Wall clock time and date at job start Tue Mar 31 2020 18:32:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46906 * 111.00100 * 2 1
4 4 C 1.46902 * 110.99962 * 123.95103 * 2 1 3
5 5 C 1.52998 * 109.47143 * 66.04838 * 4 2 1
6 6 N 1.46493 * 109.47663 * 179.97438 * 5 4 2
7 7 C 1.46499 * 120.00381 * 270.00153 * 6 5 4
8 8 C 1.34778 * 119.99830 * 89.99553 * 6 5 4
9 9 O 1.21361 * 120.00212 * 1.00604 * 8 6 5
10 10 C 1.49354 * 119.99991 * 180.99874 * 8 6 5
11 11 O 1.21374 * 119.99792 * 4.08782 * 10 8 6
12 12 N 1.34781 * 120.00113 * 184.07864 * 10 8 6
13 13 C 1.39725 * 119.99974 * 173.27841 * 12 10 8
14 14 C 1.39015 * 120.04080 * 330.89886 * 13 12 10
15 15 C 1.38139 * 120.06280 * 180.02562 * 14 13 12
16 16 C 1.38180 * 120.14031 * 359.72860 * 15 14 13
17 17 C 1.38926 * 120.08452 * 0.54565 * 16 15 14
18 18 O 1.35742 * 120.03130 * 179.72351 * 17 16 15
19 19 C 1.34835 * 117.00032 * 174.00314 * 18 17 16
20 20 H 1.08005 * 119.99431 * 5.09044 * 19 18 17
21 21 C 1.38653 * 120.00076 * 185.08578 * 19 18 17
22 22 N 1.31554 * 120.00172 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 119.99542 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47540 * 359.97438 * 23 21 19
25 25 H 1.48506 * 109.46872 * 120.00118 * 23 21 19
26 26 H 1.48498 * 109.47036 * 239.99750 * 23 21 19
27 27 C 1.38755 * 119.93139 * 359.45534 * 17 16 15
28 28 H 1.09003 * 109.46916 * 296.04859 * 1 2 3
29 29 H 1.08999 * 109.46825 * 56.04226 * 1 2 3
30 30 H 1.08997 * 109.47226 * 176.04801 * 1 2 3
31 31 H 1.09003 * 109.47051 * 183.95208 * 3 2 1
32 32 H 1.08997 * 109.46862 * 303.95308 * 3 2 1
33 33 H 1.09001 * 109.47083 * 63.95267 * 3 2 1
34 34 H 1.08995 * 109.47274 * 306.04694 * 4 2 1
35 35 H 1.09006 * 109.47171 * 186.04082 * 4 2 1
36 36 H 1.09008 * 109.47374 * 59.99684 * 5 4 2
37 37 H 1.09005 * 109.46959 * 300.00263 * 5 4 2
38 38 H 1.08996 * 109.47051 * 263.26623 * 7 6 5
39 39 H 1.08998 * 109.46946 * 23.26305 * 7 6 5
40 40 H 1.09005 * 109.47218 * 143.26129 * 7 6 5
41 41 H 0.96998 * 119.99903 * 353.27788 * 12 10 8
42 42 H 1.08003 * 119.97156 * 0.02562 * 14 13 12
43 43 H 1.07997 * 119.93478 * 180.02562 * 15 14 13
44 44 H 1.08007 * 119.95783 * 180.29899 * 16 15 14
45 45 H 0.96998 * 120.00014 * 179.97438 * 22 21 19
46 46 H 1.08006 * 120.06942 * 180.25405 * 27 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 6 1.9955 -0.7659 1.1376
5 6 1.6315 -2.2426 0.9704
6 7 2.1570 -3.0066 2.1046
7 6 3.5019 -3.5837 2.0389
8 6 1.4031 -3.1785 3.2085
9 8 0.2821 -2.7159 3.2558
10 6 1.9472 -3.9384 4.3734
11 8 3.0934 -4.3371 4.3560
12 7 1.1654 -4.1811 5.4442
13 6 1.6250 -5.0094 6.4714
14 6 2.5291 -6.0278 6.1923
15 6 2.9834 -6.8472 7.2074
16 6 2.5454 -6.6540 8.5036
17 6 1.6376 -5.6417 8.7883
18 8 1.2037 -5.4564 10.0611
19 6 0.4219 -4.3821 10.2911
20 1 0.1005 -3.7620 9.4673
21 6 0.0307 -4.0737 11.5851
22 7 0.4218 -4.8294 12.5883
23 14 -1.0529 -2.5858 11.9034
24 1 -1.3523 -1.9070 10.6170
25 1 -2.3213 -3.0242 12.5393
26 1 -0.3462 -1.6430 12.8072
27 6 1.1791 -4.8167 7.7712
28 1 -0.3633 0.4513 0.9233
29 1 -0.3633 0.5740 -0.8524
30 1 -0.3633 -1.0252 -0.0708
31 1 3.0829 1.3432 -0.0708
32 1 1.5899 1.9163 -0.8524
33 1 1.7044 1.8724 0.9233
34 1 1.5611 -0.3872 2.0628
35 1 3.0798 -0.6611 1.1756
36 1 2.0659 -2.6214 0.0452
37 1 0.5472 -2.3475 0.9323
38 1 3.4345 -4.6284 1.7358
39 1 4.0988 -3.0323 1.3124
40 1 3.9731 -3.5195 3.0198
41 1 0.2837 -3.7809 5.5017
42 1 2.8767 -6.1786 5.1809
43 1 3.6861 -7.6375 6.9884
44 1 2.9062 -7.2933 9.2958
45 1 0.1484 -4.6134 13.4936
46 1 0.4764 -4.0263 7.9907
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000275424624.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:32:43
Heat of formation + Delta-G solvation = -57.588612 kcal
Electronic energy + Delta-G solvation = -28349.807015 eV
Core-core repulsion = 24240.856051 eV
Total energy + Delta-G solvation = -4108.950964 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.32679 -40.92458 -39.96570 -38.57951 -38.24554 -36.89215 -35.58918 -34.24931
-31.30125 -31.09395 -30.35218 -28.54191 -27.97498 -27.39952 -26.62796 -24.67572
-23.58813 -22.83703 -22.03025 -21.09918 -19.82852 -19.46901 -18.72625 -18.14942
-17.50052 -17.09440 -16.83109 -16.78702 -16.45631 -16.28909 -15.96948 -15.83490
-15.68812 -15.49171 -15.16867 -14.83600 -14.62666 -14.28580 -14.17911 -14.06218
-13.67980 -13.58605 -13.40434 -13.31016 -13.01598 -12.78643 -12.67792 -12.65186
-12.57346 -12.46713 -12.30557 -12.11835 -11.93115 -11.46221 -11.40656 -10.79307
-10.48718 -9.96364 -9.45811 -9.41610 -8.92498 -8.48448 -6.16960 -0.09480
0.59245 0.71417 1.07798 1.34727 1.42392 1.52163 1.95225 2.15767
2.25186 2.81106 2.98298 3.11291 3.14582 3.48199 3.81889 3.98308
4.06921 4.19689 4.28569 4.31194 4.38090 4.38892 4.47000 4.52722
4.54886 4.57715 4.63090 4.72516 4.74844 4.85015 4.98317 4.98581
5.01908 5.07882 5.09899 5.16502 5.27426 5.38932 5.62000 5.64961
5.80707 5.90806 5.95801 6.00044 6.05988 6.17192 6.51621 6.74016
6.96312 7.74857 8.74460
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.013083 B = 0.002511 C = 0.002171
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2139.649786 B =11146.350755 C =12891.419045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.547 5.547
3 C 0.023 3.977
4 C 0.043 3.957
5 C 0.116 3.884
6 N -0.575 5.575
7 C 0.057 3.943
8 C 0.509 3.491
9 O -0.541 6.541
10 C 0.508 3.492
11 O -0.499 6.499
12 N -0.636 5.636
13 C 0.180 3.820
14 C -0.196 4.196
15 C -0.047 4.047
16 C -0.208 4.208
17 C 0.135 3.865
18 O -0.224 6.224
19 C -0.413 4.413
20 H 0.101 0.899
21 C -0.020 4.020
22 N -0.917 5.917
23 Si 1.016 2.984
24 H -0.253 1.253
25 H -0.267 1.267
26 H -0.269 1.269
27 C -0.260 4.260
28 H 0.016 0.984
29 H 0.083 0.917
30 H 0.072 0.928
31 H 0.078 0.922
32 H 0.082 0.918
33 H 0.019 0.981
34 H 0.016 0.984
35 H 0.089 0.911
36 H 0.118 0.882
37 H 0.078 0.922
38 H 0.070 0.930
39 H 0.099 0.901
40 H 0.095 0.905
41 H 0.424 0.576
42 H 0.144 0.856
43 H 0.161 0.839
44 H 0.122 0.878
45 H 0.273 0.727
46 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.027 7.581 -27.447 28.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 N -0.271 5.271
3 C -0.125 4.125
4 C -0.086 4.086
5 C -0.006 4.006
6 N -0.307 5.307
7 C -0.084 4.084
8 C 0.291 3.709
9 O -0.419 6.419
10 C 0.291 3.709
11 O -0.374 6.374
12 N -0.281 5.281
13 C 0.086 3.914
14 C -0.217 4.217
15 C -0.065 4.065
16 C -0.228 4.228
17 C 0.084 3.916
18 O -0.130 6.130
19 C -0.489 4.489
20 H 0.118 0.882
21 C -0.218 4.218
22 N -0.555 5.555
23 Si 0.835 3.165
24 H -0.177 1.177
25 H -0.192 1.192
26 H -0.194 1.194
27 C -0.282 4.282
28 H 0.035 0.965
29 H 0.102 0.898
30 H 0.090 0.910
31 H 0.096 0.904
32 H 0.101 0.899
33 H 0.038 0.962
34 H 0.034 0.966
35 H 0.107 0.893
36 H 0.136 0.864
37 H 0.097 0.903
38 H 0.088 0.912
39 H 0.118 0.882
40 H 0.113 0.887
41 H 0.263 0.737
42 H 0.162 0.838
43 H 0.179 0.821
44 H 0.140 0.860
45 H 0.082 0.918
46 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 4.427 7.195 -27.544 28.810
hybrid contribution -1.329 1.185 1.612 2.402
sum 3.098 8.380 -25.932 27.428
Atomic orbital electron populations
1.22510 0.86889 1.02851 1.00739 1.62003 1.08566 1.14794 1.41731
1.22460 1.01417 0.87765 1.00886 1.22417 1.01082 0.93655 0.91421
1.21708 1.00719 0.90117 0.88017 1.47771 1.17549 1.51001 1.14374
1.22621 0.80519 0.99194 1.06036 1.19830 0.85481 0.81431 0.84139
1.90768 1.19545 1.50168 1.81445 1.20345 0.85725 0.80968 0.83911
1.90662 1.16720 1.49846 1.80203 1.43179 1.20406 1.46642 1.17916
1.17451 0.96940 0.91022 0.85939 1.20973 1.02891 0.96875 1.00929
1.20975 0.97463 0.98032 0.90021 1.20565 1.02243 1.01301 0.98667
1.19591 0.92776 0.94437 0.84829 1.83974 1.60831 1.44791 1.23417
1.21809 1.27887 1.04316 0.94871 0.88210 1.26526 0.99426 1.02140
0.93695 1.70175 1.45269 1.39839 1.00198 0.84570 0.76985 0.75626
0.79299 1.17662 1.19239 1.19415 1.20806 1.09979 1.05935 0.91470
0.96542 0.89785 0.90953 0.90351 0.89894 0.96241 0.96567 0.89287
0.86378 0.90347 0.91162 0.88248 0.88664 0.73748 0.83849 0.82113
0.85976 0.91778 0.85693
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 9.32 127.69 1.19 1.44 16
2 N -0.55 -7.66 5.02 -948.82 -4.76 -12.42 16
3 C 0.02 0.26 9.57 127.69 1.22 1.48 16
4 C 0.04 0.67 5.28 86.30 0.46 1.13 16
5 C 0.12 1.74 5.31 86.38 0.46 2.20 16
6 N -0.57 -10.55 2.87 -848.47 -2.44 -12.99 16
7 C 0.06 0.81 9.58 127.77 1.22 2.04 16
8 C 0.51 12.66 7.74 87.24 0.67 13.33 16
9 O -0.54 -15.69 16.06 -3.28 -0.05 -15.74 16
10 C 0.51 14.13 7.54 87.24 0.66 14.79 16
11 O -0.50 -14.33 10.56 -3.32 -0.04 -14.37 16
12 N -0.64 -19.47 5.34 -304.89 -1.63 -21.10 16
13 C 0.18 6.59 6.35 38.20 0.24 6.83 16
14 C -0.20 -6.62 8.67 22.43 0.19 -6.43 16
15 C -0.05 -1.55 10.03 22.23 0.22 -1.33 16
16 C -0.21 -8.64 9.99 22.42 0.22 -8.41 16
17 C 0.14 6.63 6.64 22.56 0.15 6.78 16
18 O -0.22 -13.25 9.76 -22.71 -0.22 -13.47 16
19 C -0.41 -23.75 9.49 67.92 0.64 -23.10 16
20 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16
21 C -0.02 -1.12 5.49 84.83 0.47 -0.65 16
22 N -0.92 -55.71 13.67 21.61 0.30 -55.42 16
23 Si 1.02 42.75 29.55 68.60 2.03 44.77 16
24 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16
25 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16
26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16
27 C -0.26 -11.33 9.07 22.52 0.20 -11.13 16
28 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16
29 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16
30 H 0.07 0.98 6.47 -2.39 -0.02 0.96 16
31 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16
32 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16
33 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16
34 H 0.02 0.33 8.12 -2.39 -0.02 0.31 16
35 H 0.09 1.18 8.06 -2.38 -0.02 1.16 16
36 H 0.12 1.22 8.07 -2.38 -0.02 1.20 16
37 H 0.08 1.39 5.82 -2.38 -0.01 1.38 16
38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
39 H 0.10 0.84 8.02 -2.39 -0.02 0.82 16
40 H 0.10 1.78 5.30 -3.27 -0.02 1.77 16
41 H 0.42 12.01 8.28 -92.71 -0.77 11.24 16
42 H 0.14 4.35 6.14 -2.91 -0.02 4.33 16
43 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16
44 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16
45 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16
46 H 0.13 5.50 5.64 -2.91 -0.02 5.48 16
Total: -1.00 -72.04 382.56 1.66 -70.38
By element:
Atomic # 1 Polarization: 31.15 SS G_CDS: 0.25 Total: 31.40 kcal
Atomic # 6 Polarization: -9.27 SS G_CDS: 8.23 Total: -1.04 kcal
Atomic # 7 Polarization: -93.40 SS G_CDS: -8.53 Total: -101.93 kcal
Atomic # 8 Polarization: -43.27 SS G_CDS: -0.31 Total: -43.58 kcal
Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal
Total: -72.04 1.66 -70.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000275424624.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.789 kcal
(2) G-P(sol) polarization free energy of solvation -72.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds