Wall clock time and date at job start Tue Mar 31 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34759 * 117.00270 * 2 1 4 4 O 1.21507 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.47449 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.39781 * 120.05777 * 359.97438 * 5 3 2 7 7 C 1.37754 * 120.05150 * 179.74422 * 6 5 3 8 8 C 1.38940 * 120.15935 * 0.55482 * 7 6 5 9 9 N 1.39639 * 119.94391 * 179.71564 * 8 7 6 10 10 C 1.34773 * 120.00214 * 335.14561 * 9 8 7 11 11 O 1.21583 * 119.99858 * 354.37123 * 10 9 8 12 12 N 1.34773 * 120.00127 * 174.09249 * 10 9 8 13 13 C 1.46495 * 120.00055 * 180.27062 * 12 10 9 14 14 C 1.52998 * 109.47362 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47481 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00278 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99757 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47510 * 90.00358 * 19 17 15 21 21 H 1.48510 * 109.46984 * 210.00351 * 19 17 15 22 22 H 1.48502 * 109.47188 * 329.99960 * 19 17 15 23 23 C 1.39703 * 120.11207 * 359.44724 * 8 7 6 24 24 N 1.39958 * 120.02874 * 180.29406 * 23 8 7 25 25 C 1.46901 * 111.00096 * 119.99466 * 24 23 8 26 26 C 1.46895 * 111.00318 * 243.95653 * 24 23 8 27 27 C 1.38257 * 119.94971 * 0.27329 * 23 8 7 28 28 H 1.08994 * 109.47750 * 59.99500 * 1 2 3 29 29 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46848 * 299.99720 * 1 2 3 31 31 H 1.08007 * 119.97160 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.92380 * 180.27252 * 7 6 5 33 33 H 0.97000 * 119.99808 * 155.13562 * 9 8 7 34 34 H 0.97003 * 119.99977 * 0.28064 * 12 10 9 35 35 H 1.08999 * 109.47488 * 300.00398 * 13 12 10 36 36 H 1.09007 * 109.46667 * 60.00641 * 13 12 10 37 37 H 1.09001 * 109.47362 * 300.00974 * 14 13 12 38 38 H 1.09003 * 109.46952 * 60.00126 * 14 13 12 39 39 H 0.96999 * 119.99927 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46648 * 63.95757 * 25 24 23 41 41 H 1.08999 * 109.47476 * 183.95459 * 25 24 23 42 42 H 1.09000 * 109.47434 * 303.95865 * 25 24 23 43 43 H 1.08999 * 109.47763 * 56.04143 * 26 24 23 44 44 H 1.09002 * 109.47450 * 176.04788 * 26 24 23 45 45 H 1.09002 * 109.47051 * 296.04397 * 26 24 23 46 46 H 1.07996 * 120.08072 * 179.97438 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5363 1.2778 -0.0006 6 6 4.2987 0.1063 -0.0006 7 6 5.6744 0.1785 -0.0064 8 6 6.3085 1.4148 -0.0007 9 7 7.7032 1.4827 -0.0007 10 6 8.4280 0.4554 0.4849 11 8 7.8696 -0.4851 1.0158 12 7 9.7713 0.4680 0.3770 13 6 10.5587 -0.6514 0.8995 14 6 12.0454 -0.3889 0.6515 15 6 12.8554 -1.5407 1.1884 16 1 12.3592 -2.3767 1.6591 17 6 14.2297 -1.5279 1.0779 18 7 14.8338 -0.5102 0.5044 19 14 15.2335 -2.9560 1.7428 20 1 15.4059 -3.9776 0.6791 21 1 16.5657 -2.4645 2.1778 22 1 14.5271 -3.5611 2.9005 23 6 5.5531 2.5900 -0.0007 24 7 6.1937 3.8343 -0.0011 25 6 5.8247 4.6160 -1.1889 26 6 5.8998 4.5783 1.2309 27 6 4.1722 2.5228 -0.0006 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.8089 -0.8563 -0.0006 32 1 6.2615 -0.7280 -0.0109 33 1 8.1505 2.2693 -0.3503 34 1 10.2169 1.2184 -0.0466 35 1 10.3815 -0.7518 1.9702 36 1 10.2626 -1.5709 0.3943 37 1 12.2230 -0.2882 -0.4192 38 1 12.3413 0.5305 1.1569 39 1 15.8006 -0.5010 0.4269 40 1 4.7578 4.8379 -1.1607 41 1 6.3894 5.5482 -1.2003 42 1 6.0528 4.0420 -2.0870 43 1 6.1826 3.9768 2.0949 44 1 6.4651 5.5102 1.2363 45 1 4.8335 4.7999 1.2759 46 1 3.5861 3.4300 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276836159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:58 Heat of formation + Delta-G solvation = -75.911980 kcal Electronic energy + Delta-G solvation = -28159.702310 eV Core-core repulsion = 24049.956786 eV Total energy + Delta-G solvation = -4109.745525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13027 -40.39557 -39.21622 -36.83530 -36.57669 -35.23897 -34.58896 -32.92289 -30.69943 -30.27464 -29.28451 -27.89149 -27.83112 -25.08305 -24.89719 -23.79547 -22.13891 -21.18529 -20.83974 -20.54918 -18.44313 -18.13945 -17.61231 -17.14091 -16.58947 -16.36460 -15.85414 -15.75298 -15.36882 -15.19262 -14.77990 -14.57032 -14.21038 -14.10539 -13.87185 -13.73578 -13.60515 -13.33787 -12.94482 -12.78606 -12.61783 -12.41131 -12.31295 -12.30330 -12.00024 -11.57738 -11.24615 -11.09571 -11.08495 -10.84344 -10.66544 -10.64848 -10.35598 -9.96640 -9.62913 -9.31550 -9.08046 -8.93210 -8.69405 -8.44142 -8.08948 -6.12311 -4.15253 0.49585 1.07338 2.27668 2.43871 2.73561 3.23464 3.27985 3.34405 3.38553 3.49554 3.66854 4.31411 4.45790 4.52274 4.63833 4.78661 4.79800 4.87177 4.92876 5.01333 5.06574 5.16311 5.20544 5.21609 5.25000 5.31711 5.56304 5.61529 5.68253 5.80423 5.91307 6.08870 6.11340 6.20291 6.30141 6.31987 6.49662 6.62331 6.68290 6.81835 7.00878 7.09740 7.50068 7.50370 7.57206 7.85996 8.10940 8.26010 8.68552 8.90713 9.49755 10.99224 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.002125 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.723030 B =13174.029677 C =14483.297451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.515 3.485 4 O -0.517 6.517 5 C -0.159 4.159 6 C -0.035 4.035 7 C -0.148 4.148 8 C 0.250 3.750 9 N -0.673 5.673 10 C 0.695 3.305 11 O -0.576 6.576 12 N -0.727 5.727 13 C 0.138 3.862 14 C 0.012 3.988 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.024 3.976 24 N -0.504 5.504 25 C 0.024 3.976 26 C 0.027 3.973 27 C -0.055 4.055 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.416 0.584 34 H 0.397 0.603 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.452 8.901 -3.863 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.361 3.639 4 O -0.407 6.407 5 C -0.162 4.162 6 C -0.054 4.054 7 C -0.169 4.169 8 C 0.149 3.851 9 N -0.317 5.317 10 C 0.396 3.604 11 O -0.454 6.454 12 N -0.380 5.380 13 C 0.016 3.984 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.073 4.073 24 N -0.225 5.225 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.159 0.841 32 H 0.181 0.819 33 H 0.253 0.747 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.305 8.290 -3.426 25.907 hybrid contribution 0.003 0.371 0.017 0.372 sum -24.302 8.661 -3.409 26.023 Atomic orbital electron populations 1.23270 0.76083 1.03778 1.02534 1.86567 1.23461 1.32696 1.84372 1.21172 0.89154 0.81304 0.72277 1.90817 1.66961 1.36077 1.46801 1.18809 0.88703 0.94648 1.14037 1.21374 0.93228 0.97787 0.92980 1.21535 0.94336 0.98149 1.02875 1.17696 0.82266 0.92479 0.92648 1.42695 1.04126 1.21165 1.63728 1.16095 0.82478 0.82424 0.79415 1.90869 1.70252 1.35367 1.48920 1.45619 1.03839 1.25676 1.62871 1.21706 0.92571 0.86253 0.97916 1.19337 0.87258 0.98097 0.97826 1.21025 0.91377 1.04802 1.38827 0.92173 1.24999 0.97967 0.96192 0.95161 1.69954 1.09513 1.30204 1.43555 0.86500 0.79377 0.82251 0.79350 1.20552 1.21187 1.19711 1.18222 0.89881 0.90067 1.09117 1.59551 1.57398 1.01824 1.03753 1.22525 0.99315 0.98206 0.92286 1.22477 0.99566 0.98531 0.91350 1.21374 0.93787 0.97080 0.95334 0.91894 0.87929 0.91888 0.84109 0.81877 0.74695 0.76936 0.92411 0.92357 0.95866 0.95863 0.92825 0.94860 0.90594 0.90999 0.90945 0.90620 0.94893 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.35 -3.63 9.80 -40.65 -0.40 -4.03 16 3 C 0.51 6.14 7.89 34.48 0.27 6.41 16 4 O -0.52 -7.13 16.13 -19.27 -0.31 -7.44 16 5 C -0.16 -1.84 5.87 -104.99 -0.62 -2.45 16 6 C -0.03 -0.39 9.60 -39.18 -0.38 -0.77 16 7 C -0.15 -1.92 8.69 -39.50 -0.34 -2.26 16 8 C 0.25 3.16 6.45 -83.50 -0.54 2.62 16 9 N -0.67 -8.52 5.26 -14.08 -0.07 -8.59 16 10 C 0.70 11.21 8.36 -86.92 -0.73 10.49 16 11 O -0.58 -11.04 13.49 5.29 0.07 -10.97 16 12 N -0.73 -11.88 5.56 -65.23 -0.36 -12.25 16 13 C 0.14 2.78 5.61 -4.05 -0.02 2.76 16 14 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 15 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.02 0.27 4.73 -83.59 -0.40 -0.13 16 24 N -0.50 -4.70 4.30 -186.72 -0.80 -5.50 16 25 C 0.02 0.18 9.28 60.07 0.56 0.73 16 26 C 0.03 0.23 9.33 60.06 0.56 0.79 16 27 C -0.05 -0.61 8.19 -38.99 -0.32 -0.93 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.14 1.35 7.60 -52.48 -0.40 0.95 16 32 H 0.16 2.40 5.76 -52.49 -0.30 2.10 16 33 H 0.42 4.37 8.27 -40.82 -0.34 4.04 16 34 H 0.40 5.55 8.49 -40.82 -0.35 5.20 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.03 0.24 7.26 -51.93 -0.38 -0.13 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 43 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.26 7.47 -51.93 -0.39 -0.12 16 46 H 0.13 1.43 6.65 -52.49 -0.35 1.08 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -32.21 389.99 -8.41 -40.62 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.69 Total: 5.29 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.43 Total: 5.87 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.50 Total: -51.21 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.64 Total: -22.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.21 -8.41 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276836159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.295 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds