Wall clock time and date at job start Tue Mar 31 2020 18:43:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.35991 * 117.00149 * 2 1
4 4 C 1.38115 * 120.00640 * 359.97438 * 3 2 1
5 5 C 1.39760 * 119.86132 * 180.02562 * 4 3 2
6 6 C 1.47590 * 120.05362 * 179.97438 * 5 4 3
7 7 O 1.21588 * 120.00099 * 329.26237 * 6 5 4
8 8 N 1.34770 * 119.99872 * 149.26350 * 6 5 4
9 9 C 1.46503 * 120.00114 * 174.51814 * 8 6 5
10 10 C 1.46502 * 120.00192 * 354.51531 * 8 6 5
11 11 C 1.39724 * 119.88599 * 359.97438 * 5 4 3
12 12 C 1.37744 * 120.02099 * 359.74226 * 11 5 4
13 13 C 1.38979 * 120.13389 * 0.51508 * 12 11 5
14 14 N 1.39628 * 119.94223 * 179.76248 * 13 12 11
15 15 C 1.34779 * 120.00202 * 335.76755 * 14 13 12
16 16 O 1.21583 * 119.99374 * 354.53102 * 15 14 13
17 17 N 1.34771 * 120.00164 * 174.25123 * 15 14 13
18 18 C 1.46507 * 119.99944 * 180.27981 * 17 15 14
19 19 C 1.52999 * 109.46796 * 180.02562 * 18 17 15
20 20 C 1.50701 * 109.46654 * 180.02562 * 19 18 17
21 21 H 1.08002 * 120.00421 * 359.97438 * 20 19 18
22 22 C 1.37874 * 119.99976 * 180.02562 * 20 19 18
23 23 N 1.31518 * 120.00038 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00330 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.47269 * 59.99582 * 24 22 20
26 26 H 1.48499 * 109.47601 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.47075 * 299.99798 * 24 22 20
28 28 H 1.09001 * 109.47020 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47275 * 299.99490 * 1 2 3
30 30 H 1.09006 * 109.47656 * 59.99771 * 1 2 3
31 31 H 1.08000 * 120.06985 * 359.97438 * 4 3 2
32 32 H 1.09006 * 109.47003 * 89.99866 * 9 8 6
33 33 H 1.08994 * 109.47380 * 209.99963 * 9 8 6
34 34 H 1.08997 * 109.46877 * 330.00467 * 9 8 6
35 35 H 1.08996 * 109.47020 * 92.92335 * 10 8 6
36 36 H 1.09001 * 109.47204 * 212.92068 * 10 8 6
37 37 H 1.09000 * 109.47144 * 332.92251 * 10 8 6
38 38 H 1.08007 * 119.98575 * 180.02562 * 11 5 4
39 39 H 1.07991 * 119.93206 * 180.24956 * 12 11 5
40 40 H 0.96997 * 120.00323 * 155.77203 * 14 13 12
41 41 H 0.97002 * 120.00017 * 0.27607 * 17 15 14
42 42 H 1.09001 * 109.47008 * 299.99955 * 18 17 15
43 43 H 1.09002 * 109.46996 * 59.99915 * 18 17 15
44 44 H 1.09001 * 109.47245 * 299.99735 * 19 18 17
45 45 H 1.08993 * 109.47301 * 60.00311 * 19 18 17
46 46 H 0.97006 * 120.00395 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0463 1.2117 0.0000
4 6 1.2943 2.3701 -0.0005
5 6 1.9320 3.6137 -0.0011
6 6 1.1325 4.8543 -0.0022
7 8 0.0426 4.8747 -0.5409
8 7 1.6105 5.9646 0.5938
9 6 0.8738 7.2267 0.4900
10 6 2.8667 5.9094 1.3455
11 6 3.3276 3.6805 -0.0005
12 6 4.0730 2.5222 0.0059
13 6 3.4398 1.2850 0.0011
14 7 4.1993 0.1134 0.0026
15 6 5.4612 0.1276 -0.4708
16 8 5.9043 1.1338 -0.9898
17 7 6.2335 -0.9716 -0.3636
18 6 7.6072 -0.9541 -0.8727
19 6 8.2588 -2.3167 -0.6287
20 6 9.6720 -2.2985 -1.1518
21 1 10.0659 -1.4047 -1.6125
22 6 10.4619 -3.4234 -1.0430
23 7 9.9822 -4.5121 -0.4824
24 14 12.2133 -3.4011 -1.6920
25 1 12.9889 -2.3486 -0.9877
26 1 12.8460 -4.7236 -1.4551
27 1 12.1978 -3.1131 -3.1487
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5137 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 0.2157 2.3150 -0.0014
32 1 0.1697 7.3056 1.3184
33 1 1.5746 8.0606 0.5281
34 1 0.3289 7.2527 -0.4536
35 1 3.6944 6.1804 0.6902
36 1 2.8211 6.6079 2.1811
37 1 3.0192 4.8989 1.7246
38 1 3.8221 4.6407 -0.0005
39 1 5.1516 2.5755 0.0104
40 1 3.8188 -0.7108 0.3443
41 1 5.8799 -1.7743 0.0505
42 1 7.5957 -0.7435 -1.9421
43 1 8.1762 -0.1811 -0.3562
44 1 8.2703 -2.5278 0.4406
45 1 7.6897 -3.0894 -1.1455
46 1 10.5380 -5.3034 -0.4056
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273269329.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:43:26
Heat of formation + Delta-G solvation = -81.762583 kcal
Electronic energy + Delta-G solvation = -28143.458051 eV
Core-core repulsion = 24033.458825 eV
Total energy + Delta-G solvation = -4109.999226 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.16378 -41.16008 -40.32728 -38.27057 -36.80414 -36.61237 -35.83337 -34.83105
-32.04738 -31.42892 -30.74053 -29.06297 -28.07522 -27.33721 -26.57138 -24.37296
-23.49450 -22.83887 -21.99044 -21.07327 -19.69779 -19.09316 -18.73404 -18.41097
-17.54150 -17.24914 -16.93178 -16.72912 -16.61935 -16.50377 -16.45544 -16.18357
-15.39873 -15.19054 -15.00615 -14.94545 -14.48783 -14.33676 -14.24812 -13.87718
-13.76208 -13.46077 -13.34392 -13.20729 -12.94206 -12.89057 -12.53962 -12.49054
-12.45094 -12.24832 -12.04173 -11.69852 -11.60198 -11.44327 -11.20583 -10.96935
-10.57993 -10.09685 -9.79942 -9.64882 -8.84340 -8.21936 -6.31960 -0.27593
0.29989 1.42928 1.46089 1.48718 1.54620 1.58817 1.94688 2.05835
2.21941 2.42677 2.72616 3.13157 3.15957 3.42279 3.70604 3.96894
4.04219 4.25675 4.30318 4.34017 4.37768 4.42553 4.48116 4.49492
4.54352 4.70217 4.73530 4.75442 4.86350 4.89005 4.91372 4.93251
5.01838 5.19235 5.24800 5.35265 5.46615 5.50267 5.61510 5.68584
5.79341 5.91005 6.18170 6.22102 6.26983 6.81110 6.92302 7.00526
7.37026 7.40305 8.89566
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.019224 B = 0.002061 C = 0.001891
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1456.166601 B =13583.090731 C =14803.993640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 O -0.327 6.327
3 C 0.084 3.916
4 C -0.131 4.131
5 C -0.135 4.135
6 C 0.558 3.442
7 O -0.580 6.580
8 N -0.613 5.613
9 C 0.082 3.918
10 C 0.061 3.939
11 C -0.090 4.090
12 C -0.121 4.121
13 C 0.162 3.838
14 N -0.665 5.665
15 C 0.700 3.300
16 O -0.607 6.607
17 N -0.724 5.724
18 C 0.160 3.840
19 C 0.022 3.978
20 C -0.545 4.545
21 H 0.061 0.939
22 C 0.006 3.994
23 N -0.926 5.926
24 Si 0.964 3.036
25 H -0.267 1.267
26 H -0.283 1.283
27 H -0.269 1.269
28 H 0.124 0.876
29 H 0.066 0.934
30 H 0.057 0.943
31 H 0.147 0.853
32 H 0.063 0.937
33 H 0.102 0.898
34 H 0.059 0.941
35 H 0.079 0.921
36 H 0.097 0.903
37 H 0.081 0.919
38 H 0.165 0.835
39 H 0.150 0.850
40 H 0.423 0.577
41 H 0.409 0.591
42 H 0.047 0.953
43 H 0.053 0.947
44 H 0.010 0.990
45 H 0.008 0.992
46 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.372 18.259 6.998 28.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.241 6.241
3 C 0.037 3.963
4 C -0.151 4.151
5 C -0.139 4.139
6 C 0.347 3.653
7 O -0.461 6.461
8 N -0.345 5.345
9 C -0.060 4.060
10 C -0.081 4.081
11 C -0.109 4.109
12 C -0.142 4.142
13 C 0.064 3.936
14 N -0.311 5.311
15 C 0.401 3.599
16 O -0.487 6.487
17 N -0.378 5.378
18 C 0.036 3.964
19 C -0.016 4.016
20 C -0.583 4.583
21 H 0.079 0.921
22 C -0.193 4.193
23 N -0.566 5.566
24 Si 0.789 3.211
25 H -0.192 1.192
26 H -0.208 1.208
27 H -0.194 1.194
28 H 0.142 0.858
29 H 0.085 0.915
30 H 0.076 0.924
31 H 0.165 0.835
32 H 0.081 0.919
33 H 0.121 0.879
34 H 0.078 0.922
35 H 0.097 0.903
36 H 0.115 0.885
37 H 0.099 0.901
38 H 0.182 0.818
39 H 0.167 0.833
40 H 0.261 0.739
41 H 0.245 0.755
42 H 0.066 0.934
43 H 0.071 0.929
44 H 0.029 0.971
45 H 0.026 0.974
46 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -20.314 18.752 6.327 28.361
hybrid contribution 0.289 -1.104 -0.056 1.142
sum -20.025 17.648 6.271 27.419
Atomic orbital electron populations
1.23349 0.76121 1.05797 1.02115 1.86011 1.23534 1.25318 1.89241
1.18392 0.89705 0.85649 1.02589 1.21090 1.00642 0.90117 1.03266
1.19594 0.93953 0.92667 1.07724 1.18426 0.84895 0.83980 0.77949
1.90743 1.22677 1.85161 1.47563 1.47755 1.25492 1.09406 1.51811
1.21816 0.97453 0.84318 1.02382 1.22497 0.84112 1.04662 0.96784
1.21710 0.91615 0.99693 0.97911 1.21351 1.02021 0.89831 1.00991
1.17309 0.87048 0.87030 1.02189 1.42277 1.12189 1.12127 1.64533
1.16025 0.80838 0.84028 0.79014 1.90832 1.74002 1.33182 1.50726
1.45275 1.14348 1.14276 1.63897 1.21173 0.78743 0.99027 0.97472
1.19144 0.94757 0.91196 0.96468 1.21433 0.98561 0.98797 1.39543
0.92061 1.25867 1.03020 0.95046 0.95339 1.70054 1.38533 1.03184
1.44827 0.85510 0.79122 0.77395 0.79087 1.19234 1.20823 1.19425
0.85796 0.91531 0.92384 0.83545 0.91881 0.87945 0.92232 0.90319
0.88471 0.90090 0.81813 0.83257 0.73883 0.75542 0.93417 0.92892
0.97138 0.97377 0.92620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.81 113.37 1.11 1.38 16
2 O -0.33 -6.68 9.88 -93.44 -0.92 -7.60 16
3 C 0.08 1.96 6.70 22.55 0.15 2.11 16
4 C -0.13 -2.93 8.58 22.61 0.19 -2.73 16
5 C -0.14 -3.01 5.31 -20.08 -0.11 -3.12 16
6 C 0.56 12.86 7.40 86.71 0.64 13.50 16
7 O -0.58 -17.37 16.36 -3.99 -0.07 -17.44 16
8 N -0.61 -9.63 3.27 -875.65 -2.87 -12.50 16
9 C 0.08 0.96 10.41 127.77 1.33 2.29 16
10 C 0.06 0.55 8.77 127.77 1.12 1.67 16
11 C -0.09 -1.85 7.56 22.51 0.17 -1.68 16
12 C -0.12 -3.10 8.70 22.33 0.19 -2.90 16
13 C 0.16 4.23 6.45 38.39 0.25 4.48 16
14 N -0.66 -17.44 5.28 -316.83 -1.67 -19.11 16
15 C 0.70 23.16 8.37 179.06 1.50 24.65 16
16 O -0.61 -23.78 13.45 -3.98 -0.05 -23.83 16
17 N -0.72 -24.13 5.56 -478.53 -2.66 -26.79 16
18 C 0.16 6.57 5.61 86.38 0.48 7.05 16
19 C 0.02 1.07 5.09 29.85 0.15 1.22 16
20 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16
21 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16
22 C 0.01 0.33 5.46 84.65 0.46 0.80 16
23 N -0.93 -53.61 13.29 21.45 0.28 -53.32 16
24 Si 0.96 42.96 29.54 68.60 2.03 44.98 16
25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16
26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16
27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
28 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16
29 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16
30 H 0.06 0.77 7.66 -2.38 -0.02 0.75 16
31 H 0.15 3.00 6.16 -2.91 -0.02 2.98 16
32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16
33 H 0.10 0.57 8.07 -2.39 -0.02 0.55 16
34 H 0.06 0.93 7.50 -2.39 -0.02 0.91 16
35 H 0.08 0.52 6.88 -2.39 -0.02 0.51 16
36 H 0.10 0.42 8.09 -2.39 -0.02 0.41 16
37 H 0.08 0.86 5.69 -2.39 -0.01 0.85 16
38 H 0.16 2.45 4.97 -2.91 -0.01 2.44 16
39 H 0.15 4.36 5.71 -2.91 -0.02 4.34 16
40 H 0.42 8.96 8.32 -92.71 -0.77 8.19 16
41 H 0.41 11.58 8.49 -92.71 -0.79 10.79 16
42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
43 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16
44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16
46 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16
Total: -1.00 -73.95 381.39 1.43 -72.51
By element:
Atomic # 1 Polarization: 24.36 SS G_CDS: -0.52 Total: 23.84 kcal
Atomic # 6 Polarization: 11.36 SS G_CDS: 7.89 Total: 19.25 kcal
Atomic # 7 Polarization: -104.80 SS G_CDS: -6.92 Total: -111.71 kcal
Atomic # 8 Polarization: -47.82 SS G_CDS: -1.04 Total: -48.87 kcal
Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal
Total: -73.95 1.43 -72.51 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273269329.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.249 kcal
(2) G-P(sol) polarization free energy of solvation -73.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds