Wall clock time and date at job start Tue Mar 31 2020 18:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 C 1.50700 * 109.47072 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00065 * 180.02562 * 9 8 7 12 12 N 1.40094 * 120.00547 * 180.02562 * 11 9 8 13 13 C 1.34774 * 120.00547 * 179.97438 * 12 11 9 14 14 O 1.21587 * 119.99926 * 180.02562 * 13 12 11 15 15 N 1.34776 * 119.99937 * 359.97438 * 13 12 11 16 16 C 1.46504 * 120.00132 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47030 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46959 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99538 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00527 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99490 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47156 * 90.00346 * 22 20 18 24 24 H 1.48498 * 109.47280 * 209.99842 * 22 20 18 25 25 H 1.48494 * 109.47444 * 330.00229 * 22 20 18 26 26 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 27 27 C 1.38149 * 120.05738 * 0.02562 * 26 6 5 28 28 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 29 29 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 31 31 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 34 34 H 1.08997 * 109.47106 * 329.99123 * 7 6 5 35 35 H 1.09001 * 109.47089 * 300.00245 * 8 7 6 36 36 H 1.09005 * 109.46795 * 59.99925 * 8 7 6 37 37 H 0.97006 * 119.99992 * 0.02562 * 11 9 8 38 38 H 0.97006 * 119.99461 * 359.97438 * 12 11 9 39 39 H 0.97000 * 119.99793 * 0.02562 * 15 13 12 40 40 H 1.08999 * 109.46947 * 300.00683 * 16 15 13 41 41 H 1.08997 * 109.46788 * 60.00692 * 16 15 13 42 42 H 1.09010 * 109.46891 * 300.00105 * 17 16 15 43 43 H 1.09001 * 109.47665 * 59.99780 * 17 16 15 44 44 H 0.96993 * 119.99803 * 180.02562 * 21 20 18 45 45 H 1.08005 * 119.97210 * 179.97438 * 26 6 5 46 46 H 1.07998 * 120.03203 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 6 4.2225 5.4783 -1.4311 9 6 4.9072 6.8208 -1.4237 10 8 5.1795 7.3569 -0.3704 11 7 5.2169 7.4258 -2.5875 12 7 5.8538 8.6735 -2.5807 13 6 6.1640 9.2782 -3.7446 14 8 6.7172 10.3609 -3.7386 15 7 5.8618 8.6823 -4.9151 16 6 6.1994 9.3394 -6.1802 17 6 5.7510 8.4584 -7.3480 18 6 6.0989 9.1340 -8.6494 19 1 6.5902 10.0957 -8.6441 20 6 5.7898 8.5242 -9.8467 21 7 5.1910 7.3533 -9.8532 22 14 6.2204 9.3620 -11.4598 23 1 7.5815 8.9474 -11.8851 24 1 5.2359 8.9692 -12.4999 25 1 6.1862 10.8352 -11.2771 26 6 1.9209 3.6048 0.0021 27 6 1.2913 2.3751 0.0016 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 4.0208 0.3800 -0.0014 32 1 5.1344 2.5751 0.0000 33 1 3.3560 5.7444 0.5232 34 1 4.9419 4.9365 0.5259 35 1 4.8524 4.7525 -1.9454 36 1 3.2663 5.5605 -1.9480 37 1 4.9987 6.9972 -3.4300 38 1 6.0717 9.1022 -1.7383 39 1 5.4208 7.8184 -4.9198 40 1 5.6920 10.3024 -6.2362 41 1 7.2772 9.4929 -6.2335 42 1 6.2582 7.4951 -7.2920 43 1 4.6732 8.3050 -7.2945 44 1 4.9739 6.9243 -10.6956 45 1 1.3340 4.5115 0.0038 46 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273558275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:58 Heat of formation + Delta-G solvation = -81.021110 kcal Electronic energy + Delta-G solvation = -26867.800043 eV Core-core repulsion = 22757.832970 eV Total energy + Delta-G solvation = -4109.967073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65069 -41.05666 -40.37804 -38.64313 -36.86430 -36.68584 -34.76261 -34.55838 -32.41089 -31.97060 -31.23929 -29.93941 -28.11979 -26.75483 -25.33221 -23.54551 -23.35970 -22.40388 -22.08537 -21.47357 -20.10939 -19.07180 -18.83442 -18.42746 -17.35138 -17.29269 -16.99942 -16.61276 -16.50852 -16.38377 -16.37514 -16.03964 -15.47399 -15.23571 -15.13435 -14.93470 -14.71235 -14.41334 -14.27283 -13.86188 -13.81959 -13.20446 -12.99356 -12.96631 -12.79084 -12.54045 -12.52201 -12.33014 -12.21128 -12.02469 -11.91924 -11.79916 -11.59060 -11.57034 -11.34347 -11.13437 -10.58711 -10.22681 -9.90580 -9.38156 -9.01223 -8.22115 -6.31122 0.42977 0.45093 0.82377 1.41162 1.44030 1.44789 1.55512 1.99152 2.00261 2.42874 2.44399 2.81600 3.13428 3.33944 3.88470 3.91995 4.00702 4.05956 4.19609 4.30654 4.35487 4.40350 4.44251 4.50693 4.53340 4.57736 4.70275 4.74033 4.80583 4.88247 4.97609 5.17413 5.18806 5.24350 5.31549 5.37974 5.44913 5.45027 5.61324 5.62099 5.74761 5.82007 5.88668 6.18453 6.27155 6.48685 6.63933 6.81921 7.19657 7.36563 7.38777 8.89455 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.001878 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.706371 B =14905.566899 C =17224.185168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.106 3.894 4 C -0.166 4.166 5 C -0.078 4.078 6 C -0.123 4.123 7 C -0.053 4.053 8 C -0.119 4.119 9 C 0.518 3.482 10 O -0.573 6.573 11 N -0.520 5.520 12 N -0.533 5.533 13 C 0.710 3.290 14 O -0.619 6.619 15 N -0.725 5.725 16 C 0.156 3.844 17 C 0.023 3.977 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.961 3.039 23 H -0.274 1.274 24 H -0.281 1.281 25 H -0.268 1.268 26 C -0.079 4.079 27 C -0.212 4.212 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.434 0.566 38 H 0.440 0.560 39 H 0.404 0.596 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.265 0.735 45 H 0.141 0.859 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 -15.801 21.632 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.061 3.939 4 C -0.184 4.184 5 C -0.095 4.095 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.160 4.160 9 C 0.307 3.693 10 O -0.451 6.451 11 N -0.273 5.273 12 N -0.288 5.288 13 C 0.409 3.591 14 O -0.497 6.497 15 N -0.382 5.382 16 C 0.032 3.968 17 C -0.015 4.015 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.190 4.190 21 N -0.563 5.563 22 Si 0.786 3.214 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.192 1.192 26 C -0.097 4.097 27 C -0.231 4.231 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.278 0.722 38 H 0.285 0.715 39 H 0.241 0.759 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.159 0.841 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.664 -14.989 22.068 28.374 hybrid contribution -0.250 0.017 -0.971 1.002 sum -9.915 -14.972 21.098 27.705 Atomic orbital electron populations 1.23300 0.76672 1.05389 1.02146 1.86040 1.23301 1.27280 1.88802 1.19327 0.92887 0.84661 0.97046 1.20652 0.91639 0.99360 1.06796 1.21110 1.00833 0.90653 0.96950 1.19795 0.93691 0.94907 1.03947 1.20175 1.01237 0.92768 0.94940 1.21725 1.03323 0.90648 1.00282 1.21681 0.78191 0.87964 0.81490 1.90737 1.55508 1.67187 1.31643 1.45194 1.59702 1.11139 1.11310 1.44397 1.63174 1.12936 1.08272 1.15812 0.79523 0.83293 0.80446 1.90974 1.50786 1.22561 1.85360 1.45197 1.64240 1.24306 1.04410 1.21220 0.99102 0.95881 0.80593 1.19150 0.96262 0.94786 0.91276 1.21454 1.39419 1.05609 0.91890 0.92315 1.25799 0.94810 0.95566 1.02819 1.70032 1.42017 1.16522 1.27756 0.85503 0.78089 0.79012 0.78791 1.19942 1.20661 1.19209 1.21123 0.94174 0.97659 0.96758 1.21457 1.00962 0.92114 1.08526 0.91881 0.86640 0.91781 0.84851 0.83716 0.90631 0.90610 0.85745 0.85752 0.72215 0.71494 0.75937 0.93255 0.93242 0.96840 0.96816 0.92580 0.84080 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.50 10.50 -92.44 -0.97 -6.47 16 3 C 0.11 1.73 6.69 22.51 0.15 1.88 16 4 C -0.17 -2.56 9.99 22.37 0.22 -2.34 16 5 C -0.08 -1.02 9.69 22.25 0.22 -0.80 16 6 C -0.12 -1.57 5.14 -19.85 -0.10 -1.67 16 7 C -0.05 -0.65 4.63 29.85 0.14 -0.52 16 8 C -0.12 -1.21 5.68 29.85 0.17 -1.04 16 9 C 0.52 9.29 7.95 87.66 0.70 9.98 16 10 O -0.57 -14.72 15.82 -3.04 -0.05 -14.76 16 11 N -0.52 -9.64 6.26 -173.53 -1.09 -10.72 16 12 N -0.53 -13.82 6.26 -184.75 -1.16 -14.98 16 13 C 0.71 23.57 8.68 179.06 1.55 25.13 16 14 O -0.62 -25.94 17.18 -3.99 -0.07 -26.01 16 15 N -0.72 -23.12 5.52 -478.54 -2.64 -25.76 16 16 C 0.16 6.29 5.61 86.38 0.48 6.78 16 17 C 0.02 1.07 5.09 29.85 0.15 1.22 16 18 C -0.55 -29.18 9.11 25.60 0.23 -28.95 16 19 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 22 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.08 -0.99 9.69 22.26 0.22 -0.77 16 27 C -0.21 -2.85 9.04 22.37 0.20 -2.64 16 28 H 0.06 0.42 7.66 -2.39 -0.02 0.41 16 29 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 31 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.08 1.03 8.04 -2.39 -0.02 1.01 16 34 H 0.08 1.04 8.04 -2.39 -0.02 1.02 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.43 5.94 6.70 -213.32 -1.43 4.51 16 38 H 0.44 11.66 8.10 -213.32 -1.73 9.93 16 39 H 0.40 10.22 6.39 -92.71 -0.59 9.63 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.14 1.34 6.30 -2.91 -0.02 1.32 16 Total: -1.00 -73.79 394.05 -0.47 -74.26 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -2.72 Total: 23.20 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.91 Total: 8.48 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.60 Total: -103.13 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -1.09 Total: -47.24 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.79 -0.47 -74.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273558275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.762 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds