Wall clock time and date at job start Tue Mar 31 2020 18:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46491 * 120.00119 * 2 1 4 4 C 1.53007 * 109.46989 * 269.99698 * 3 2 1 5 5 C 1.50694 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00171 * 270.02305 * 5 4 3 7 7 C 1.38217 * 120.00124 * 179.97438 * 6 5 4 8 8 C 1.38258 * 119.99907 * 359.76573 * 7 6 5 9 9 C 1.38216 * 119.99766 * 0.46893 * 8 7 6 10 10 N 1.48026 * 119.99744 * 179.78745 * 9 8 7 11 11 O 1.21799 * 119.99956 * 179.72731 * 10 9 8 12 12 O 1.21802 * 120.00016 * 359.44228 * 10 9 8 13 13 C 1.38215 * 120.00134 * 89.99890 * 5 4 3 14 14 C 1.34777 * 119.99860 * 179.97438 * 2 1 3 15 15 O 1.21583 * 120.00402 * 179.97438 * 14 2 1 16 16 N 1.34778 * 120.00140 * 0.02562 * 14 2 1 17 17 C 1.46499 * 120.00083 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.47220 * 179.97438 * 17 16 14 19 19 C 1.52992 * 109.47340 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47280 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00034 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99841 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99593 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47044 * 60.00073 * 24 22 20 26 26 H 1.48504 * 109.46731 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46860 * 299.99533 * 24 22 20 28 28 H 1.08998 * 109.46884 * 90.00604 * 1 2 3 29 29 H 1.09003 * 109.46894 * 210.00589 * 1 2 3 30 30 H 1.08997 * 109.46607 * 329.99972 * 1 2 3 31 31 H 1.09008 * 109.47301 * 150.00058 * 3 2 1 32 32 H 1.09000 * 109.47545 * 29.99704 * 3 2 1 33 33 H 1.09000 * 109.47061 * 60.00035 * 4 3 2 34 34 H 1.09000 * 109.46981 * 300.00350 * 4 3 2 35 35 H 1.08001 * 120.00180 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.99804 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.00234 * 180.24572 * 8 7 6 38 38 H 1.08005 * 119.99743 * 0.02562 * 13 5 4 39 39 H 0.97001 * 120.00145 * 0.02562 * 16 14 2 40 40 H 1.08993 * 109.47220 * 300.00022 * 17 16 14 41 41 H 1.09002 * 109.46862 * 60.00897 * 17 16 14 42 42 H 1.08999 * 109.47330 * 300.00525 * 18 17 16 43 43 H 1.09000 * 109.46826 * 60.00029 * 18 17 16 44 44 H 1.08999 * 109.47088 * 300.00368 * 19 18 17 45 45 H 1.09000 * 109.47387 * 60.00066 * 19 18 17 46 46 H 0.97001 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2056 3.0156 -1.4426 6 6 2.5138 4.2127 -1.4424 7 6 3.2044 5.4099 -1.4420 8 6 4.5870 5.4105 -1.4368 9 6 5.2785 4.2137 -1.4419 10 7 6.7588 4.2143 -1.4412 11 8 7.3682 3.1598 -1.4406 12 8 7.3674 5.2694 -1.4463 13 6 4.5877 3.0162 -1.4424 14 6 2.1389 -1.1672 0.0005 15 8 3.3547 -1.1673 0.0001 16 7 1.4650 -2.3344 0.0005 17 6 2.1975 -3.6032 0.0005 18 6 1.2032 -4.7661 0.0012 19 6 1.9681 -6.0911 0.0018 20 6 0.9888 -7.2366 0.0018 21 1 -0.0730 -7.0392 0.0018 22 6 1.4484 -8.5365 0.0029 23 7 2.7414 -8.7768 0.0034 24 14 0.2345 -9.9563 0.0036 25 1 -0.6189 -9.8785 -1.2092 26 1 0.9770 -11.2424 0.0041 27 1 -0.6195 -9.8767 1.2159 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5138 31 1 3.1500 1.1383 0.5139 32 1 1.6085 2.0284 0.5138 33 1 1.5002 1.8406 -1.9564 34 1 3.0416 0.9505 -1.9563 35 1 1.4338 4.2123 -1.4426 36 1 2.6641 6.3450 -1.4422 37 1 5.1267 6.3459 -1.4324 38 1 5.1281 2.0810 -1.4426 39 1 0.4950 -2.3345 -0.0002 40 1 2.8241 -3.6609 -0.8894 41 1 2.8240 -3.6609 0.8906 42 1 0.5768 -4.7082 0.8913 43 1 0.5763 -4.7085 -0.8886 44 1 2.5948 -6.1493 -0.8881 45 1 2.5949 -6.1484 0.8918 46 1 3.0648 -9.6913 0.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282577190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:25 Heat of formation + Delta-G solvation = -18.262777 kcal Electronic energy + Delta-G solvation = -27260.183207 eV Core-core repulsion = 23152.937539 eV Total energy + Delta-G solvation = -4107.245667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45951 -40.42316 -39.86945 -36.83822 -36.42264 -35.31442 -34.06981 -33.19500 -32.34980 -31.20784 -29.50879 -27.14342 -26.94111 -26.50228 -24.43745 -23.13209 -22.76570 -21.82486 -20.67418 -19.69122 -19.25863 -18.88609 -18.04353 -17.79151 -17.11654 -16.71070 -16.20645 -16.11234 -15.89483 -15.11755 -14.62174 -14.58787 -14.37539 -14.24850 -13.84948 -13.67535 -13.45180 -13.28366 -12.78067 -12.76935 -12.65638 -12.26678 -11.99452 -11.82897 -11.80917 -11.73926 -11.50737 -11.39425 -11.29363 -10.90046 -10.73314 -10.63623 -10.14530 -10.11152 -9.88254 -9.79201 -9.46240 -9.15244 -9.03656 -8.60853 -8.38117 -6.02635 -4.06068 -0.54581 0.39022 0.96850 1.07506 2.52975 2.76718 3.23581 3.30729 3.35811 3.37316 3.80349 3.92877 4.00266 4.19430 4.31264 4.38888 4.43121 4.54883 4.71849 4.74576 4.77154 4.98903 5.09330 5.12184 5.23795 5.31057 5.32902 5.35115 5.41749 5.61082 5.63911 5.70493 5.78187 5.83971 6.10328 6.15206 6.23418 6.48008 6.59087 6.71014 6.92582 6.99371 7.33912 7.62154 7.75030 7.95753 7.97032 8.36421 8.63504 9.00322 9.58012 11.08542 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.001694 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.589304 B =16521.548617 C =17724.932636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.639 5.639 3 C 0.141 3.859 4 C -0.101 4.101 5 C -0.073 4.073 6 C -0.066 4.066 7 C -0.116 4.116 8 C -0.062 4.062 9 C -0.041 4.041 10 N 0.026 4.974 11 O -0.153 6.153 12 O -0.163 6.163 13 C -0.048 4.048 14 C 0.700 3.300 15 O -0.587 6.587 16 N -0.740 5.740 17 C 0.133 3.867 18 C -0.120 4.120 19 C 0.024 3.976 20 C -0.524 4.524 21 H 0.054 0.946 22 C 0.057 3.943 23 N -0.893 5.893 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.394 0.606 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 32.238 -2.570 32.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.377 5.377 3 C 0.017 3.983 4 C -0.139 4.139 5 C -0.074 4.074 6 C -0.084 4.084 7 C -0.134 4.134 8 C -0.081 4.081 9 C -0.124 4.124 10 N 0.546 4.454 11 O -0.370 6.370 12 O -0.378 6.378 13 C -0.067 4.067 14 C 0.401 3.599 15 O -0.464 6.464 16 N -0.395 5.395 17 C 0.010 3.990 18 C -0.158 4.158 19 C -0.014 4.014 20 C -0.562 4.562 21 H 0.073 0.927 22 C -0.145 4.145 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.229 0.771 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.434 32.045 -2.548 32.603 hybrid contribution -0.762 -0.811 -0.051 1.114 sum -6.196 31.235 -2.599 31.949 Atomic orbital electron populations 1.21745 0.79800 1.03145 1.01778 1.47017 1.06289 1.04917 1.79499 1.21235 0.98268 0.83866 0.94961 1.21115 1.00476 0.93036 0.99299 1.19846 0.92061 0.96123 0.99404 1.21582 1.01292 0.91513 0.94023 1.21209 0.92511 0.99343 1.00383 1.21086 0.94959 0.97075 0.94986 1.21154 0.79415 0.97010 1.14779 1.43658 1.03640 1.00523 0.97572 1.94598 1.68972 1.20505 1.52921 1.94528 1.69131 1.20675 1.53509 1.21112 0.94394 0.97558 0.93660 1.15977 0.85429 0.80429 0.78017 1.90930 1.11502 1.86173 1.57846 1.45554 1.09882 1.05188 1.78888 1.21542 0.95178 0.80305 1.01983 1.21888 0.97848 0.95305 1.00756 1.19022 0.95478 0.89123 0.97729 1.21157 0.92920 0.90950 1.51190 0.92727 1.25032 0.95134 0.99017 0.95273 1.69952 1.12521 1.20352 1.50339 0.86641 0.81113 0.81572 0.78545 1.20273 1.21253 1.20266 0.92635 0.91153 0.90933 0.89459 0.90484 0.89901 0.89342 0.83920 0.83488 0.83032 0.82531 0.77112 0.91861 0.91888 0.92817 0.92802 0.96224 0.96223 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.25 59.85 0.61 1.08 16 2 N -0.64 -6.23 2.87 -187.35 -0.54 -6.77 16 3 C 0.14 1.11 5.43 -4.04 -0.02 1.09 16 4 C -0.10 -0.68 5.67 -27.88 -0.16 -0.84 16 5 C -0.07 -0.46 5.13 -104.63 -0.54 -0.99 16 6 C -0.07 -0.26 9.70 -39.58 -0.38 -0.64 16 7 C -0.12 -0.44 10.05 -39.58 -0.40 -0.84 16 8 C -0.06 -0.38 9.56 -39.58 -0.38 -0.76 16 9 C -0.04 -0.37 6.85 -79.95 -0.55 -0.92 16 10 N 0.03 0.31 4.45 33.96 0.15 0.46 16 11 O -0.15 -2.07 18.45 -29.46 -0.54 -2.62 16 12 O -0.16 -2.00 18.45 -29.46 -0.54 -2.54 16 13 C -0.05 -0.41 9.21 -39.58 -0.36 -0.77 16 14 C 0.70 10.15 8.28 -86.92 -0.72 9.43 16 15 O -0.59 -10.94 15.92 5.29 0.08 -10.86 16 16 N -0.74 -10.38 5.42 -65.23 -0.35 -10.73 16 17 C 0.13 2.32 5.67 -4.04 -0.02 2.30 16 18 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 19 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 20 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 24 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.42 6.36 -51.93 -0.33 0.09 16 30 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 31 H 0.09 0.91 7.42 -51.92 -0.39 0.52 16 32 H 0.08 0.39 7.89 -51.93 -0.41 -0.02 16 33 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 36 H 0.15 0.14 8.06 -52.49 -0.42 -0.28 16 37 H 0.15 0.75 7.61 -52.49 -0.40 0.35 16 38 H 0.16 1.49 7.61 -52.48 -0.40 1.09 16 39 H 0.39 4.39 6.20 -40.82 -0.25 4.14 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -35.26 396.65 -10.43 -45.69 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.77 Total: -1.84 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.61 Total: -7.12 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.00 Total: -42.99 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -1.00 Total: -16.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.26 -10.43 -45.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282577190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.432 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds