Wall clock time and date at job start Tue Mar 31 2020 18:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 C 1.50700 * 109.47072 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00065 * 180.02562 * 9 8 7 12 12 N 1.40094 * 120.00547 * 180.02562 * 11 9 8 13 13 C 1.34774 * 120.00547 * 179.97438 * 12 11 9 14 14 O 1.21587 * 119.99926 * 180.02562 * 13 12 11 15 15 N 1.34776 * 119.99937 * 359.97438 * 13 12 11 16 16 C 1.46504 * 120.00132 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47030 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46959 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99538 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00527 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99490 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47156 * 90.00346 * 22 20 18 24 24 H 1.48498 * 109.47280 * 209.99842 * 22 20 18 25 25 H 1.48494 * 109.47444 * 330.00229 * 22 20 18 26 26 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 27 27 C 1.38149 * 120.05738 * 0.02562 * 26 6 5 28 28 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 29 29 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 31 31 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 34 34 H 1.08997 * 109.47106 * 329.99123 * 7 6 5 35 35 H 1.09001 * 109.47089 * 300.00245 * 8 7 6 36 36 H 1.09005 * 109.46795 * 59.99925 * 8 7 6 37 37 H 0.97006 * 119.99992 * 0.02562 * 11 9 8 38 38 H 0.97006 * 119.99461 * 359.97438 * 12 11 9 39 39 H 0.97000 * 119.99793 * 0.02562 * 15 13 12 40 40 H 1.08999 * 109.46947 * 300.00683 * 16 15 13 41 41 H 1.08997 * 109.46788 * 60.00692 * 16 15 13 42 42 H 1.09010 * 109.46891 * 300.00105 * 17 16 15 43 43 H 1.09001 * 109.47665 * 59.99780 * 17 16 15 44 44 H 0.96993 * 119.99803 * 180.02562 * 21 20 18 45 45 H 1.08005 * 119.97210 * 179.97438 * 26 6 5 46 46 H 1.07998 * 120.03203 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 6 4.2225 5.4783 -1.4311 9 6 4.9072 6.8208 -1.4237 10 8 5.1795 7.3569 -0.3704 11 7 5.2169 7.4258 -2.5875 12 7 5.8538 8.6735 -2.5807 13 6 6.1640 9.2782 -3.7446 14 8 6.7172 10.3609 -3.7386 15 7 5.8618 8.6823 -4.9151 16 6 6.1994 9.3394 -6.1802 17 6 5.7510 8.4584 -7.3480 18 6 6.0989 9.1340 -8.6494 19 1 6.5902 10.0957 -8.6441 20 6 5.7898 8.5242 -9.8467 21 7 5.1910 7.3533 -9.8532 22 14 6.2204 9.3620 -11.4598 23 1 7.5815 8.9474 -11.8851 24 1 5.2359 8.9692 -12.4999 25 1 6.1862 10.8352 -11.2771 26 6 1.9209 3.6048 0.0021 27 6 1.2913 2.3751 0.0016 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 4.0208 0.3800 -0.0014 32 1 5.1344 2.5751 0.0000 33 1 3.3560 5.7444 0.5232 34 1 4.9419 4.9365 0.5259 35 1 4.8524 4.7525 -1.9454 36 1 3.2663 5.5605 -1.9480 37 1 4.9987 6.9972 -3.4300 38 1 6.0717 9.1022 -1.7383 39 1 5.4208 7.8184 -4.9198 40 1 5.6920 10.3024 -6.2362 41 1 7.2772 9.4929 -6.2335 42 1 6.2582 7.4951 -7.2920 43 1 4.6732 8.3050 -7.2945 44 1 4.9739 6.9243 -10.6956 45 1 1.3340 4.5115 0.0038 46 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273558275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:59 Heat of formation + Delta-G solvation = -57.223541 kcal Electronic energy + Delta-G solvation = -26866.768103 eV Core-core repulsion = 22757.832970 eV Total energy + Delta-G solvation = -4108.935133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66495 -40.38776 -39.26723 -38.08370 -35.74890 -35.03036 -33.93884 -32.86139 -31.49763 -31.29827 -29.66495 -29.17293 -27.67302 -24.93568 -24.64017 -23.02447 -21.79451 -21.57418 -20.74794 -20.65440 -18.88765 -18.55322 -17.88820 -16.76371 -16.42564 -16.32387 -16.13338 -16.00228 -15.43091 -15.26589 -15.06054 -14.67040 -14.54790 -14.34550 -14.21307 -13.90895 -13.67615 -13.49810 -13.27629 -13.13753 -12.51150 -12.38307 -12.34095 -11.77452 -11.53044 -11.41286 -11.32171 -11.27602 -11.08781 -11.06787 -10.70195 -10.52742 -10.42527 -10.12095 -9.66822 -9.37033 -9.34795 -8.80459 -8.48792 -8.46087 -8.24474 -6.15068 -4.17809 0.97162 1.01559 1.81550 2.25431 2.87310 3.25982 3.26702 3.33055 3.33215 3.36815 3.39894 4.08592 4.37413 4.37654 4.48868 4.61446 4.63539 4.71136 4.75603 4.76370 4.98857 5.01916 5.03638 5.08604 5.20899 5.22498 5.29494 5.49503 5.68506 5.78396 5.91509 5.98293 6.06370 6.28243 6.28900 6.34455 6.39079 6.64790 6.72595 6.78538 6.99230 7.24051 7.44683 7.53170 7.69338 7.83357 8.17832 8.31339 8.67156 8.88020 9.47425 10.96542 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.001878 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.706371 B =14905.566899 C =17224.185168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.150 4.150 5 C -0.074 4.074 6 C -0.121 4.121 7 C -0.059 4.059 8 C -0.128 4.128 9 C 0.514 3.486 10 O -0.539 6.539 11 N -0.527 5.527 12 N -0.541 5.541 13 C 0.707 3.293 14 O -0.577 6.577 15 N -0.735 5.735 16 C 0.137 3.863 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.074 4.074 27 C -0.206 4.206 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.423 0.577 38 H 0.438 0.562 39 H 0.388 0.612 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.262 0.738 45 H 0.126 0.874 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 -15.279 21.797 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.168 4.168 5 C -0.092 4.092 6 C -0.121 4.121 7 C -0.096 4.096 8 C -0.169 4.169 9 C 0.301 3.699 10 O -0.414 6.414 11 N -0.278 5.278 12 N -0.299 5.299 13 C 0.406 3.594 14 O -0.451 6.451 15 N -0.390 5.390 16 C 0.014 3.986 17 C -0.025 4.025 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.092 4.092 27 C -0.225 4.225 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.264 0.736 38 H 0.283 0.717 39 H 0.222 0.778 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.144 0.856 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.970 -14.417 22.212 27.958 hybrid contribution -0.405 -0.069 -1.116 1.189 sum -9.374 -14.487 21.096 27.254 Atomic orbital electron populations 1.23064 0.78293 1.04016 1.01430 1.86072 1.21476 1.27030 1.88705 1.19079 0.92449 0.84172 0.96555 1.20448 0.91369 0.98772 1.06237 1.20915 1.00000 0.90922 0.97384 1.19764 0.93531 0.95017 1.03793 1.20254 1.01711 0.92998 0.94687 1.21650 1.02314 0.92768 1.00154 1.20975 0.79173 0.87366 0.82430 1.90739 1.54156 1.66152 1.30401 1.45034 1.59951 1.12593 1.10267 1.44703 1.63937 1.11755 1.09462 1.15889 0.79841 0.83769 0.79906 1.91003 1.48980 1.20605 1.84513 1.45598 1.64076 1.23773 1.05582 1.21716 0.99992 0.96816 0.80062 1.19341 0.97118 0.95026 0.91013 1.21028 1.39411 1.05363 0.90244 0.92131 1.24992 0.94901 0.94936 0.99449 1.69943 1.41179 1.15379 1.26795 0.86496 0.78198 0.79915 0.82858 1.20539 1.21170 1.19695 1.20883 0.93984 0.97122 0.97212 1.21241 1.00076 0.92356 1.08827 0.92513 0.88213 0.92648 0.85168 0.85119 0.90042 0.89951 0.87893 0.87971 0.73574 0.71693 0.77838 0.92324 0.92314 0.95896 0.95897 0.92806 0.85596 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.66 10.50 -19.43 -0.20 -2.86 16 3 C 0.12 1.04 6.69 -39.22 -0.26 0.78 16 4 C -0.15 -1.20 9.99 -39.43 -0.39 -1.59 16 5 C -0.07 -0.53 9.69 -39.61 -0.38 -0.92 16 6 C -0.12 -0.87 5.14 -104.60 -0.54 -1.41 16 7 C -0.06 -0.41 4.63 -27.88 -0.13 -0.54 16 8 C -0.13 -0.82 5.68 -27.88 -0.16 -0.98 16 9 C 0.51 5.11 7.95 -10.99 -0.09 5.03 16 10 O -0.54 -7.24 15.82 5.56 0.09 -7.15 16 11 N -0.53 -5.40 6.26 31.22 0.20 -5.21 16 12 N -0.54 -7.33 6.26 27.63 0.17 -7.15 16 13 C 0.71 12.00 8.68 -86.92 -0.75 11.24 16 14 O -0.58 -12.09 17.18 5.29 0.09 -12.00 16 15 N -0.73 -12.08 5.52 -65.23 -0.36 -12.44 16 16 C 0.14 2.77 5.61 -4.04 -0.02 2.75 16 17 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 18 C -0.52 -14.01 9.11 -34.44 -0.31 -14.33 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 22 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.07 -0.53 9.69 -39.60 -0.38 -0.91 16 27 C -0.21 -1.52 9.04 -39.43 -0.36 -1.88 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 34 H 0.08 0.62 8.04 -51.93 -0.42 0.21 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.42 3.42 6.70 -182.60 -1.22 2.19 16 38 H 0.44 5.97 8.10 -182.60 -1.48 4.49 16 39 H 0.39 5.23 6.39 -40.82 -0.26 4.96 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -34.59 394.05 -10.09 -44.68 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.69 Total: 4.85 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -3.03 Total: 0.03 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.74 Total: -49.39 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.03 Total: -22.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.59 -10.09 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273558275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.547 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds