Wall clock time and date at job start Tue Mar 31 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34759 * 117.00270 * 2 1 4 4 O 1.21507 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.47449 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.39781 * 120.05777 * 359.97438 * 5 3 2 7 7 C 1.37754 * 120.05150 * 179.74422 * 6 5 3 8 8 C 1.38940 * 120.15935 * 0.55482 * 7 6 5 9 9 N 1.39639 * 119.94391 * 179.71564 * 8 7 6 10 10 C 1.34773 * 120.00214 * 335.14561 * 9 8 7 11 11 O 1.21583 * 119.99858 * 354.37123 * 10 9 8 12 12 N 1.34773 * 120.00127 * 174.09249 * 10 9 8 13 13 C 1.46495 * 120.00055 * 180.27062 * 12 10 9 14 14 C 1.52998 * 109.47362 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47481 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00278 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99757 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47510 * 90.00358 * 19 17 15 21 21 H 1.48510 * 109.46984 * 210.00351 * 19 17 15 22 22 H 1.48502 * 109.47188 * 329.99960 * 19 17 15 23 23 C 1.39703 * 120.11207 * 359.44724 * 8 7 6 24 24 N 1.39958 * 120.02874 * 180.29406 * 23 8 7 25 25 C 1.46901 * 111.00096 * 119.99466 * 24 23 8 26 26 C 1.46895 * 111.00318 * 243.95653 * 24 23 8 27 27 C 1.38257 * 119.94971 * 0.27329 * 23 8 7 28 28 H 1.08994 * 109.47750 * 59.99500 * 1 2 3 29 29 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46848 * 299.99720 * 1 2 3 31 31 H 1.08007 * 119.97160 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.92380 * 180.27252 * 7 6 5 33 33 H 0.97000 * 119.99808 * 155.13562 * 9 8 7 34 34 H 0.97003 * 119.99977 * 0.28064 * 12 10 9 35 35 H 1.08999 * 109.47488 * 300.00398 * 13 12 10 36 36 H 1.09007 * 109.46667 * 60.00641 * 13 12 10 37 37 H 1.09001 * 109.47362 * 300.00974 * 14 13 12 38 38 H 1.09003 * 109.46952 * 60.00126 * 14 13 12 39 39 H 0.96999 * 119.99927 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46648 * 63.95757 * 25 24 23 41 41 H 1.08999 * 109.47476 * 183.95459 * 25 24 23 42 42 H 1.09000 * 109.47434 * 303.95865 * 25 24 23 43 43 H 1.08999 * 109.47763 * 56.04143 * 26 24 23 44 44 H 1.09002 * 109.47450 * 176.04788 * 26 24 23 45 45 H 1.09002 * 109.47051 * 296.04397 * 26 24 23 46 46 H 1.07996 * 120.08072 * 179.97438 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5363 1.2778 -0.0006 6 6 4.2987 0.1063 -0.0006 7 6 5.6744 0.1785 -0.0064 8 6 6.3085 1.4148 -0.0007 9 7 7.7032 1.4827 -0.0007 10 6 8.4280 0.4554 0.4849 11 8 7.8696 -0.4851 1.0158 12 7 9.7713 0.4680 0.3770 13 6 10.5587 -0.6514 0.8995 14 6 12.0454 -0.3889 0.6515 15 6 12.8554 -1.5407 1.1884 16 1 12.3592 -2.3767 1.6591 17 6 14.2297 -1.5279 1.0779 18 7 14.8338 -0.5102 0.5044 19 14 15.2335 -2.9560 1.7428 20 1 15.4059 -3.9776 0.6791 21 1 16.5657 -2.4645 2.1778 22 1 14.5271 -3.5611 2.9005 23 6 5.5531 2.5900 -0.0007 24 7 6.1937 3.8343 -0.0011 25 6 5.8247 4.6160 -1.1889 26 6 5.8998 4.5783 1.2309 27 6 4.1722 2.5228 -0.0006 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.8089 -0.8563 -0.0006 32 1 6.2615 -0.7280 -0.0109 33 1 8.1505 2.2693 -0.3503 34 1 10.2169 1.2184 -0.0466 35 1 10.3815 -0.7518 1.9702 36 1 10.2626 -1.5709 0.3943 37 1 12.2230 -0.2882 -0.4192 38 1 12.3413 0.5305 1.1569 39 1 15.8006 -0.5010 0.4269 40 1 4.7578 4.8379 -1.1607 41 1 6.3894 5.5482 -1.2003 42 1 6.0528 4.0420 -2.0870 43 1 6.1826 3.9768 2.0949 44 1 6.4651 5.5102 1.2363 45 1 4.8335 4.7999 1.2759 46 1 3.5861 3.4300 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276836159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:57 Heat of formation + Delta-G solvation = -96.753973 kcal Electronic energy + Delta-G solvation = -28160.606087 eV Core-core repulsion = 24049.956786 eV Total energy + Delta-G solvation = -4110.649301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13509 -41.39694 -40.25949 -37.65368 -37.50339 -36.69510 -35.84245 -34.82959 -32.04088 -31.18874 -30.68846 -28.55805 -28.51081 -26.79586 -25.67376 -24.95003 -23.21805 -22.74570 -21.99738 -21.57568 -19.64328 -19.00399 -18.70731 -18.43117 -18.00397 -17.40875 -16.93566 -16.60762 -16.51527 -16.34071 -16.13973 -15.98283 -15.39291 -15.15814 -14.89885 -14.77932 -14.60521 -14.46244 -14.25651 -13.85567 -13.65905 -13.30644 -13.19679 -13.13901 -12.95879 -12.91976 -12.64047 -12.51582 -12.44666 -12.24707 -11.83657 -11.81532 -11.67813 -11.61028 -11.42508 -11.10112 -10.58075 -10.09479 -9.97797 -9.66207 -9.13877 -8.21773 -6.31441 -0.45847 0.16842 1.30113 1.43784 1.44327 1.52046 1.57154 1.67111 2.03101 2.42838 2.66082 2.76317 3.13484 3.18145 3.67201 3.73427 3.99201 4.10280 4.18693 4.29662 4.33397 4.34573 4.39835 4.48003 4.54962 4.57616 4.63426 4.69773 4.77447 4.89801 4.92010 4.98327 5.01429 5.04439 5.15959 5.23257 5.26243 5.37620 5.51243 5.62411 5.66156 5.80444 5.83753 5.93863 6.18673 6.21357 6.62169 6.81893 6.93940 7.37545 7.40701 8.89927 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.002125 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.723030 B =13174.029677 C =14483.297451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.517 3.483 4 O -0.539 6.539 5 C -0.161 4.161 6 C -0.028 4.028 7 C -0.159 4.159 8 C 0.232 3.768 9 N -0.657 5.657 10 C 0.699 3.301 11 O -0.607 6.607 12 N -0.722 5.722 13 C 0.160 3.840 14 C 0.022 3.978 15 C -0.544 4.544 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.037 3.963 24 N -0.511 5.511 25 C 0.023 3.977 26 C 0.027 3.973 27 C -0.054 4.054 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.427 0.573 34 H 0.409 0.591 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.265 0.735 40 H 0.035 0.965 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.417 9.152 -3.922 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.364 3.636 4 O -0.431 6.431 5 C -0.165 4.165 6 C -0.047 4.047 7 C -0.180 4.180 8 C 0.131 3.869 9 N -0.302 5.302 10 C 0.400 3.600 11 O -0.487 6.487 12 N -0.376 5.376 13 C 0.036 3.964 14 C -0.016 4.016 15 C -0.582 4.582 16 H 0.079 0.921 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.190 1.190 23 C -0.060 4.060 24 N -0.232 5.232 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.075 4.075 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.267 0.733 34 H 0.245 0.755 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.055 0.945 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.302 8.576 -3.509 26.945 hybrid contribution 0.170 0.335 0.011 0.376 sum -25.132 8.911 -3.498 26.893 Atomic orbital electron populations 1.23598 0.74185 1.05927 1.02691 1.86558 1.25340 1.31679 1.83809 1.21190 0.89169 0.81495 0.71733 1.90804 1.67406 1.36853 1.48018 1.18934 0.88881 0.94911 1.13728 1.21445 0.92518 0.98515 0.92216 1.21420 0.94929 0.97703 1.03919 1.17845 0.82015 0.93083 0.93921 1.42387 1.04153 1.20534 1.63139 1.16078 0.82152 0.82668 0.79138 1.90858 1.70759 1.36806 1.50287 1.45269 1.04004 1.25244 1.63111 1.21166 0.90775 0.87154 0.97338 1.19144 0.89317 0.96624 0.96466 1.21460 0.92204 1.05683 1.38885 0.92137 1.25854 0.99194 0.98784 0.95411 1.70056 1.09905 1.31977 1.44615 0.85466 0.77733 0.79072 0.78902 1.19833 1.20739 1.19049 1.18224 0.89702 0.90448 1.07650 1.59606 1.57301 1.01525 1.04806 1.22588 0.99792 0.98595 0.91326 1.22507 1.00157 0.98842 0.90385 1.21476 0.93810 0.97225 0.94944 0.91664 0.84851 0.91850 0.82605 0.83722 0.73348 0.75468 0.93361 0.93052 0.97161 0.97240 0.92628 0.94604 0.88875 0.91065 0.92237 0.88826 0.94472 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.82 9.80 -56.70 -0.56 -7.37 16 3 C 0.52 11.79 7.89 70.25 0.55 12.35 16 4 O -0.54 -14.38 16.13 19.81 0.32 -14.06 16 5 C -0.16 -3.58 5.87 -20.10 -0.12 -3.70 16 6 C -0.03 -0.62 9.60 22.53 0.22 -0.40 16 7 C -0.16 -4.10 8.69 22.32 0.19 -3.91 16 8 C 0.23 5.72 6.45 38.42 0.25 5.97 16 9 N -0.66 -16.25 5.26 -316.73 -1.67 -17.92 16 10 C 0.70 22.47 8.36 179.06 1.50 23.97 16 11 O -0.61 -23.52 13.49 -3.98 -0.05 -23.57 16 12 N -0.72 -23.53 5.56 -478.55 -2.66 -26.20 16 13 C 0.16 6.50 5.61 86.38 0.48 6.99 16 14 C 0.02 1.07 5.09 29.85 0.15 1.22 16 15 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 16 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -53.34 13.29 21.45 0.28 -53.06 16 19 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.04 0.77 4.73 38.20 0.18 0.95 16 24 N -0.51 -8.67 4.30 -744.65 -3.20 -11.87 16 25 C 0.02 0.30 9.28 127.69 1.19 1.49 16 26 C 0.03 0.41 9.33 127.69 1.19 1.61 16 27 C -0.05 -1.13 8.19 22.65 0.19 -0.94 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.16 2.85 7.60 -2.91 -0.02 2.83 16 32 H 0.15 4.36 5.76 -2.91 -0.02 4.34 16 33 H 0.43 8.50 8.27 -92.71 -0.77 7.73 16 34 H 0.41 11.27 8.49 -92.71 -0.79 10.48 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.04 0.45 7.26 -2.39 -0.02 0.43 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 43 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.04 0.53 7.47 -2.39 -0.02 0.51 16 46 H 0.14 2.79 6.65 -2.91 -0.02 2.77 16 Total: -1.00 -68.56 389.99 1.82 -66.74 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.53 Total: 23.73 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 7.86 Total: 18.62 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -7.25 Total: -109.04 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.29 Total: -45.00 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -68.56 1.82 -66.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276836159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.014 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds