -11.97898 -11.67705 -11.50576 -11.29444 -11.15970 -10.58282 -10.40898 -10.32020 -10.03249 -9.72470 -9.31402 -8.21963 -6.32302 -0.27228 0.36044 1.42923 1.46029 1.48122 1.54542 1.74148 2.10360 2.16706 2.41497 2.47747 2.78843 3.13169 3.41278 3.57292 3.66532 3.77889 4.03645 4.04063 4.11936 4.22562 4.38737 4.40534 4.43392 4.48547 4.50694 4.55413 4.74026 4.83648 4.84364 4.87425 4.89929 5.15957 5.18509 5.26380 5.33222 5.33669 5.44899 5.53452 5.60935 5.62187 5.80783 6.02664 6.19249 6.35590 6.38640 6.81101 7.04582 7.11538 7.37188 7.58938 8.89741 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.049332 B = 0.001289 C = 0.001258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.448746 B =21721.118450 C =22252.213894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.108 3.892 4 C -0.178 4.178 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.110 4.110 8 C 0.560 3.440 9 O -0.576 6.576 10 N -0.706 5.706 11 C 0.118 3.882 12 C 0.135 3.865 13 N -0.733 5.733 14 C 0.701 3.299 15 O -0.636 6.636 16 N -0.733 5.733 17 C 0.160 3.840 18 C 0.023 3.977 19 C -0.548 4.548 20 H 0.060 0.940 21 C 0.008 3.992 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.268 1.268 27 C -0.120 4.120 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.418 0.582 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.413 0.587 40 H 0.407 0.593 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.265 0.735 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.778 -14.554 -0.012 38.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.062 3.938 4 C -0.197 4.197 5 C -0.099 4.099 6 C -0.137 4.137 7 C -0.113 4.113 8 C 0.348 3.652 9 O -0.456 6.456 10 N -0.359 5.359 11 C -0.006 4.006 12 C 0.010 3.990 13 N -0.390 5.390 14 C 0.400 3.600 15 O -0.518 6.518 16 N -0.388 5.388 17 C 0.036 3.964 18 C -0.015 4.015 19 C -0.586 4.586 20 H 0.078 0.922 21 C -0.190 4.190 22 N -0.567 5.567 23 Si 0.788 3.212 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.178 0.822 32 H 0.185 0.815 33 H 0.174 0.826 34 H 0.257 0.743 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.243 0.757 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.074 0.926 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -35.632 -14.583 -0.014 38.501 hybrid contribution 0.996 0.169 0.001 1.010 sum -34.636 -14.414 -0.013 37.515 Atomic orbital electron populations 1.23397 0.75976 1.05709 1.02664 1.86084 1.23859 1.26785 1.88730 1.18990 0.91688 0.85533 0.97543 1.21827 1.01780 0.91695 1.04364 1.21350 0.94141 0.98333 0.96093 1.21563 0.94695 0.97499 0.99967 1.19559 0.91741 0.94378 1.05625 1.18458 0.88023 0.83132 0.75595 1.90784 1.67013 1.36398 1.51426 1.45508 1.07315 1.08525 1.74589 1.21340 0.80205 0.95444 1.03642 1.21189 0.79129 0.95351 1.03301 1.44679 1.07432 1.06564 1.80355 1.16052 0.82172 0.84033 0.77716 1.90866 1.64933 1.35884 1.60127 1.45219 1.04477 1.10445 1.78640 1.21077 0.92885 0.82694 0.99730 1.19131 0.89294 0.96694 0.96333 1.21456 0.92174 0.93412 1.51568 0.92175 1.25851 0.98176 1.00615 0.94396 1.70054 1.06218 1.29377 1.51030 0.85515 0.77097 0.79386 0.79158 1.19299 1.20692 1.19311 1.20450 0.92354 0.97995 1.03149 0.91164 0.86708 0.91164 0.82242 0.81502 0.82579 0.74339 0.90413 0.90423 0.90810 0.90814 0.75086 0.75732 0.93686 0.93681 0.97347 0.97343 0.92592 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.34 -5.15 10.49 -92.59 -0.97 -6.12 16 3 C 0.11 1.65 6.68 22.47 0.15 1.80 16 4 C -0.18 -1.61 9.03 22.42 0.20 -1.40 16 5 C -0.08 -0.57 10.03 22.22 0.22 -0.35 16 6 C -0.12 -1.14 9.54 22.53 0.21 -0.93 16 7 C -0.11 -1.84 5.87 -20.10 -0.12 -1.96 16 8 C 0.56 11.31 7.77 86.79 0.67 11.98 16 9 O -0.58 -16.53 16.35 -3.90 -0.06 -16.59 16 10 N -0.71 -9.87 5.51 -465.94 -2.57 -12.43 16 11 C 0.12 1.78 5.79 86.38 0.50 2.28 16 12 C 0.14 2.35 5.79 86.38 0.50 2.85 16 13 N -0.73 -16.07 5.56 -478.55 -2.66 -18.73 16 14 C 0.70 22.98 8.57 179.05 1.53 24.51 16 15 O -0.64 -26.03 16.34 -3.97 -0.06 -26.10 16 16 N -0.73 -25.00 5.56 -478.53 -2.66 -27.66 16 17 C 0.16 6.86 5.61 86.38 0.48 7.35 16 18 C 0.02 1.15 5.09 29.85 0.15 1.31 16 19 C -0.55 -30.48 9.11 25.60 0.23 -30.25 16 20 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 21 C 0.01 0.47 5.46 84.65 0.46 0.93 16 22 N -0.93 -54.33 13.29 21.45 0.28 -54.05 16 23 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 C -0.12 -2.32 9.53 22.63 0.22 -2.11 16 28 H 0.07 0.17 7.64 -2.39 -0.02 0.16 16 29 H 0.11 0.26 8.14 -2.38 -0.02 0.25 16 30 H 0.07 0.18 7.67 -2.39 -0.02 0.16 16 31 H 0.16 0.50 6.28 -2.91 -0.02 0.48 16 32 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 33 H 0.16 0.57 6.40 -2.91 -0.02 0.55 16 34 H 0.42 3.33 6.50 -92.71 -0.60 2.73 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.41 6.78 8.49 -92.71 -0.79 5.99 16 40 H 0.41 11.75 8.49 -92.71 -0.79 10.96 16 41 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.27 14.67 8.31 -92.70 -0.77 13.89 16 46 H 0.12 2.79 7.65 -2.91 -0.02 2.76 16 Total: -1.00 -80.29 394.13 -1.28 -81.57 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -1.14 Total: 17.45 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 6.54 Total: 17.22 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -7.60 Total: -112.87 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -1.10 Total: -48.81 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -80.29 -1.28 -81.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273200776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.247 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds